Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03825 Eucalyptus grandis HOM05D003260 ORTHO05D003651 2.4e-36 154.8 72 100.0
Eucgr.H03849 Eucalyptus grandis HOM05D003260 ORTHO05D003651 6.7e-26 120.2 88 69.3
Actinidia14316 Actinidia chinensis HOM05D003260 ORTHO05D003651 3.7e-24 114.4 71 74.6
Eucgr.H03843 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.0e-21 106.3 125 48.0
Eucgr.H03854 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.9e-20 102.1 136 44.1
Eucgr.H03839 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.2e-19 99.4 115 50.4
CAN.G556.1 Capsicum annuum HOM05D003260 ORTHO05D003651 1.0e-18 96.3 136 41.2
Sopen01g029260 Solanum pennellii HOM05D003260 ORTHO05D003651 3.0e-18 94.7 136 41.2
Actinidia40234 Actinidia chinensis HOM05D003260 ORTHO05D003651 5.1e-18 94.0 136 40.4
Actinidia23419 Actinidia chinensis HOM05D003260 ORTHO05D003651 6.7e-18 93.6 136 40.4
Nn4g25978 Nelumbo nucifera HOM05D003260 ORTHO05D003651 8.7e-18 93.2 136 40.4
Solyc01g067380.4 Solanum lycopersicum HOM05D003260 ORTHO05D003651 8.7e-18 93.2 136 40.4
Sopen01g029270 Solanum pennellii HOM05D003260 ORTHO05D003651 8.7e-18 93.2 136 40.4
Lj6A670G77 Lonicera japonica HOM05D003260 ORTHO05D003651 1.9e-17 92.0 136 39.7
Rhsim04G0217500 Rhododendron simsii HOM05D003260 ORTHO05D003651 1.9e-17 92.0 136 39.7
vmacro08190 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 1.9e-17 92.0 136 40.4
GSVIVG01017792001 Vitis vinifera HOM05D003260 ORTHO05D003651 1.9e-17 92.0 136 39.0
Ciclev10005298m.g Citrus clementina HOM05D003260 ORTHO05D003651 2.5e-17 91.7 136 39.0
Dinv38316 Davidia involucrata HOM05D003260 ORTHO05D003651 2.5e-17 91.7 136 40.4
CSS0013073 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 3.3e-17 91.3 136 40.4
CSS0024611 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 3.3e-17 91.3 136 40.4
PGR031G2101 Punica granatum HOM05D003260 ORTHO05D003651 3.3e-17 91.3 136 40.4
VMungo0540G0576 Vigna mungo HOM05D003260 ORTHO05D003651 3.3e-17 91.3 136 39.0
Cc03_g02230 Coffea canephora HOM05D003260 ORTHO05D003651 5.7e-17 90.5 136 38.2
SGA_v2.0_scaffold62G21598 Striga asiatica HOM05D003260 ORTHO05D003651 5.7e-17 90.5 136 38.2
DCAR_024550 Daucus carota HOM05D003260 ORTHO05D003651 7.4e-17 90.1 136 39.7
Thecc.04G279100 Theobroma cacao HOM05D003260 ORTHO05D003651 7.4e-17 90.1 136 39.0
Aqoxy2G03084 Aquilegia oxysepala HOM05D003260 ORTHO05D003651 9.7e-17 89.7 136 39.0
Duzib052G0697 Durio zibethinus HOM05D003260 ORTHO05D003651 9.7e-17 89.7 136 38.2
Potri.010G019500 Populus trichocarpa HOM05D003260 ORTHO05D003651 9.7e-17 89.7 136 39.7
PGSC0003DMG400022655 Solanum tuberosum HOM05D003260 ORTHO05D003651 9.7e-17 89.7 136 39.0
TWI73G0946 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 9.7e-17 89.7 136 38.2
CSS0042129 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 1.6e-16 89.0 136 39.7
QL06p007594 Quercus lobata HOM05D003260 ORTHO05D003651 1.6e-16 89.0 136 38.2
Sed0004895 Sechium edule HOM05D003260 ORTHO05D003651 1.6e-16 89.0 136 39.0
TWI09G1509 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.6e-16 89.0 136 37.5
