Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03925 Eucalyptus grandis HOM05D006879 ORTHO05D008452 7.6e-61 236.9 112 100.0
Eucgr.F03793 Eucalyptus grandis HOM05D006879 ORTHO05D008452 8.8e-25 117.1 63 87.3
CiPaw.06G031600 Carya illinoinensis HOM05D006879 ORTHO05D008452 1.2e-16 90.1 64 67.2
CSS0011792 Camellia sinensis var. sinensis HOM05D006879 ORTHO05D008452 2.0e-16 89.4 61 70.5
Hma1.2p1_0054F.1_g031040 Hydrangea macrophylla HOM05D006879 ORTHO05D008452 2.6e-16 89.0 59 67.8
PGR083G2398 Punica granatum HOM05D006879 ORTHO05D008452 2.6e-16 89.0 62 67.7
QL09p034330 Quercus lobata HOM05D006879 ORTHO05D008452 1.7e-15 86.3 64 64.1
QL09p034374 Quercus lobata HOM05D006879 ORTHO05D008452 1.7e-15 86.3 64 64.1
Nn5g28321 Nelumbo nucifera HOM05D006879 ORTHO05D008452 2.8e-15 85.5 50 74.0
Dinv07211 Davidia involucrata HOM05D006879 ORTHO05D008452 3.7e-15 85.1 61 67.2
HanXRQChr03g0088981 Helianthus annuus HOM05D006879 ORTHO05D008452 8.2e-15 84.0 58 65.5
ClCG11G015720 Citrullus lanatus HOM05D006879 ORTHO05D008452 1.1e-14 83.6 64 60.9
Dinv27305 Davidia involucrata HOM05D006879 ORTHO05D008452 1.1e-14 83.6 57 68.4
PSO170G0506 Papaver somniferum HOM05D006879 ORTHO05D008452 1.1e-14 83.6 60 63.3
CsaV3_4G028290 Cucumis sativus L. HOM05D006879 ORTHO05D008452 1.4e-14 83.2 61 57.4
Sed0023358 Sechium edule HOM05D006879 ORTHO05D008452 1.4e-14 83.2 61 59.0
Sc02g0005010 Simmondsia chinensis HOM05D006879 ORTHO05D008452 1.4e-14 83.2 56 66.1
Cfa016025 Carpinus fangiana HOM05D006879 ORTHO05D008452 2.4e-14 82.4 56 64.3
MELO3C010476.2 Cucumis melo HOM05D006879 ORTHO05D008452 3.1e-14 82.0 61 57.4
Gohir.D01G180300 Gossypium hirsutum HOM05D006879 ORTHO05D008452 3.1e-14 82.0 63 63.5
HanXRQChr04g0101301 Helianthus annuus HOM05D006879 ORTHO05D008452 3.1e-14 82.0 58 63.8
PSO528G0112 Papaver somniferum HOM05D006879 ORTHO05D008452 3.1e-14 82.0 60 61.7
VMungo0647G0471 Vigna mungo HOM05D006879 ORTHO05D008452 4.1e-14 81.6 61 60.7
Gohir.A01G189200 Gossypium hirsutum HOM05D006879 ORTHO05D008452 5.3e-14 81.3 63 61.9
Phvul.008G160300 Phaseolus vulgaris HOM05D006879 ORTHO05D008452 5.3e-14 81.3 56 64.3
Actinidia03466 Actinidia chinensis HOM05D006879 ORTHO05D008452 9.1e-14 80.5 63 61.9
TPR.G20905 Trifolium pratense HOM05D006879 ORTHO05D008452 9.1e-14 80.5 55 67.3
Gorai.002G222300 Gossypium raimondii HOM05D006879 ORTHO05D008452 1.2e-13 80.1 63 60.3
HanXRQChr01g0005251 Helianthus annuus HOM05D006879 ORTHO05D008452 1.6e-13 79.7 58 60.3
Medtr3g088570 Medicago truncatula HOM05D006879 ORTHO05D008452 1.6e-13 79.7 48 70.8
vmacro00838 Vaccinium macrocarpon HOM05D006879 ORTHO05D008452 1.6e-13 79.7 61 62.3
COL.COLO4_03398 Corchorus olitorius HOM05D006879 ORTHO05D008452 2.7e-13 79.0 61 62.3
FAN20G0093 Fragaria x ananassa HOM05D006879 ORTHO05D008452 2.7e-13 79.0 61 60.7
CAN.G21.5 Capsicum annuum HOM05D006879 ORTHO05D008452 3.5e-13 78.6 59 62.7
Haze_00431 Corylus avellana HOM05D000586 ORTHO05D008452 3.5e-13 78.6 50 68.0
Cc10_g12010 Coffea canephora HOM05D006879 ORTHO05D008452 4.5e-13 78.2 63 60.3
