Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03675 Eucalyptus grandis HOM05D006941 ORTHO05D008361 1.0e-37 159.5 75 100.0
Haze_01039 Corylus avellana HOM05D006941 ORTHO05D008361 2.6e-12 75.1 51 66.7
Manes.14G117300 Manihot esculenta HOM05D006941 ORTHO05D008361 3.7e-11 71.2 39 79.5
Cfa015511 Carpinus fangiana HOM05D006941 ORTHO05D008361 4.8e-11 70.9 42 71.4
TWI53G0190 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 6.3e-11 70.5 39 79.5
Eucgr.H03674 Eucalyptus grandis HOM05D025724 ORTHO05D008361 1.1e-10 69.7 43 74.4
Gohir.A02G045400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.1e-10 69.7 39 76.9
Gohir.D02G051400 Gossypium hirsutum HOM05D006941 ORTHO05D008361 1.1e-10 69.7 39 76.9
Gorai.005G056700 Gossypium raimondii HOM05D006941 ORTHO05D008361 1.1e-10 69.7 39 76.9
vmacro15274 Vaccinium macrocarpon HOM05D006941 ORTHO05D008361 1.1e-10 69.7 42 69.0
HanXRQChr15g0466771 Helianthus annuus HOM05D006941 ORTHO05D008361 1.4e-10 69.3 40 77.5
Lsat_1_v5_gn_2_28060 Lactuca sativa HOM05D006941 ORTHO05D008361 1.8e-10 68.9 66 59.1
PGR004G2827 Punica granatum HOM05D006941 ORTHO05D008361 1.8e-10 68.9 39 76.9
SGA_v2.0_scaffold114G31931 Striga asiatica HOM05D006941 ORTHO05D008361 1.8e-10 68.9 45 66.7
SGA_v2.0_scaffold57G20266 Striga asiatica HOM05D006941 ORTHO05D008361 1.8e-10 68.9 43 67.4
FvH4_4g16990 Fragaria vesca HOM05D006941 ORTHO05D008361 2.4e-10 68.6 38 78.9
FAN07G2315 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.4e-10 68.6 38 78.9
FAN12G1403 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.4e-10 68.6 38 78.9
FAN12G3786 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.4e-10 68.6 38 78.9
Eucgr.H03682 Eucalyptus grandis HOM05D006941 ORTHO05D008361 4.1e-10 67.8 39 76.9
Eucgr.H03704 Eucalyptus grandis HOM05D006941 ORTHO05D008361 4.1e-10 67.8 39 76.9
Eucgr.H03709 Eucalyptus grandis HOM05D006941 ORTHO05D008361 4.1e-10 67.8 39 76.9
Manes.03G190000 Manihot esculenta HOM05D006941 ORTHO05D008361 4.1e-10 67.8 39 74.4
TWI09G0325 Tripterygium wilfordii HOM05D006941 ORTHO05D008361 5.3e-10 67.4 39 76.9
CANSAT78G0092 Cannabis sativa HOM05D006941 ORTHO05D008361 7.0e-10 67.0 38 76.3
COL.COLO4_13955 Corchorus olitorius HOM05D006941 ORTHO05D008361 7.0e-10 67.0 41 70.7
Sabra05G0058700 Salix brachista HOM05D006941 ORTHO05D008361 7.0e-10 67.0 40 72.5
HanXRQChr05g0154771 Helianthus annuus HOM05D006941 ORTHO05D008361 9.1e-10 66.6 38 78.9
Thecc.04G275300 Theobroma cacao HOM05D006941 ORTHO05D008361 9.1e-10 66.6 39 71.8
Carub.0005s2918 Capsella rubella HOM05D006941 ORTHO05D008361 1.2e-09 66.2 38 76.3
vmacro16859 Vaccinium macrocarpon HOM05D000537 ORTHO05D000415 1.2e-09 66.2 38 73.7
Duzib151G0434 Durio zibethinus HOM05D006941 ORTHO05D008361 1.6e-09 65.9 39 74.4
FAN17G2868 Fragaria x ananassa HOM05D006941 ORTHO05D008361 2.0e-09 65.5 38 76.3
