Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.0e-41 172.9 86 100.0
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.4e-14 82.0 40 90.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.7e-12 75.9 40 80.0
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 8.6e-12 73.6 40 77.5
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 1.5e-11 72.8 40 77.5
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.9e-11 72.4 40 75.0
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.5e-11 72.0 40 72.5
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 9.5e-11 70.1 40 70.0
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 2.1e-10 68.9 44 63.6
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 2.1e-10 68.9 44 63.6
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.8e-10 68.6 46 63.0
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.7e-10 67.8 39 69.2
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 6.1e-10 67.4 40 67.5
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 8.0e-10 67.0 63 54.0
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 8.0e-10 67.0 39 69.2
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 1.0e-09 66.6 40 72.5
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 1.4e-09 66.2 38 71.1
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.4e-09 66.2 41 63.4
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.4e-09 66.2 40 65.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.4e-09 66.2 70 47.1
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 1.8e-09 65.9 40 62.5
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.8e-09 65.9 77 42.9
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 3.0e-09 65.1 39 66.7
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.0e-09 65.1 41 61.0
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 3.0e-09 65.1 40 62.5
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 3.0e-09 65.1 40 70.0
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 4.0e-09 64.7 38 65.8
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.0e-09 64.7 40 62.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.0e-09 64.7 40 62.5
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 4.0e-09 64.7 40 65.0
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 4.0e-09 64.7 39 66.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 5.2e-09 64.3 37 70.3
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 6.8e-09 63.9 38 65.8
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 6.8e-09 63.9 40 70.0
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 6.8e-09 63.9 40 70.0
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 6.8e-09 63.9 40 67.5
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 8.9e-09 63.5 40 62.5
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 8.9e-09 63.5 41 63.4
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 8.9e-09 63.5 41 63.4
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 1.2e-08 63.2 63 50.8
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.2e-08 63.2 39 66.7
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.2e-08 63.2 39 66.7
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.2e-08 63.2 39 64.1
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 1.2e-08 63.2 39 66.7
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.5e-08 62.8 38 63.2
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 1.5e-08 62.8 38 63.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 1.5e-08 62.8 39 64.1
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.5e-08 62.8 40 62.5
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.0e-08 62.4 39 61.5
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.0e-08 62.4 46 52.2
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.0e-08 62.4 40 70.0
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 2.0e-08 62.4 40 67.5
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 2.0e-08 62.4 43 58.1
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 2.0e-08 62.4 41 58.5
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 2.6e-08 62.0 40 62.5
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 2.6e-08 62.0 39 64.1
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 3.4e-08 61.6 40 60.0
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 3.4e-08 61.6 39 61.5
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.4e-08 61.6 39 61.5
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 4.4e-08 61.2 41 65.9
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 5.7e-08 60.8 40 62.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 5.7e-08 60.8 46 58.7
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 5.7e-08 60.8 40 62.5
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.7e-08 60.8 38 63.2
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.7e-08 60.8 40 62.5
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 5.7e-08 60.8 40 62.5
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 7.5e-08 60.5 38 60.5
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 7.5e-08 60.5 37 59.5
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 7.5e-08 60.5 40 60.0
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 7.5e-08 60.5 38 63.2
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 9.8e-08 60.1 68 45.6
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 9.8e-08 60.1 45 55.6
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 1.3e-07 59.7 39 61.5
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.7e-07 59.3 46 58.7
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.7e-07 59.3 81 37.0
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.7e-07 59.3 38 63.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 2.2e-07 58.9 36 63.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 2.2e-07 58.9 35 77.1
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.2e-07 58.9 43 55.8
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.2e-07 58.9 38 60.5
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.8e-07 58.5 46 52.2
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.8e-07 58.5 39 66.7
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.8e-07 58.5 39 66.7
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 3.7e-07 58.2 40 57.5
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.9e-07 57.8 38 63.2
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.4e-06 56.2 40 57.5
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 1.8e-06 55.8 39 59.0
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.8e-06 55.8 39 59.0
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 1.8e-06 55.8 39 59.0
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.8e-06 55.8 39 53.8
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 2.4e-06 55.5 39 56.4
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 2.4e-06 55.5 42 54.8
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.4e-06 55.5 58 46.6
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.4e-06 55.5 40 55.0
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 2.4e-06 55.5 40 57.5
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 2.4e-06 55.5 42 54.8
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.1e-06 54.7 38 55.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.1e-06 54.7 39 53.8
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 5.4e-06 54.3 45 51.1
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 5.4e-06 54.3 40 55.0
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 5.4e-06 54.3 40 57.5
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 7.0e-06 53.9 40 57.5
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 7.0e-06 53.9 40 57.5
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 9.2e-06 53.5 43 53.5


User provided reference genes

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