Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03966 Eucalyptus grandis HOM05D007152 ORTHO05D008912 1.3e-95 353.2 194 100.0
Eucgr.G02139 Eucalyptus grandis HOM05D007152 ORTHO05D008912 3.5e-45 185.7 118 85.6
Eucgr.G02132 Eucalyptus grandis HOM05D007152 ORTHO05D008912 1.9e-38 163.3 127 79.5
PGR004G0508 Punica granatum HOM05D007152 ORTHO05D008912 4.0e-33 145.6 204 50.0
Thecc.04G290300 Theobroma cacao HOM05D007152 ORTHO05D008912 5.1e-28 128.6 214 47.2
Gorai.011G193700 Gossypium raimondii HOM05D007152 ORTHO05D008912 4.7e-26 122.1 214 45.8
CANSAT78G0935 Cannabis sativa HOM05D007152 ORTHO05D008912 3.1e-25 119.4 209 47.4
GSVIVG01035097001 Vitis vinifera HOM05D007152 ORTHO05D008912 3.1e-25 119.4 210 47.1
Gohir.A10G167100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 5.2e-25 118.6 214 43.9
Gohir.D10G173100 Gossypium hirsutum HOM05D007152 ORTHO05D008912 1.2e-24 117.5 214 44.4
QL06p010801 Quercus lobata HOM05D007152 ORTHO05D008912 4.9e-23 112.1 200 45.5
PGSC0003DMG400017287 Solanum tuberosum HOM05D007152 ORTHO05D008912 1.1e-22 110.9 218 46.3
Duzib151G0510 Durio zibethinus HOM05D007152 ORTHO05D008912 2.4e-22 109.8 211 46.0
Nitab4.5_0007965g0010 Nicotiana tabacum HOM05D007152 ORTHO05D008912 2.4e-22 109.8 206 45.1
TWI73G1002 Tripterygium wilfordii HOM05D007152 ORTHO05D008912 2.1e-21 106.7 210 46.2
MBI18_g04558_MAGBIO Magnolia biondii HOM05D000387 ORTHO05D008912 4.6e-21 105.5 198 41.4
Haze_01149 Corylus avellana HOM05D007152 ORTHO05D008912 1.3e-20 104.0 204 47.5
Duzib212G0417 Durio zibethinus HOM05D007152 ORTHO05D008912 1.3e-20 104.0 218 42.7
Nn6g34202 Nelumbo nucifera HOM05D007152 ORTHO05D008912 1.3e-20 104.0 192 45.8
SalBow2G3473 Salvia bowleyana HOM05D007152 ORTHO05D008912 1.7e-20 103.6 206 41.3
Hma1.2p1_1352F.1_g277500 Hydrangea macrophylla HOM05D007152 ORTHO05D008912 3.9e-20 102.4 203 40.9
THA.LOC104818902 Tarenaya hassleriana HOM05D007152 ORTHO05D008912 3.9e-20 102.4 221 40.3
TAR362G0707 Trochodendron aralioides HOM05D007152 ORTHO05D008912 8.6e-20 101.3 198 47.5
Peaxi162Scf00065g10111 Petunia axillaris HOM05D007152 ORTHO05D008912 1.2e-18 97.4 210 44.3
COL.COLO4_13806 Corchorus olitorius HOM05D007152 ORTHO05D008912 1.6e-18 97.1 211 38.4
Dinv44343 Davidia involucrata HOM05D007152 ORTHO05D008912 1.6e-18 97.1 204 42.6
Migut.G00124 Erythranthe guttata HOM05D007152 ORTHO05D008912 1.6e-18 97.1 209 39.7
Migut.G00085 Erythranthe guttata HOM05D007152 ORTHO05D008912 6.2e-18 95.1 207 41.5
CiPaw.01G144800 Carya illinoinensis HOM05D007152 ORTHO05D008912 8.1e-18 94.7 200 45.0
VMungo1215G1115 Vigna mungo HOM05D007152 ORTHO05D008912 1.1e-17 94.4 190 45.8
Aqoxy2G02883 Aquilegia oxysepala HOM05D007152 ORTHO05D008912 2.4e-17 93.2 175 46.3
Sopen07g029030 Solanum pennellii HOM05D007152 ORTHO05D008912 3.1e-17 92.8 215 45.1
Glyma.07G244800 Glycine max HOM05D007152 ORTHO05D008912 6.9e-17 91.7 190 47.4