CAN.G256.11 Capsicum annuum HOM05D003260 ORTHO05D003651 2.2e-16 88.6 136 39.0
Cfa015352 Carpinus fangiana HOM05D003260 ORTHO05D003651 2.2e-16 88.6 136 39.0
LjContig00389g0009808 Lotus japonicus HOM05D003260 ORTHO05D003651 2.2e-16 88.6 136 38.2
Haze_01252 Corylus avellana HOM05D003260 ORTHO05D003651 2.8e-16 88.2 136 38.2
Psat1g187440 Pisum sativum HOM05D003260 ORTHO05D003651 2.8e-16 88.2 136 39.0
Cpa.g.sc16.128 Carica papaya HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 36.8
Cc11_g03960 Coffea canephora HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 39.0
FAN17G1896 Fragaria x ananassa HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 39.0
Manes.03G191800 Manihot esculenta HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 38.2
TWI53G0545 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 37.5
TWI53G1343 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 3.7e-16 87.8 136 37.5
Ca_00565_v3 Cicer arietinum L. HOM05D003260 ORTHO05D003651 4.8e-16 87.4 136 37.5
Eucgr.B01272 Eucalyptus grandis HOM05D003260 ORTHO05D003651 4.8e-16 87.4 136 36.8
Eucgr.L01655 Eucalyptus grandis HOM05D003260 ORTHO05D003651 4.8e-16 87.4 136 36.8
Gohir.A02G046700 Gossypium hirsutum HOM05D003260 ORTHO05D003651 4.8e-16 87.4 133 39.8
Lsat_1_v5_gn_3_25841 Lactuca sativa HOM05D003260 ORTHO05D003651 4.8e-16 87.4 136 36.8
Gorai.005G057700 Gossypium raimondii HOM05D003260 ORTHO05D003651 6.3e-16 87.0 133 39.8
Hma1.2p1_0078F.1_g040770 Hydrangea macrophylla HOM05D003260 ORTHO05D003651 6.3e-16 87.0 136 38.2
Nitab4.5_0000829g0170 Nicotiana tabacum HOM05D003260 ORTHO05D003651 6.3e-16 87.0 153 35.9
Rhsim02G0012700 Rhododendron simsii HOM05D003260 ORTHO05D003651 6.3e-16 87.0 136 38.2
CiPaw.01G152200 Carya illinoinensis HOM05D003260 ORTHO05D003651 8.2e-16 86.7 136 37.5
CDE05G3633 Ceratophyllum demersum HOM05D003260 ORTHO05D003651 8.2e-16 86.7 136 36.8
Migut.G00197 Erythranthe guttata HOM05D003260 ORTHO05D003651 8.2e-16 86.7 136 36.8
Gohir.D02G052400 Gossypium hirsutum HOM05D003260 ORTHO05D003651 8.2e-16 86.7 133 39.8
Manes.15G015900 Manihot esculenta HOM05D003260 ORTHO05D003651 8.2e-16 86.7 136 36.0
MSTRG.24781 Avicennia marina HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 37.5
ECA246G1380 Erigeron canadensis HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 36.8
FvH4_4g17380 Fragaria vesca HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 38.2
FAN12G0747 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 38.2
FAN12G1680 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 38.2
Lalb_Chr20g0118081 Lupinus albus HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 37.5
Peaxi162Scf00033g01320 Petunia axillaris HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 38.2
RcHm_v2.0_Chr4g0421311 Rosa chinensis HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 38.2
Sabra10G0010800 Salix brachista HOM05D003260 ORTHO05D003651 1.1e-15 86.3 136 37.5
Glyma.13G215800 Glycine max HOM05D003260 ORTHO05D003651 1.4e-15 85.9 136 38.2
