Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03786 Eucalyptus grandis HOM05D003260 ORTHO05D003651 2.3e-66 255.4 123 100.0
Eucgr.H03849 Eucalyptus grandis HOM05D003260 ORTHO05D003651 1.8e-42 176.0 167 58.7
Eucgr.H03843 Eucalyptus grandis HOM05D003260 ORTHO05D003651 7.6e-30 134.0 89 77.5
Eucgr.H03854 Eucalyptus grandis HOM05D003260 ORTHO05D003651 6.5e-29 131.0 89 75.3
Eucgr.H03829 Eucalyptus grandis HOM05D003260 ORTHO05D003651 3.2e-28 128.6 89 75.3
Actinidia14316 Actinidia chinensis HOM05D003260 ORTHO05D003651 1.1e-23 113.6 97 60.8
TWI09G1509 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 3.4e-22 108.6 89 59.6
TWI73G0946 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 4.5e-22 108.2 89 60.7
TAR636G0688 Trochodendron aralioides HOM05D003260 ORTHO05D003651 4.5e-22 108.2 89 60.7
Aqoxy2G03084 Aquilegia oxysepala HOM05D003260 ORTHO05D003651 1.0e-21 107.1 88 58.0
COL.COLO4_13918 Corchorus olitorius HOM05D003260 ORTHO05D003651 1.3e-21 106.7 89 58.4
TWI53G0545 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.3e-21 106.7 89 61.8
TWI53G1343 Tripterygium wilfordii HOM05D003260 ORTHO05D003651 1.3e-21 106.7 89 61.8
CSS0013073 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 5.0e-21 104.8 89 60.7
CSS0024611 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 5.0e-21 104.8 89 60.7
Manes.03G191800 Manihot esculenta HOM05D003260 ORTHO05D003651 5.0e-21 104.8 89 60.7
Ciclev10005298m.g Citrus clementina HOM05D003260 ORTHO05D003651 6.5e-21 104.4 89 57.3
PGR031G2101 Punica granatum HOM05D003260 ORTHO05D003651 6.5e-21 104.4 109 51.4
Thecc.04G279100 Theobroma cacao HOM05D003260 ORTHO05D003651 6.5e-21 104.4 89 57.3
Dinv38316 Davidia involucrata HOM05D003260 ORTHO05D003651 8.5e-21 104.0 89 60.7
Cpa.g.sc16.128 Carica papaya HOM05D003260 ORTHO05D003651 1.1e-20 103.6 89 57.3
FvH4_1g25590 Fragaria vesca HOM05D003260 ORTHO05D003651 2.5e-20 102.4 89 59.6
MD16G1174100 Malus domestica HOM05D003260 ORTHO05D003651 3.2e-20 102.1 91 58.2
TAR633G2100 Trochodendron aralioides HOM05D003260 ORTHO05D003651 3.2e-20 102.1 89 55.1
CiPaw.01G152200 Carya illinoinensis HOM05D003260 ORTHO05D003651 4.2e-20 101.7 89 57.3
FvH4_4g17380 Fragaria vesca HOM05D003260 ORTHO05D003651 4.2e-20 101.7 89 58.4
FAN12G0747 Fragaria x ananassa HOM05D003260 ORTHO05D003651 4.2e-20 101.7 89 58.4
FAN12G1680 Fragaria x ananassa HOM05D003260 ORTHO05D003651 4.2e-20 101.7 89 58.4
Nn4g25978 Nelumbo nucifera HOM05D003260 ORTHO05D003651 5.5e-20 101.3 89 57.3
Cfa015352 Carpinus fangiana HOM05D003260 ORTHO05D003651 7.2e-20 100.9 89 56.2
Duzib212G0515 Durio zibethinus HOM05D003260 ORTHO05D003651 7.2e-20 100.9 88 56.8
QL06p007594 Quercus lobata HOM05D003260 ORTHO05D003651 7.2e-20 100.9 110 49.1
MELO3C006617.2 Cucumis melo HOM05D003260 ORTHO05D003651 9.3e-20 100.5 89 56.2
