Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 2103.9 1059 100.0
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1307.0 1086 60.8
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1302.3 1064 61.3
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1290.0 1069 62.1
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1274.6 1090 59.5
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1263.8 1050 59.8
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1248.8 1061 59.6
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1242.6 1071 58.9
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1234.2 1059 59.3
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1233.4 1066 59.0
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1224.9 1024 58.7
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1220.7 1024 58.4
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1215.7 1045 59.5
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1214.9 1065 58.2
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1205.7 1050 58.3
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1203.3 1039 58.8
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1196.0 1089 57.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1193.7 1067 57.7
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1193.7 1067 57.7
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1191.0 1018 59.3
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1188.7 1028 58.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1188.3 1079 56.4
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1184.9 1069 57.2
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1179.9 1088 55.9
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1177.9 1019 58.9
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1176.4 1095 56.3
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1169.1 1099 55.7
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1167.9 1065 56.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1166.4 1039 57.4
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1157.9 1076 54.9
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1156.0 1056 56.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1152.5 1072 54.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1119.0 1136 51.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1117.4 1041 54.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1115.5 991 57.6
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1111.3 1097 53.5
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1109.7 1020 55.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1095.1 1021 56.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1092.8 1042 53.0
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1091.6 1150 49.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1091.3 1020 55.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1087.8 1004 53.7
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1084.3 1037 52.1
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1083.2 1062 53.1
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1083.2 1057 53.7
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1078.5 911 59.8
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1075.5 1050 53.1
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 6.1e-309 1064.3 1057 52.7
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 4.8e-306 1054.7 1099 51.0
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 6.3e-306 1054.3 1016 51.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 6.9e-305 1050.8 1025 53.2
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 1.3e-303 1046.6 1018 52.5
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.7e-303 1046.2 1039 51.9
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.0e-303 1044.6 1047 52.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 1.2e-301 1040.0 971 53.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 2.1e-301 1039.3 1016 52.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 6.7e-300 1034.2 1081 50.4
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 1.5e-299 1033.1 1037 50.5
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 4.4e-299 1031.6 1040 50.5
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 5.7e-299 1031.2 1074 49.4
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 9.7e-299 1030.4 1052 50.6
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 1.1e-297 1026.9 1052 49.9
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 3.4e-296 1021.9 1002 50.8
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.8e-292 1009.6 1022 51.1
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.4e-289 999.2 1077 48.3
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-288 996.9 1065 50.7
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 5.9e-288 994.6 953 52.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 1.3e-287 993.4 1061 48.7
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.4e-284 983.4 1022 50.6
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 5.2e-284 981.5 1101 48.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 1.1e-281 973.8 1011 50.1
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 2.4e-281 972.6 844 58.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 9.8e-275 950.7 883 53.9
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.8e-274 948.3 1050 47.1
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 9.1e-273 944.1 1117 45.9
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.0e-271 938.3 768 60.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 7.2e-270 934.5 888 52.7
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 8.0e-269 931.0 830 58.1
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-264 917.1 1075 46.5
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 5.6e-262 908.3 854 54.0
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 1.1e-252 877.5 881 51.3
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 8.9e-252 874.4 1064 44.5
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.3e-242 844.0 1042 44.2
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 5.6e-238 828.6 760 56.1
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 2.4e-233 813.1 1059 44.2
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.8e-229 799.7 693 56.9
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 3.4e-227 792.7 997 43.0
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 9.3e-225 784.6 881 47.8
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 4.2e-217 759.2 719 54.7
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 8.7e-207 724.9 637 56.7
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.6e-205 720.7 1062 39.6
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 9.3e-201 704.9 730 49.6
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.3e-198 696.4 552 61.6
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 3.1e-196 689.9 637 55.1
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 1.3e-194 684.5 1075 38.1
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.7e-162 577.8 485 59.4
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.2e-155 555.1 637 46.0
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 6.1e-152 542.7 583 47.9
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 6.0e-115 419.9 372 58.9
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 4.4e-110 403.7 358 58.1
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 7.1e-100 369.8 392 51.0
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 4.3e-97 360.5 338 52.4
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.0e-87 327.4 1039 27.6
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 5.3e-79 300.4 218 63.3
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.2e-70 272.7 219 62.1
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 1.8e-66 258.8 226 56.2
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 1.1e-63 249.6 291 44.0
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.6e-59 235.7 194 60.8
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 2.6e-57 228.4 265 47.9
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.8e-56 224.2 873 25.5
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 6.3e-56 223.8 206 54.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 8.8e-50 203.4 179 58.1
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 7.5e-49 200.3 175 59.4
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 7.0e-47 193.7 179 55.3
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-46 192.6 350 37.7
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.5e-46 191.0 179 55.3
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 9.1e-39 166.8 131 63.4
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 5.9e-38 164.1 565 26.4
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 9.5e-36 156.8 201 41.3
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 3.0e-34 151.8 161 48.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 5.2e-34 151.0 115 60.0
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.4e-31 142.9 132 54.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 2.4e-31 142.1 124 57.3
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.5e-30 138.3 452 23.9
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.3e-29 136.3 996 22.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 1.7e-29 136.0 134 49.3
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.3e-28 131.3 110 58.2
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 9.5e-28 130.2 126 53.2
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.4e-23 115.5 112 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.5e-20 105.5 995 22.1
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.1e-18 100.1 365 27.7
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 2.0e-17 95.9 83 60.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.2e-16 92.4 247 27.5
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.9e-16 92.0 348 26.4
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 4.9e-16 91.3 366 24.3
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 2.1e-14 85.9 97 42.3
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 2.1e-14 85.9 65 63.1
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 7.8e-14 84.0 84 44.0
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 7.8e-14 84.0 84 44.0
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 5.1e-13 81.3 59 64.4
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.5e-12 79.7 59 62.7
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.8e-11 75.5 66 59.1
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-07 63.5 100 40.0
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 1.6e-06 59.7 45 55.6
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.0e-06 57.8 50 54.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 6.0e-06 57.8 45 53.3


User provided reference genes

Program Settings