MELO3C021305.2 Cucumis melo HOM05D007152 ORTHO05D008912 1.5e-16 90.5 213 43.7
Glyma.17G029000 Glycine max HOM05D007152 ORTHO05D008912 2.0e-16 90.1 193 45.1
Atru.chr4.2916 Acer truncatum HOM05D007152 ORTHO05D008912 2.6e-16 89.7 202 41.6
Lj4g0009216 Lotus japonicus HOM05D007152 ORTHO05D008912 2.6e-16 89.7 185 42.7
ClCG06G004920 Citrullus lanatus HOM05D007152 ORTHO05D008912 3.4e-16 89.4 220 43.6
Cfa015435 Carpinus fangiana HOM05D007152 ORTHO05D008912 7.6e-16 88.2 198 43.9
Eucgr.B01571 Eucalyptus grandis HOM05D007152 ORTHO05D008912 7.6e-16 88.2 199 46.2
Prupe.1G130200 Prunus persica HOM05D007152 ORTHO05D008912 7.6e-16 88.2 211 43.6
RcHm_v2.0_Chr4g0423591 Rosa chinensis HOM05D007152 ORTHO05D008912 2.2e-15 86.7 211 41.7
CsaV3_6G022730 Cucumis sativus L. HOM05D007152 ORTHO05D008912 2.9e-15 86.3 194 46.4
A03p34880 Brassica napus HOM05D007152 ORTHO05D008912 4.9e-15 85.5 131 53.4
Phvul.003G108000 Phaseolus vulgaris HOM05D007152 ORTHO05D008912 4.9e-15 85.5 200 42.5
CiPaw.02G079300 Carya illinoinensis HOM05D007152 ORTHO05D008912 1.1e-14 84.3 201 37.3
Sabra10G0005500 Salix brachista HOM05D007152 ORTHO05D008912 1.9e-14 83.6 77 59.7
FAN17G1647 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.4e-14 83.2 74 56.8
Manes.03G199400 Manihot esculenta HOM05D007152 ORTHO05D008912 4.2e-14 82.4 206 37.4
BNapus_Darmor_BZH_scaffold_117p00080 Brassica napus HOM05D007152 ORTHO05D008912 5.4e-14 82.0 147 46.3
FvH4_4g18790 Fragaria vesca HOM05D007152 ORTHO05D008912 9.3e-14 81.3 219 40.6
FAN12G2857 Fragaria x ananassa HOM05D007152 ORTHO05D008912 9.3e-14 81.3 219 40.6
MD16G1162700 Malus domestica HOM05D007152 ORTHO05D008912 9.3e-14 81.3 210 42.4
Solyc07g055660.2 Solanum lycopersicum HOM05D007152 ORTHO05D008912 9.3e-14 81.3 213 34.7
Actinidia14275 Actinidia chinensis HOM05D007152 ORTHO05D008912 1.2e-13 80.9 192 42.7
Cc03_g01440 Coffea canephora HOM05D007152 ORTHO05D008912 1.6e-13 80.5 204 39.7
C05p60530 Brassica napus HOM05D007152 ORTHO05D008912 2.1e-13 80.1 216 40.7
BolC5t34707H Brassica oleracea HOM05D007152 ORTHO05D008912 2.1e-13 80.1 216 40.7
FAN12G4239 Fragaria x ananassa HOM05D007152 ORTHO05D008912 2.1e-13 80.1 219 40.2
CARHR081420 Cardamine hirsuta HOM05D007152 ORTHO05D008912 6.0e-13 78.6 213 42.7
Potri.008G211000 Populus trichocarpa HOM05D007152 ORTHO05D008912 7.8e-13 78.2 148 48.0
Aa31LG5G17390 Aethionema arabicum HOM05D007152 ORTHO05D008912 1.0e-12 77.8 163 47.9
FAN07G1963 Fragaria x ananassa HOM05D007152 ORTHO05D008912 1.3e-12 77.4 205 41.0
Lsat_1_v5_gn_3_21801 Lactuca sativa HOM05D007152 ORTHO05D008912 1.7e-12 77.0 195 40.0
Nn2g11629 Nelumbo nucifera HOM05D000191 ORTHO05D000122 1.7e-12 77.0 189 37.6
Potri.010G006600 Populus trichocarpa HOM05D007152 ORTHO05D008912 1.7e-12 77.0 116 54.3
BraA01t04415Z Brassica rapa HOM05D007152 ORTHO05D008912 3.0e-12 76.3 147 46.9
