Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.5e-50 201.8 103 100.0
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.4e-37 157.5 95 85.3
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.6e-25 119.4 90 67.8
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.8e-25 118.6 96 66.7
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-24 116.3 90 65.6
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 4.0e-24 114.8 88 65.9
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.0e-24 114.8 90 65.6
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 1.2e-23 113.2 88 63.6
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.5e-23 112.8 90 62.2
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 7.6e-23 110.5 88 64.8
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.3e-22 109.8 97 61.9
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.7e-22 109.4 88 61.4
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 2.9e-22 108.6 88 62.5
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.9e-22 108.6 93 59.1
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 3.8e-22 108.2 90 60.0
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 3.8e-22 108.2 93 59.1
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 4.9e-22 107.8 96 58.3
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 6.4e-22 107.5 91 60.4
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 8.4e-22 107.1 90 56.7
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 8.4e-22 107.1 90 58.9
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.4e-21 106.3 93 58.1
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.2e-21 105.1 97 63.9
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 3.2e-21 105.1 90 63.3
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 3.2e-21 105.1 93 55.9
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 4.2e-21 104.8 87 57.5
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.4e-21 104.4 95 55.8
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 5.4e-21 104.4 90 61.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 5.4e-21 104.4 90 60.0
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 6.0e-20 100.9 87 60.9
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 7.8e-20 100.5 87 56.3
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 1.0e-19 100.1 87 54.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 1.7e-19 99.4 91 54.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.7e-19 99.4 87 59.8
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.3e-19 99.0 96 54.2
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.0e-19 98.6 87 51.7
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.0e-19 98.6 91 51.6
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.0e-19 98.6 88 60.2
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 3.0e-19 98.6 96 53.1
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 3.9e-19 98.2 103 49.5
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.9e-19 98.2 87 52.9
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.9e-19 98.2 87 51.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.9e-19 98.2 87 51.7
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 3.9e-19 98.2 87 51.7
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.9e-19 98.2 87 51.7
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.9e-19 98.2 97 52.6
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 5.1e-19 97.8 87 52.9
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 5.1e-19 97.8 96 53.1
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.1e-19 97.8 87 54.0
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 6.6e-19 97.4 87 51.7
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 6.6e-19 97.4 87 54.0
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 6.6e-19 97.4 88 51.1
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 8.7e-19 97.1 87 51.7
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 1.1e-18 96.7 88 58.0
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.1e-18 96.7 93 48.4
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.5e-18 96.3 88 55.7
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.5e-18 96.3 97 62.9
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.5e-18 96.3 96 53.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.5e-18 96.3 88 51.1
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.9e-18 95.9 87 50.6
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.9e-18 95.9 97 61.9
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.5e-18 95.5 93 53.8
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.5e-18 95.5 87 52.9
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.3e-18 95.1 88 54.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 3.3e-18 95.1 93 50.5
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 4.3e-18 94.7 87 49.4
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 4.3e-18 94.7 87 49.4
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 4.3e-18 94.7 87 52.9
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 9.6e-18 93.6 90 51.1
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 9.6e-18 93.6 87 55.2
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 9.6e-18 93.6 87 50.6
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.3e-17 93.2 93 49.5
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.3e-17 93.2 87 54.0
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.6e-17 92.8 85 50.6
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.1e-17 92.4 97 61.9
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.1e-17 92.4 88 47.7
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.8e-17 92.0 85 55.3
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 2.8e-17 92.0 84 54.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.6e-17 91.7 85 55.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 3.6e-17 91.7 88 48.9
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.6e-17 91.7 88 46.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.8e-17 91.3 93 47.3
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.1e-16 90.1 88 50.0
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.4e-16 89.7 88 47.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 1.8e-16 89.4 91 48.4
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 2.4e-16 89.0 88 53.4
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.4e-16 89.0 105 58.1
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 2.4e-16 89.0 93 50.5
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 9.0e-16 87.0 85 48.2
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 9.0e-16 87.0 87 52.9
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.5e-15 86.3 88 48.9
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.6e-15 85.5 87 47.1
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 9.9e-15 83.6 87 46.0
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 2.2e-14 82.4 79 55.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 3.8e-14 81.6 87 49.4
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 6.4e-14 80.9 90 42.2
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.4e-13 79.7 104 42.3
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.4e-13 79.0 83 57.8
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 7.1e-13 77.4 72 63.9
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 9.3e-13 77.0 98 41.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.2e-12 76.6 93 41.9
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 3.0e-11 72.0 57 66.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 5.1e-11 71.2 89 39.3
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 8.7e-11 70.5 58 53.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 8.7e-11 70.5 84 45.2
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 4.3e-10 68.2 56 55.4
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 9.6e-10 67.0 91 39.6
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 3.6e-09 65.1 85 44.7
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.1e-08 63.5 82 43.9
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 1.5e-07 59.7 62 45.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 4.9e-06 54.7 67 40.3


User provided reference genes

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