FAN19G0011 Fragaria x ananassa HOM05D003260 ORTHO05D003651 9.3e-20 100.5 89 58.4
Hund24917 Selenicereus undatus HOM05D003260 ORTHO05D003651 9.3e-20 100.5 88 59.1
Haze_01252 Corylus avellana HOM05D003260 ORTHO05D003651 1.2e-19 100.1 89 55.1
FAN22G1582 Fragaria x ananassa HOM05D016539 ORTHO05D003651 1.2e-19 100.1 89 58.4
FAN23G1699 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.2e-19 100.1 89 58.4
FAN28G1362 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.2e-19 100.1 89 58.4
Gorai.005G057700 Gossypium raimondii HOM05D003260 ORTHO05D003651 1.2e-19 100.1 83 60.2
Gorai.006G075600 Gossypium raimondii HOM05D003260 ORTHO05D003651 1.2e-19 100.1 89 55.1
FAN17G1896 Fragaria x ananassa HOM05D003260 ORTHO05D003651 1.6e-19 99.8 88 58.0
RcHm_v2.0_Chr4g0421311 Rosa chinensis HOM05D003260 ORTHO05D003651 1.6e-19 99.8 89 57.3
Sed0004895 Sechium edule HOM05D003260 ORTHO05D003651 1.6e-19 99.8 89 56.2
Gohir.D02G052400 Gossypium hirsutum HOM05D003260 ORTHO05D003651 2.1e-19 99.4 81 60.5
MD13G1172600 Malus domestica HOM05D003260 ORTHO05D003651 2.1e-19 99.4 89 57.3
Gohir.A02G046700 Gossypium hirsutum HOM05D003260 ORTHO05D003651 3.6e-19 98.6 83 59.0
Gohir.A09G062100 Gossypium hirsutum HOM05D003260 ORTHO05D003651 3.6e-19 98.6 89 53.9
Manes.15G015900 Manihot esculenta HOM05D003260 ORTHO05D003651 3.6e-19 98.6 89 53.9
Potri.010G019500 Populus trichocarpa HOM05D003260 ORTHO05D003651 3.6e-19 98.6 83 62.7
Gohir.D09G061000 Gossypium hirsutum HOM05D003260 ORTHO05D003651 4.6e-19 98.2 89 53.9
Prupe.1G140800 Prunus persica HOM05D003260 ORTHO05D003651 6.1e-19 97.8 89 56.2
CsaV3_3G014240 Cucumis sativus L. HOM05D003260 ORTHO05D003651 1.4e-18 96.7 90 55.6
Sabra10G0010800 Salix brachista HOM05D003260 ORTHO05D003651 1.4e-18 96.7 81 61.7
SGA_v2.0_scaffold62G21598 Striga asiatica HOM05D003260 ORTHO05D003651 1.8e-18 96.3 91 51.6
Duzib052G0697 Durio zibethinus HOM05D003260 ORTHO05D003651 2.3e-18 95.9 89 53.9
Oeu044781.1 Olea europaea HOM05D003260 ORTHO05D003651 2.3e-18 95.9 86 57.0
Eucgr.B01272 Eucalyptus grandis HOM05D003260 ORTHO05D003651 3.0e-18 95.5 88 52.3
Eucgr.L01655 Eucalyptus grandis HOM05D003260 ORTHO05D003651 3.0e-18 95.5 88 52.3
EL10Ac3g06566 Beta vulgaris HOM05D003260 ORTHO05D003651 5.1e-18 94.7 85 55.3
Hma1.2p1_0078F.1_g040770 Hydrangea macrophylla HOM05D003260 ORTHO05D003651 5.1e-18 94.7 89 55.1
Lj3C812T21 Lonicera japonica HOM05D003260 ORTHO05D003651 5.1e-18 94.7 88 54.5
Rhsim04G0217500 Rhododendron simsii HOM05D003260 ORTHO05D003651 5.1e-18 94.7 89 55.1
RcHm_v2.0_Chr2g0123761 Rosa chinensis HOM05D003260 ORTHO05D003651 5.1e-18 94.7 89 55.1
Hund20592 Selenicereus undatus HOM05D003260 ORTHO05D003651 5.1e-18 94.7 110 46.4
Cc03_g02230 Coffea canephora HOM05D003260 ORTHO05D003651 6.7e-18 94.4 88 54.5