Sc13g0003130 Simmondsia chinensis HOM05D007152 ORTHO05D008912 3.9e-12 75.9 98 57.1
Lalb_Chr20g0121161 Lupinus albus HOM05D007152 ORTHO05D008912 5.1e-12 75.5 158 46.8
Sed0011406 Sechium edule HOM05D007152 ORTHO05D008912 5.1e-12 75.5 77 51.9
Manes.15G009801 Manihot esculenta HOM05D007152 ORTHO05D008912 8.7e-12 74.7 104 44.2
A05p41300 Brassica napus HOM05D007152 ORTHO05D008912 1.5e-11 73.9 203 42.4
BraA05t22853Z Brassica rapa HOM05D007152 ORTHO05D008912 1.5e-11 73.9 209 41.6
DCAR_027047 Daucus carota HOM05D007152 ORTHO05D008912 1.5e-11 73.9 184 42.4
Medtr4g120400 Medicago truncatula HOM05D007152 ORTHO05D008912 1.5e-11 73.9 77 50.6
Nitab4.5_0000306g0360 Nicotiana tabacum HOM05D007152 ORTHO05D008912 1.5e-11 73.9 200 39.5
CSS0046950 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 3.3e-11 72.8 201 42.8
Carub.0003s0633 Capsella rubella HOM05D007152 ORTHO05D008912 1.6e-10 70.5 210 40.0
PSO407G0318 Papaver somniferum HOM05D007152 ORTHO05D008912 2.1e-10 70.1 178 41.0
Sp3g05760 Schrenkiella parvula HOM05D007152 ORTHO05D008912 2.1e-10 70.1 214 41.1
CSS0044056 Camellia sinensis var. sinensis HOM05D007152 ORTHO05D008912 2.8e-10 69.7 201 41.8
Sabra08G0151100 Salix brachista HOM05D007152 ORTHO05D008912 2.8e-10 69.7 65 61.5
AUR62018060 Chenopodium quinoa HOM05D007152 ORTHO05D008912 4.8e-10 68.9 62 56.5
AL3G17910 Arabidopsis lyrata HOM05D007152 ORTHO05D008912 6.2e-10 68.6 71 49.3
BolC3t16516H Brassica oleracea HOM05D007152 ORTHO05D008912 6.2e-10 68.6 190 35.8
AT3G06780 Arabidopsis thaliana HOM05D007152 ORTHO05D008912 8.1e-10 68.2 71 49.3
Thhalv10022432m.g Eutrema salsugineum HOM05D007152 ORTHO05D008912 8.1e-10 68.2 163 44.8
Ca_21475_v3 Cicer arietinum L. HOM05D007152 ORTHO05D008912 2.4e-09 66.6 77 46.8
EL10Ac3g06653 Beta vulgaris HOM05D007152 ORTHO05D008912 4.0e-09 65.9 113 51.3
C03p42450 Brassica napus HOM05D007152 ORTHO05D008912 5.3e-09 65.5 190 35.8
Lalb_Chr12g0201151 Lupinus albus HOM05D007152 ORTHO05D008912 5.3e-09 65.5 189 41.3
Ciclev10006039m.g Citrus clementina HOM05D007152 ORTHO05D008912 1.2e-08 64.3 199 33.7
TPR.G22774 Trifolium pratense HOM05D007152 ORTHO05D008912 1.2e-08 64.3 130 47.7
RcHm_v2.0_Chr7g0221621 Rosa chinensis HOM05D007152 ORTHO05D008912 4.5e-08 62.4 54 57.4
Lsat_1_v5_gn_6_76040 Lactuca sativa HOM05D007152 ORTHO05D008912 1.7e-07 60.5 63 44.4
SGA_v2.0_scaffold18G08363 Striga asiatica HOM05D007152 ORTHO05D008912 2.2e-07 60.1 189 39.2
ECA246G2204 Erigeron canadensis HOM05D007152 ORTHO05D008912 1.4e-06 57.4 153 38.6
Nn4g25735 Nelumbo nucifera HOM05D007152 ORTHO05D008912 3.2e-06 56.2 160 36.2
HanXRQChr07g0199211 Helianthus annuus HOM05D007152 ORTHO05D008912 4.2e-06 55.8 138 43.5
CDE02G4694 Ceratophyllum demersum HOM05D007152 ORTHO05D008912 5.4e-06 55.5 120 49.2


User provided reference genes

Program Settings