Gorai.006G075600 Gossypium raimondii HOM05D003260 ORTHO05D003651 1.4e-15 85.9 136 37.5
Glyma.15G097100 Glycine max HOM05D003260 ORTHO05D003651 2.4e-15 85.1 136 38.2
Gohir.A09G062100 Gossypium hirsutum HOM05D003260 ORTHO05D003651 2.4e-15 85.1 136 37.5
arahy.Tifrunner.gnm1.ann1.CF3NAW Arachis hypogaea HOM05D003260 ORTHO05D003651 3.1e-15 84.7 136 37.5
CANSAT78G2310 Cannabis sativa HOM05D003260 ORTHO05D003651 3.1e-15 84.7 136 36.8
COL.COLO4_13918 Corchorus olitorius HOM05D003260 ORTHO05D003651 3.1e-15 84.7 133 38.3
Duzib212G0515 Durio zibethinus HOM05D003260 ORTHO05D003651 3.1e-15 84.7 136 36.8
Gohir.D09G061000 Gossypium hirsutum HOM05D003260 ORTHO05D003651 3.1e-15 84.7 136 36.8
DCAR_002451 Daucus carota HOM05D003260 ORTHO05D003651 4.1e-15 84.3 136 36.0
HanXRQChr06g0174191 Helianthus annuus HOM05D003260 ORTHO05D003651 4.1e-15 84.3 136 37.5
Lj3C812T21 Lonicera japonica HOM05D003260 ORTHO05D003651 4.1e-15 84.3 136 36.8
Phvul.006G162100 Phaseolus vulgaris HOM05D003260 ORTHO05D003651 4.1e-15 84.3 136 37.5
FAN23G1699 Fragaria x ananassa HOM05D003260 ORTHO05D003651 5.3e-15 84.0 136 37.5
FAN28G1362 Fragaria x ananassa HOM05D003260 ORTHO05D003651 5.3e-15 84.0 136 37.5
Nitab4.5_0001054g0020 Nicotiana tabacum HOM05D003260 ORTHO05D003651 5.3e-15 84.0 136 37.5
Nitab4.5_0001459g0100 Nicotiana tabacum HOM05D003260 ORTHO05D003651 5.3e-15 84.0 136 37.5
EL10Ac3g06566 Beta vulgaris HOM05D003260 ORTHO05D003651 6.9e-15 83.6 136 36.0
ATR0706G289 Amborella trichopoda HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 36.0
FvH4_1g25590 Fragaria vesca HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 37.5
FAN19G0011 Fragaria x ananassa HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 37.5
HanXRQChr17g0539071 Helianthus annuus HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 36.0
RcHm_v2.0_Chr2g0123761 Rosa chinensis HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 37.5
TAR636G0688 Trochodendron aralioides HOM05D003260 ORTHO05D003651 9.0e-15 83.2 136 38.2
ClCG05G005890 Citrullus lanatus HOM05D003260 ORTHO05D003651 1.2e-14 82.8 136 36.0
Medtr2g020020 Medicago truncatula HOM05D003260 ORTHO05D003651 1.2e-14 82.8 136 36.8
vmacro15254 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 1.2e-14 82.8 148 35.1
CiPaw.02G085700 Carya illinoinensis HOM05D003260 ORTHO05D003651 1.5e-14 82.4 136 37.5
Lalb_Chr18g0055681 Lupinus albus HOM05D003260 ORTHO05D003651 1.5e-14 82.4 136 35.3
Solyc06g054550.3 Solanum lycopersicum HOM05D003260 ORTHO05D003651 1.5e-14 82.4 136 36.8
PGSC0003DMG400030761 Solanum tuberosum HOM05D003260 ORTHO05D003651 1.5e-14 82.4 136 36.8
CsaV3_3G014240 Cucumis sativus L. HOM05D003260 ORTHO05D003651 2.0e-14 82.0 136 35.3
Prupe.1G140800 Prunus persica HOM05D003260 ORTHO05D003651 2.0e-14 82.0 136 36.0
Peaxi162Scf00386g00812 Petunia axillaris HOM05D003260 ORTHO05D003651 2.6e-14 81.6 163 33.1
Hund20592 Selenicereus undatus HOM05D003260 ORTHO05D003651 2.6e-14 81.6 136 35.3
Sopen06g019620 Solanum pennellii HOM05D003260 ORTHO05D003651 2.6e-14 81.6 135 37.0
