Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 0.0e+00 1336.6 689 100.0
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 3.0e-200 702.6 698 58.5
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 3.5e-188 662.5 698 56.2
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 1.0e-187 661.0 718 53.9
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 1.0e-187 661.0 699 54.5
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.3e-187 660.6 702 53.7
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 5.2e-184 648.7 697 52.8
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 2.0e-183 646.7 693 54.8
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 6.3e-182 641.7 702 55.4
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 2.4e-181 639.8 687 53.7
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.6e-180 637.1 700 53.3
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.9e-179 632.9 691 56.0
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 6.5e-179 631.7 696 53.4
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.5e-178 630.6 707 55.2
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 3.2e-178 629.4 700 54.4
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 9.4e-178 627.9 691 55.9
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.6e-177 627.1 702 53.4
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.6e-177 625.9 683 53.1
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.4e-176 624.0 703 53.5
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.8e-176 623.6 690 52.6
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.7e-174 617.1 693 53.8
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.7e-174 617.1 699 52.9
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 5.4e-173 612.1 681 52.1
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.2e-172 610.9 706 52.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.2e-172 610.9 694 53.0
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.0e-171 607.8 706 53.0
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.3e-171 607.4 696 52.6
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 1.5e-170 604.0 869 45.3
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 2.5e-170 603.2 685 53.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.6e-169 600.5 706 52.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 1.2e-167 594.3 651 54.5
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.0e-167 593.6 696 53.2
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.6e-167 593.2 702 51.4
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.4e-167 592.4 686 51.0
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 2.4e-165 586.6 694 50.9
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 4.1e-165 585.9 690 50.7
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 9.2e-165 584.7 706 50.1
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 7.7e-164 581.6 682 53.1
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 1.3e-163 580.9 719 51.0
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 4.7e-161 572.4 693 52.5
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 8.0e-161 571.6 711 50.1
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 6.8e-160 568.5 706 50.4
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 1.2e-159 567.8 718 50.0
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 1.5e-159 567.4 694 51.6
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.5e-159 567.4 705 49.9
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 4.9e-158 562.4 705 50.1
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 7.8e-156 555.1 728 48.1
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 5.0e-155 552.4 719 48.1
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 8.6e-155 551.6 676 50.3
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 1.6e-153 547.4 687 49.1
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 3.6e-153 546.2 754 47.3
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 2.3e-152 543.5 723 46.9
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 5.2e-152 542.3 707 48.2
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 2.0e-151 540.4 612 53.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 9.8e-151 538.1 685 47.7
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 8.3e-150 535.0 688 48.4
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 1.1e-149 534.6 633 51.7
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.4e-149 534.3 686 47.7
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 2.4e-149 533.5 699 47.4
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 2.4e-149 533.5 705 47.5
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 5.4e-149 532.3 712 47.3
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.6e-148 530.8 685 49.8
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 2.0e-148 530.4 685 49.2
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 2.0e-148 530.4 737 46.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 7.8e-148 528.5 710 48.3
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.1e-146 524.6 596 53.0
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 1.5e-146 524.2 745 47.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-145 520.8 700 46.1
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 4.7e-145 519.2 712 46.9
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.4e-144 517.7 684 48.1
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 4.0e-144 516.2 637 50.5
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 8.9e-144 515.0 700 47.0
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 8.9e-144 515.0 709 48.0
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 1.5e-143 514.2 698 47.4
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 3.7e-142 509.6 678 47.8
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.7e-142 509.6 708 48.6
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 4.9e-142 509.2 645 47.8
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.4e-141 507.7 697 46.2
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 4.1e-141 506.1 648 48.5
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.2e-140 504.6 681 47.1
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 1.2e-140 504.6 693 47.2
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 3.5e-140 503.1 673 47.8
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 1.7e-139 500.7 679 48.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 2.3e-139 500.4 680 46.9
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.1e-138 498.0 683 47.3
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 3.3e-138 496.5 679 47.6
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 2.8e-137 493.4 683 46.7
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 6.2e-137 492.3 683 46.7
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 8.1e-137 491.9 743 43.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.3e-136 490.3 696 45.3
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 5.2e-136 489.2 683 46.7
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 3.4e-135 486.5 686 46.6
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 5.8e-135 485.7 694 46.4
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 7.6e-135 485.3 590 49.7
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 9.9e-135 485.0 688 48.3
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 1.3e-134 484.6 684 46.5
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 8.4e-134 481.9 688 47.8
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 1.1e-133 481.5 686 45.2
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.4e-133 481.1 684 49.0
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 4.1e-133 479.6 709 45.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 5.4e-133 479.2 609 48.8
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 1.6e-132 477.6 685 49.1
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 6.0e-132 475.7 709 44.6
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 7.3e-130 468.8 688 46.8
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.2e-127 461.5 689 43.1
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 2.4e-125 453.8 677 43.3
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 4.3e-122 443.0 689 43.8
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 3.4e-119 433.3 698 42.8
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 2.7e-116 423.7 703 42.5
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 3.5e-116 423.3 781 39.9
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.0e-115 421.8 640 43.3
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 3.7e-113 413.3 610 44.3
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 1.9e-106 391.0 674 41.2
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 1.8e-99 367.9 647 40.5
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.6e-97 361.3 689 38.6
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 3.6e-92 343.6 615 39.5
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 6.5e-86 322.8 435 48.3
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 1.0e-83 315.5 636 38.1
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.3e-82 310.5 542 41.1
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 3.3e-82 310.5 606 38.9
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 3.5e-71 273.9 695 33.4
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 4.5e-63 246.9 659 31.0
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 1.2e-60 238.8 681 31.7
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 3.5e-55 220.7 684 31.3
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 5.0e-46 190.3 233 46.8
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 3.3e-45 187.6 227 49.8
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.4e-43 182.2 289 41.9
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.8e-43 181.8 134 68.7
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 5.8e-42 176.8 172 58.1
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.4e-40 171.4 181 55.2
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.1e-32 146.0 767 26.7
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 9.2e-32 142.9 488 29.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 8.9e-27 126.3 94 70.2
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 4.4e-26 124.0 105 57.1
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 3.4e-18 97.8 135 45.2
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 1.7e-17 95.5 637 24.6
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 9.9e-10 69.7 132 37.9
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 9.9e-10 69.7 132 37.9
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 9.9e-10 69.7 132 37.9
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.4e-08 65.9 87 47.1
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 1.9e-08 65.5 59 54.2
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 2.4e-08 65.1 167 25.7
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 7.1e-08 63.5 128 35.9
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.7e-06 58.9 109 39.4


User provided reference genes

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