vmacro08190 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 6.7e-18 94.4 88 56.8
Actinidia23419 Actinidia chinensis HOM05D003260 ORTHO05D003651 1.5e-17 93.2 88 54.5
GSVIVG01017792001 Vitis vinifera HOM05D003260 ORTHO05D003651 1.5e-17 93.2 89 52.8
CSS0042129 Camellia sinensis var. sinensis HOM05D003260 ORTHO05D003651 1.9e-17 92.8 89 51.7
AUR62041197 Chenopodium quinoa HOM05D003260 ORTHO05D003651 1.9e-17 92.8 85 52.9
HanXRQChr17g0539071 Helianthus annuus HOM05D003260 ORTHO05D003651 2.5e-17 92.4 88 54.5
Lsat_1_v5_gn_3_25841 Lactuca sativa HOM05D003260 ORTHO05D003651 2.5e-17 92.4 87 51.7
Solyc06g054550.3 Solanum lycopersicum HOM05D003260 ORTHO05D003651 2.5e-17 92.4 89 57.3
Sopen06g019620 Solanum pennellii HOM05D003260 ORTHO05D003651 2.5e-17 92.4 89 57.3
PGSC0003DMG400030761 Solanum tuberosum HOM05D003260 ORTHO05D003651 3.3e-17 92.0 87 58.6
vmacro15254 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 7.4e-17 90.9 90 58.9
MSTRG.24781 Avicennia marina HOM05D003260 ORTHO05D003651 1.3e-16 90.1 110 45.5
Migut.G00197 Erythranthe guttata HOM05D003260 ORTHO05D003651 1.3e-16 90.1 89 52.8
Nitab4.5_0000829g0170 Nicotiana tabacum HOM05D003260 ORTHO05D003651 1.3e-16 90.1 91 53.8
PSO170G5597 Papaver somniferum HOM05D003260 ORTHO05D003651 1.3e-16 90.1 85 51.8
PGR004G1032 Punica granatum HOM05D003260 ORTHO05D003651 1.3e-16 90.1 78 56.4
Phvul.006G162100 Phaseolus vulgaris HOM05D003260 ORTHO05D003651 1.7e-16 89.7 89 49.4
Lj6A670G77 Lonicera japonica HOM05D003260 ORTHO05D003651 2.2e-16 89.4 89 56.2
Actinidia40234 Actinidia chinensis HOM05D003260 ORTHO05D003651 2.8e-16 89.0 71 62.0
LjContig00389g0009808 Lotus japonicus HOM05D003260 ORTHO05D003651 2.8e-16 89.0 91 51.6
Medtr2g020020 Medicago truncatula HOM05D003260 ORTHO05D003651 2.8e-16 89.0 90 51.1
Psat1g187440 Pisum sativum HOM05D003260 ORTHO05D003651 2.8e-16 89.0 88 51.1
TPR.G1524 Trifolium pratense HOM05D003260 ORTHO05D003651 2.8e-16 89.0 89 52.8
ECA246G1380 Erigeron canadensis HOM05D003260 ORTHO05D003651 3.7e-16 88.6 89 52.8
Peaxi162Scf00386g00812 Petunia axillaris HOM05D003260 ORTHO05D003651 4.8e-16 88.2 91 53.8
Rhsim02G0012700 Rhododendron simsii HOM05D003260 ORTHO05D003651 4.8e-16 88.2 88 56.8
Actinidia14317 Actinidia chinensis HOM05D003260 ORTHO05D003651 6.3e-16 87.8 89 51.7
arahy.Tifrunner.gnm1.ann1.S8T7D3 Arachis hypogaea HOM05D003260 ORTHO05D003651 6.3e-16 87.8 91 50.5
CAN.G556.1 Capsicum annuum HOM05D003260 ORTHO05D003651 6.3e-16 87.8 93 53.8
Glyma.13G215800 Glycine max HOM05D003260 ORTHO05D003651 6.3e-16 87.8 89 49.4
Glyma.15G097100 Glycine max HOM05D003260 ORTHO05D003651 6.3e-16 87.8 89 49.4
Ca_00565_v3 Cicer arietinum L. HOM05D003260 ORTHO05D003651 8.2e-16 87.4 89 49.4
ATR0706G289 Amborella trichopoda HOM05D003260 ORTHO05D003651 1.1e-15 87.0 89 47.2