PGR004G1032 Punica granatum HOM05D003260 ORTHO05D003651 3.4e-14 81.3 136 34.6
Hund24917 Selenicereus undatus HOM05D003260 ORTHO05D003651 3.4e-14 81.3 136 36.0
TPR.G1488 Trifolium pratense HOM05D003260 ORTHO05D003651 3.4e-14 81.3 136 36.0
TPR.G1524 Trifolium pratense HOM05D003260 ORTHO05D003651 3.4e-14 81.3 136 36.0
MELO3C006617.2 Cucumis melo HOM05D003260 ORTHO05D003651 4.5e-14 80.9 136 35.3
TAR633G2100 Trochodendron aralioides HOM05D003260 ORTHO05D003651 4.5e-14 80.9 136 36.0
Actinidia14317 Actinidia chinensis HOM05D003260 ORTHO05D003651 5.9e-14 80.5 136 37.5
AUR62041197 Chenopodium quinoa HOM05D003260 ORTHO05D003651 5.9e-14 80.5 136 33.8
Nn3g21340 Nelumbo nucifera HOM05D003260 ORTHO05D003651 5.9e-14 80.5 136 37.5
PSO170G5597 Papaver somniferum HOM05D003260 ORTHO05D003651 1.0e-13 79.7 137 35.8
Oeu044781.1 Olea europaea HOM05D003260 ORTHO05D003651 1.3e-13 79.3 132 37.1
THA.LOC104827117 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 1.3e-13 79.3 137 36.5
AUR62043024 Chenopodium quinoa HOM05D003260 ORTHO05D003651 1.7e-13 79.0 137 34.3
Eucgr.H03829 Eucalyptus grandis HOM05D003260 ORTHO05D003651 2.9e-13 78.2 126 38.9
THA.LOC104802724 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 3.8e-13 77.8 137 35.8
MD13G1172600 Malus domestica HOM05D003260 ORTHO05D003651 5.0e-13 77.4 136 35.3
Eucgr.H03786 Eucalyptus grandis HOM05D003260 ORTHO05D003651 6.5e-13 77.0 41 87.8
Zm00001eb285400 Zea mays HOM05D003260 ORTHO05D003651 1.9e-12 75.5 136 33.1
Os05g0372400 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 2.5e-12 75.1 136 31.6
Nitab4.5_0002986g0110 Nicotiana tabacum HOM05D003260 ORTHO05D003651 5.5e-12 73.9 126 38.1
MSTRG.10069 Avicennia marina HOM05D003260 ORTHO05D003651 7.2e-12 73.6 136 33.8
Zm00001eb141920 Zea mays HOM05D003260 ORTHO05D003651 1.2e-11 72.8 136 32.4
CARHR194390 Cardamine hirsuta HOM05D003260 ORTHO05D003651 1.6e-11 72.4 138 36.2
Thhalv10013982m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 2.7e-11 71.6 138 36.2
A02p05060 Brassica napus HOM05D003260 ORTHO05D003651 1.4e-10 69.3 137 35.8
AL6G29900 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 2.3e-10 68.6 138 33.3
C02p10110 Brassica napus HOM05D003260 ORTHO05D003651 3.0e-10 68.2 137 35.8
Sp6g25700 Schrenkiella parvula HOM05D003260 ORTHO05D003651 3.9e-10 67.8 138 34.1
arahy.Tifrunner.gnm1.ann1.S8T7D3 Arachis hypogaea HOM05D003260 ORTHO05D003651 5.1e-10 67.4 181 28.2
BcaC03g13614 Brassica carinata HOM05D003260 ORTHO05D003651 8.8e-10 66.6 137 35.0
BolC2t06910H Brassica oleracea HOM05D003260 ORTHO05D003651 8.8e-10 66.6 137 35.0
BraA02t05463Z Brassica rapa HOM05D003260 ORTHO05D003651 8.8e-10 66.6 137 35.0
AT5G18630 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 1.1e-09 66.2 138 32.6
AT5G18640 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 1.1e-09 66.2 138 34.1
HPP92_003149 Vanilla planifolia HOM05D003260 ORTHO05D003651 2.0e-09 65.5 136 28.7
Sc13g0003570 Simmondsia chinensis HOM05D003260 ORTHO05D003651 2.5e-09 65.1 42 71.4
Carub.0006s1691 Capsella rubella HOM05D003260 ORTHO05D003651 4.3e-09 64.3 138 32.6