Hund17297 Selenicereus undatus HOM05D006879 ORTHO05D008452 4.5e-13 78.2 54 66.7
Solyc08g067800.3 Solanum lycopersicum HOM05D006879 ORTHO05D008452 4.5e-13 78.2 50 68.0
Sopen08g021740 Solanum pennellii HOM05D006879 ORTHO05D008452 4.5e-13 78.2 50 68.0
Eucgr.H03927 Eucalyptus grandis HOM05D006879 ORTHO05D008452 5.9e-13 77.8 40 92.5
MD15G1347100 Malus domestica HOM05D006879 ORTHO05D008452 5.9e-13 77.8 64 59.4
Thecc.08G126700 Theobroma cacao HOM05D006879 ORTHO05D008452 5.9e-13 77.8 54 64.8
TAR628G0734 Trochodendron aralioides HOM05D006879 ORTHO05D008452 5.9e-13 77.8 56 66.1
Prupe.1G494800 Prunus persica HOM05D006879 ORTHO05D008452 7.7e-13 77.4 58 56.9
Cpa.g.sc418.6 Carica papaya HOM05D006879 ORTHO05D008452 1.0e-12 77.0 63 60.3
FvH4_2g27080 Fragaria vesca HOM05D006879 ORTHO05D008452 1.0e-12 77.0 61 59.0
RhsimUnG0092300 Rhododendron simsii HOM05D000586 ORTHO05D008452 1.0e-12 77.0 61 60.7
TWI32G0821 Tripterygium wilfordii HOM05D006879 ORTHO05D008452 1.3e-12 76.6 63 58.7
Lsat_1_v5_gn_6_93360 Lactuca sativa HOM05D006879 ORTHO05D008452 2.2e-12 75.9 56 64.3
Manes.02G164300 Manihot esculenta HOM05D006879 ORTHO05D008452 2.2e-12 75.9 61 54.1
arahy.Tifrunner.gnm1.ann1.0SZ2NS Arachis hypogaea HOM05D006879 ORTHO05D008452 2.9e-12 75.5 56 60.7
arahy.Tifrunner.gnm1.ann1.61DA9N Arachis hypogaea HOM05D006879 ORTHO05D008452 2.9e-12 75.5 56 60.7
arahy.Tifrunner.gnm1.ann1.GV74HV Arachis hypogaea HOM05D006879 ORTHO05D008452 2.9e-12 75.5 56 60.7
Lj1g0005641 Lotus japonicus HOM05D006879 ORTHO05D008452 2.9e-12 75.5 61 55.7
Peaxi162Scf00332g00015 Petunia axillaris HOM05D006879 ORTHO05D008452 2.9e-12 75.5 56 62.5
Potri.005G178501 Populus trichocarpa HOM05D006879 ORTHO05D008452 2.9e-12 75.5 62 56.5
RcHm_v2.0_Chr6g0295961 Rosa chinensis HOM05D006879 ORTHO05D008452 2.9e-12 75.5 51 62.7
Aqoxy6G00233 Aquilegia oxysepala HOM05D006879 ORTHO05D008452 3.8e-12 75.1 63 60.3
Duzib041G0788 Durio zibethinus HOM05D006879 ORTHO05D008452 3.8e-12 75.1 59 55.9
FAN24G0949 Fragaria x ananassa HOM05D006879 ORTHO05D008452 3.8e-12 75.1 61 57.4
Ca_28182_v3 Cicer arietinum L. HOM05D006879 ORTHO05D008452 5.0e-12 74.7 46 69.6
FAN15G3590 Fragaria x ananassa HOM05D006879 ORTHO05D008452 5.0e-12 74.7 58 58.6
Ciclev10002899m.g Citrus clementina HOM05D006879 ORTHO05D008452 8.5e-12 73.9 50 62.0
Lalb_Chr11g0066061 Lupinus albus HOM05D006879 ORTHO05D008452 8.5e-12 73.9 67 53.7
ECA240G3722 Erigeron canadensis HOM05D006879 ORTHO05D008452 1.1e-11 73.6 58 60.3
CARHR071070 Cardamine hirsuta HOM05D006879 ORTHO05D008452 1.5e-11 73.2 58 55.2
AUR62014329 Chenopodium quinoa HOM05D006879 ORTHO05D008452 1.5e-11 73.2 59 62.7
Glyma.14G151700 Glycine max HOM05D006879 ORTHO05D008452 1.5e-11 73.2 57 57.9
ATR0584G146 Amborella trichopoda HOM05D006879 ORTHO05D008452 1.9e-11 72.8 50 62.0
AL2G37750 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 1.9e-11 72.8 63 50.8
Nitab4.5_0004334g0040 Nicotiana tabacum HOM05D006879 ORTHO05D008452 2.5e-11 72.4 57 61.4
Psat5g086200 Pisum sativum HOM05D006879 ORTHO05D008452 2.5e-11 72.4 56 60.7
Ah.05g171050 Amaranthus hybridus HOM05D006879 ORTHO05D008452 4.2e-11 71.6 57 66.7