CDE05G3633 Ceratophyllum demersum HOM05D003260 ORTHO05D003651 1.1e-15 87.0 88 53.4
VMungo0540G0576 Vigna mungo HOM05D003260 ORTHO05D003651 1.4e-15 86.7 89 48.3
CiPaw.02G085700 Carya illinoinensis HOM05D003260 ORTHO05D003651 2.4e-15 85.9 89 49.4
PGSC0003DMG400022655 Solanum tuberosum HOM05D003260 ORTHO05D003651 2.4e-15 85.9 89 50.6
DCAR_002451 Daucus carota HOM05D003260 ORTHO05D003651 3.1e-15 85.5 89 48.3
HanXRQChr06g0174191 Helianthus annuus HOM05D003260 ORTHO05D003651 4.1e-15 85.1 82 53.7
Lalb_Chr20g0118081 Lupinus albus HOM05D003260 ORTHO05D003651 5.3e-15 84.7 89 49.4
Zm00001eb141920 Zea mays HOM05D003260 ORTHO05D003651 5.3e-15 84.7 84 47.6
arahy.Tifrunner.gnm1.ann1.CF3NAW Arachis hypogaea HOM05D003260 ORTHO05D003651 9.1e-15 84.0 89 49.4
CANSAT78G2310 Cannabis sativa HOM05D003260 ORTHO05D003651 9.1e-15 84.0 89 44.9
DCAR_024550 Daucus carota HOM05D003260 ORTHO05D003651 9.1e-15 84.0 83 51.8
Oeu062896.4 Olea europaea HOM05D003260 ORTHO05D003651 1.2e-14 83.6 119 42.0
Cc11_g03960 Coffea canephora HOM05D003260 ORTHO05D003651 1.5e-14 83.2 88 51.1
TPR.G1488 Trifolium pratense HOM05D003260 ORTHO05D003651 1.5e-14 83.2 89 48.3
Sopen01g029260 Solanum pennellii HOM05D003260 ORTHO05D003651 2.6e-14 82.4 89 51.7
HPP92_003149 Vanilla planifolia HOM05D003260 ORTHO05D003651 2.6e-14 82.4 108 38.9
Nitab4.5_0001459g0100 Nicotiana tabacum HOM05D003260 ORTHO05D003651 5.9e-14 81.3 90 52.2
Solyc01g067380.4 Solanum lycopersicum HOM05D003260 ORTHO05D003651 5.9e-14 81.3 89 50.6
Sopen01g029270 Solanum pennellii HOM05D003260 ORTHO05D003651 5.9e-14 81.3 89 50.6
CAN.G256.11 Capsicum annuum HOM05D003260 ORTHO05D003651 7.7e-14 80.9 89 51.7
Lalb_Chr18g0055681 Lupinus albus HOM05D003260 ORTHO05D003651 1.3e-13 80.1 89 44.9
Zm00001eb285400 Zea mays HOM05D003260 ORTHO05D003651 1.3e-13 80.1 90 41.1
ClCG06G005380 Citrullus lanatus HOM05D003260 ORTHO05D003651 1.7e-13 79.7 73 58.9
Peaxi162Scf00033g01320 Petunia axillaris HOM05D003260 ORTHO05D003651 2.9e-13 79.0 90 51.1
CsaV3_6G005740 Cucumis sativus L. HOM05D003260 ORTHO05D003651 5.0e-13 78.2 73 56.2
Nitab4.5_0001054g0020 Nicotiana tabacum HOM05D003260 ORTHO05D003651 6.5e-13 77.8 90 51.1
Eucgr.H03825 Eucalyptus grandis HOM05D003260 ORTHO05D003651 8.5e-13 77.4 41 87.8
CARHR194390 Cardamine hirsuta HOM05D003260 ORTHO05D003651 1.1e-12 77.0 81 49.4
AL6G29910 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 3.2e-12 75.5 75 50.7
Os05g0372400 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 3.2e-12 75.5 88 38.6
AT5G18640 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 4.2e-12 75.1 75 50.7
Carub.0006s1693 Capsella rubella HOM05D003260 ORTHO05D003651 5.5e-12 74.7 71 53.5
MELO3C021361.2 Cucumis melo HOM05D003260 ORTHO05D003651 5.5e-12 74.7 73 54.8
A10p20930 Brassica napus HOM05D003260 ORTHO05D003651 7.2e-12 74.3 77 49.4