Carub.0006s1693 Capsella rubella HOM05D003260 ORTHO05D003651 7.4e-09 63.5 138 33.3
FAN22G0635 Fragaria x ananassa HOM05D003260 ORTHO05D003651 7.4e-09 63.5 40 72.5
HanXRQChr01g0003091 Helianthus annuus HOM05D003260 ORTHO05D003651 1.3e-08 62.8 42 66.7
Aa31LG11G10980 Aethionema arabicum HOM05D003260 ORTHO05D003651 1.7e-08 62.4 138 31.9
BcaB08g36656 Brassica carinata HOM05D003260 ORTHO05D003651 1.7e-08 62.4 43 72.1
A10p20930 Brassica napus HOM05D003260 ORTHO05D003651 1.7e-08 62.4 43 72.1
C09p57820 Brassica napus HOM05D003260 ORTHO05D003651 1.7e-08 62.4 43 72.1
BolC9t58652H Brassica oleracea HOM05D003260 ORTHO05D003651 1.7e-08 62.4 43 72.1
BraA10t44158Z Brassica rapa HOM05D003260 ORTHO05D003651 1.7e-08 62.4 43 72.1
FAN07G0890 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.7e-08 62.4 42 69.0
Zm00001eb016740 Zea mays HOM05D003260 ORTHO05D003651 1.7e-08 62.4 101 35.6
AL6G29910 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 2.8e-08 61.6 43 72.1
MD16G1174000 Malus domestica HOM05D003260 ORTHO05D003651 3.7e-08 61.2 42 66.7
SalBow2G1465 Salvia bowleyana HOM05D003260 ORTHO05D003651 3.7e-08 61.2 40 67.5
Sed0005192 Sechium edule HOM05D003260 ORTHO05D003651 3.7e-08 61.2 42 64.3
vmacro22485 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 3.7e-08 61.2 30 83.3
CARHR194370 Cardamine hirsuta HOM05D003260 ORTHO05D003651 4.8e-08 60.8 43 69.8
Sp6g25695 Schrenkiella parvula HOM05D003260 ORTHO05D003651 4.8e-08 60.8 43 69.8
Actinidia08303 Actinidia chinensis HOM05D003260 ORTHO05D003651 6.3e-08 60.5 35 74.3
MELO3C021361.2 Cucumis melo HOM05D003260 ORTHO05D003651 1.1e-07 59.7 42 59.5
CsaV3_6G005740 Cucumis sativus L. HOM05D003260 ORTHO05D003651 1.1e-07 59.7 42 59.5
BcaB05g23343 Brassica carinata HOM05D003260 ORTHO05D003651 1.4e-07 59.3 43 67.4
HanXRQChr11g0349251 Helianthus annuus HOM05D003260 ORTHO05D003651 1.4e-07 59.3 42 64.3
BcaB05g23344 Brassica carinata HOM05D003260 ORTHO05D003651 1.8e-07 58.9 139 32.4
FAN22G1582 Fragaria x ananassa HOM05D016539 ORTHO05D003651 1.8e-07 58.9 30 80.0
Thhalv10013941m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 3.1e-07 58.2 43 69.8
ClCG06G005380 Citrullus lanatus HOM05D003260 ORTHO05D003651 5.3e-07 57.4 42 57.1
BolC2t06911H Brassica oleracea HOM05D003260 ORTHO05D003651 6.9e-07 57.0 139 33.1
BraA02t05464Z Brassica rapa HOM05D003260 ORTHO05D003651 6.9e-07 57.0 44 65.9
Os01g0936200 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 6.9e-07 57.0 42 59.5
Oeu062896.4 Olea europaea HOM05D003260 ORTHO05D003651 1.2e-06 56.2 30 80.0
Atru.chr4.2774 Acer truncatum HOM05D003260 ORTHO05D003651 2.0e-06 55.5 121 31.4
MD16G1174100 Malus domestica HOM05D003260 ORTHO05D003651 2.6e-06 55.1 32 75.0
HanXRQChr10g0288341 Helianthus annuus HOM05D003260 ORTHO05D003651 5.9e-06 53.9 42 61.9
Os07g0668700 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 5.9e-06 53.9 35 68.6
Pp3c7_2230 Physcomitrium patens HOM05D003260 ORTHO05D003651 7.7e-06 53.5 129 28.7


User provided reference genes

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