Nitab4.5_0005583g0080 Nicotiana tabacum HOM05D006879 ORTHO05D008452 5.5e-11 71.2 57 59.6
MSTRG.25382 Avicennia marina HOM05D006879 ORTHO05D008452 7.2e-11 70.9 51 62.7
BcaB02g07111 Brassica carinata HOM05D006879 ORTHO05D008452 7.2e-11 70.9 61 54.1
BraA07t30441Z Brassica rapa HOM05D006879 ORTHO05D008452 1.2e-10 70.1 64 53.1
BcaC08g45472 Brassica carinata HOM05D006879 ORTHO05D008452 1.6e-10 69.7 64 53.1
A07p27940 Brassica napus HOM05D006879 ORTHO05D008452 1.6e-10 69.7 64 53.1
C06p31190 Brassica napus HOM05D006879 ORTHO05D008452 1.6e-10 69.7 64 53.1
BolC6t38260H Brassica oleracea HOM05D006879 ORTHO05D008452 1.6e-10 69.7 64 53.1
Carub.0001s2123 Capsella rubella HOM05D006879 ORTHO05D008452 1.6e-10 69.7 54 55.6
Sp5g32720 Schrenkiella parvula HOM05D006879 ORTHO05D008452 1.6e-10 69.7 64 51.6
THA.LOC104813659 Tarenaya hassleriana HOM05D006879 ORTHO05D008452 1.6e-10 69.7 56 57.1
AT1G21770 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 2.1e-10 69.3 54 53.7
CDE07G0981 Ceratophyllum demersum HOM05D006879 ORTHO05D008452 2.1e-10 69.3 50 60.0
Carub.0002s2444 Capsella rubella HOM05D006879 ORTHO05D008452 3.6e-10 68.6 50 58.0
AUR62019072 Chenopodium quinoa HOM05D006879 ORTHO05D008452 3.6e-10 68.6 54 57.4
Aa31LG4G7630 Aethionema arabicum HOM05D006879 ORTHO05D008452 4.7e-10 68.2 50 54.0
AT1G77540 Arabidopsis thaliana HOM05D006879 ORTHO05D008452 4.7e-10 68.2 58 51.7
EL10Ac1g01022 Beta vulgaris HOM05D006879 ORTHO05D008452 6.1e-10 67.8 52 59.6
AL1G34970 Arabidopsis lyrata HOM05D006879 ORTHO05D008452 8.0e-10 67.4 50 56.0
Thhalv10019334m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 8.0e-10 67.4 50 56.0
Migut.C01128 Erythranthe guttata HOM05D006879 ORTHO05D008452 1.4e-09 66.6 52 61.5
Atru.chr13.1490 Acer truncatum HOM05D006879 ORTHO05D008452 3.0e-09 65.5 52 57.7
CANSAT56G2034 Cannabis sativa HOM05D006879 ORTHO05D008452 5.2e-09 64.7 63 52.4
Aa31LG7G5750 Aethionema arabicum HOM05D006879 ORTHO05D008452 6.8e-09 64.3 52 51.9
SGA_v2.0_scaffold52G18964 Striga asiatica HOM05D006879 ORTHO05D008452 8.8e-09 63.9 56 58.9
Thhalv10009164m.g Eutrema salsugineum HOM05D006879 ORTHO05D008452 4.4e-08 61.6 50 52.0
BolC5t30777H Brassica oleracea HOM05D006879 ORTHO05D008452 5.7e-08 61.2 48 52.1
BcaC05g26099 Brassica carinata HOM05D006879 ORTHO05D008452 7.5e-08 60.8 48 52.1
C05p20780 Brassica napus HOM05D006879 ORTHO05D008452 7.5e-08 60.8 48 52.1
SEGI_19819 Sequoiadendron giganteum HOM05D006879 ORTHO05D008452 9.8e-08 60.5 58 53.4
CAN.G21.4 Capsicum annuum HOM05D006879 ORTHO05D008452 1.7e-07 59.7 50 50.0
BcaB07g32176 Brassica carinata HOM05D006879 ORTHO05D008452 2.2e-07 59.3 48 50.0
Sp1g19330 Schrenkiella parvula HOM05D006879 ORTHO05D008452 2.8e-07 58.9 50 48.0
A06p17880 Brassica napus HOM05D006879 ORTHO05D008452 8.3e-07 57.4 48 50.0
BraA06t24878Z Brassica rapa HOM05D006879 ORTHO05D008452 8.3e-07 57.4 48 50.0
Zm00001eb082730 Zea mays HOM05D006879 ORTHO05D008452 1.4e-06 56.6 55 50.9


User provided reference genes

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