C09p57820 Brassica napus HOM05D003260 ORTHO05D003651 7.2e-12 74.3 77 49.4
BraA10t44158Z Brassica rapa HOM05D003260 ORTHO05D003651 9.4e-12 73.9 94 47.9
Thhalv10013941m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 9.4e-12 73.9 78 47.4
THA.LOC104827117 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 9.4e-12 73.9 85 49.4
AL6G29900 Arabidopsis lyrata HOM05D003260 ORTHO05D003651 1.2e-11 73.6 78 47.4
C02p10110 Brassica napus HOM05D003260 ORTHO05D003651 1.2e-11 73.6 72 51.4
BolC2t06910H Brassica oleracea HOM05D003260 ORTHO05D003651 1.2e-11 73.6 72 51.4
CARHR194370 Cardamine hirsuta HOM05D003260 ORTHO05D003651 1.2e-11 73.6 70 50.0
BcaB08g36656 Brassica carinata HOM05D003260 ORTHO05D003651 1.6e-11 73.2 86 48.8
BolC9t58652H Brassica oleracea HOM05D003260 ORTHO05D003651 1.6e-11 73.2 94 46.8
A02p05060 Brassica napus HOM05D003260 ORTHO05D003651 2.1e-11 72.8 79 48.1
Sp6g25695 Schrenkiella parvula HOM05D003260 ORTHO05D003651 2.1e-11 72.8 73 50.7
THA.LOC104802724 Tarenaya hassleriana HOM05D003260 ORTHO05D003651 2.1e-11 72.8 82 48.8
Aa31LG11G10980 Aethionema arabicum HOM05D003260 ORTHO05D003651 4.7e-11 71.6 70 47.1
BcaC03g13614 Brassica carinata HOM05D003260 ORTHO05D003651 4.7e-11 71.6 71 50.7
Nitab4.5_0002986g0110 Nicotiana tabacum HOM05D003260 ORTHO05D003651 4.7e-11 71.6 78 48.7
BraA02t05463Z Brassica rapa HOM05D003260 ORTHO05D003651 7.9e-11 70.9 71 50.7
Sp6g25700 Schrenkiella parvula HOM05D003260 ORTHO05D003651 7.9e-11 70.9 77 48.1
Thhalv10013982m.g Eutrema salsugineum HOM05D003260 ORTHO05D003651 1.0e-10 70.5 77 48.1
Carub.0006s1691 Capsella rubella HOM05D003260 ORTHO05D003651 1.4e-10 70.1 70 48.6
Sed0005192 Sechium edule HOM05D003260 ORTHO05D003651 1.4e-10 70.1 79 48.1
AT5G18630 Arabidopsis thaliana HOM05D003260 ORTHO05D003651 1.8e-10 69.7 77 46.8
BcaB05g23343 Brassica carinata HOM05D003260 ORTHO05D003651 1.8e-10 69.7 73 50.7
BolC2t06911H Brassica oleracea HOM05D003260 ORTHO05D003651 3.9e-10 68.6 68 47.1
ClCG05G005890 Citrullus lanatus HOM05D003260 ORTHO05D003651 3.9e-10 68.6 83 44.6
BcaB05g23344 Brassica carinata HOM05D003260 ORTHO05D003651 5.1e-10 68.2 66 48.5
Eucgr.H03839 Eucalyptus grandis HOM05D003260 ORTHO05D003651 5.1e-10 68.2 52 69.2
SalBow5G1864 Salvia bowleyana HOM05D003260 ORTHO05D003651 5.7e-09 64.7 101 38.6
SalBow2G1465 Salvia bowleyana HOM05D003260 ORTHO05D003651 3.7e-08 62.0 63 49.2
vmacro22485 Vaccinium macrocarpon HOM05D003260 ORTHO05D003651 8.2e-08 60.8 47 66.0
Zm00001eb330150 Zea mays HOM05D003260 ORTHO05D003651 9.1e-07 57.4 67 35.8
Zm00001eb165770 Zea mays HOM05D003260 ORTHO05D003651 2.0e-06 56.2 75 41.3
Os11g0655800 Oryza sativa ssp. japonica HOM05D003260 ORTHO05D003651 4.5e-06 55.1 69 40.6


User provided reference genes

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