Prupe.1G143700 Prunus persica HOM05D006941 ORTHO05D008361 2.0e-09 65.5 38 73.7
CiPaw.02G087700 Carya illinoinensis HOM05D006941 ORTHO05D008361 2.7e-09 65.1 39 69.2
RcHm_v2.0_Chr4g0420661 Rosa chinensis HOM05D006941 ORTHO05D008361 2.7e-09 65.1 38 76.3
Sabra07G0080600 Salix brachista HOM05D006941 ORTHO05D008361 2.7e-09 65.1 44 63.6
Sc19g0004830 Simmondsia chinensis HOM05D006941 ORTHO05D008361 2.7e-09 65.1 46 65.2
Ciclev10006724m.g Citrus clementina HOM05D006941 ORTHO05D008361 3.5e-09 64.7 39 71.8
Potri.005G071700 Populus trichocarpa HOM05D006941 ORTHO05D008361 3.5e-09 64.7 39 71.8
QL06p006942 Quercus lobata HOM05D006941 ORTHO05D008361 3.5e-09 64.7 39 66.7
MSTRG.24772 Avicennia marina HOM05D006941 ORTHO05D008361 4.5e-09 64.3 39 69.2
ECA233G1626 Erigeron canadensis HOM05D006941 ORTHO05D008361 4.5e-09 64.3 39 74.4
FAN22G2172 Fragaria x ananassa HOM05D006941 ORTHO05D008361 4.5e-09 64.3 38 76.3
Os11g0107450 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 4.5e-09 64.3 37 75.7
Thhalv10006352m.g Eutrema salsugineum HOM05D006941 ORTHO05D008361 7.7e-09 63.5 39 74.4
MD16G1176900 Malus domestica HOM05D006941 ORTHO05D008361 7.7e-09 63.5 38 76.3
Oeu010965.1 Olea europaea HOM05D006941 ORTHO05D008361 7.7e-09 63.5 36 75.0
Lalb_Chr14g0364951 Lupinus albus HOM05D006941 ORTHO05D008361 1.0e-08 63.2 38 76.3
Lalb_Chr22g0358511 Lupinus albus HOM05D006941 ORTHO05D008361 1.0e-08 63.2 38 76.3
Oeu029280.1 Olea europaea HOM05D006941 ORTHO05D008361 1.0e-08 63.2 39 69.2
Oeu048197.1 Olea europaea HOM05D010625 ORTHO05D008361 1.0e-08 63.2 37 70.3
Actinidia32379 Actinidia chinensis HOM05D006941 ORTHO05D008361 1.7e-08 62.4 41 65.9
arahy.Tifrunner.gnm1.ann1.DDI179 Arachis hypogaea HOM05D006941 ORTHO05D008361 1.7e-08 62.4 38 71.1
CSS0029112 Camellia sinensis var. sinensis HOM05D006941 ORTHO05D008361 1.7e-08 62.4 39 69.2
CARHR172790 Cardamine hirsuta HOM05D006941 ORTHO05D008361 1.7e-08 62.4 39 66.7
Lj5g0014316 Lotus japonicus HOM05D006941 ORTHO05D008361 1.7e-08 62.4 35 80.0
Sp5g00970 Schrenkiella parvula HOM05D006941 ORTHO05D008361 1.7e-08 62.4 39 71.8
Solyc01g067820.3 Solanum lycopersicum HOM05D006941 ORTHO05D008361 1.7e-08 62.4 39 66.7
PGSC0003DMG400022846 Solanum tuberosum HOM05D006941 ORTHO05D008361 1.7e-08 62.4 39 66.7
arahy.Tifrunner.gnm1.ann1.UB09PE Arachis hypogaea HOM05D006941 ORTHO05D008361 2.2e-08 62.0 40 67.5
BcaC07g40728 Brassica carinata HOM05D006941 ORTHO05D008361 2.2e-08 62.0 37 75.7
C08p37290 Brassica napus HOM05D006941 ORTHO05D008361 2.2e-08 62.0 36 77.8
BolC8t51307H Brassica oleracea HOM05D006941 ORTHO05D008361 2.2e-08 62.0 36 77.8
BcaC07g42761 Brassica carinata HOM05D006941 ORTHO05D008361 2.9e-08 61.6 36 77.8
A09p54410 Brassica napus HOM05D006941 ORTHO05D008361 2.9e-08 61.6 36 77.8
BraA09t40854Z Brassica rapa HOM05D006941 ORTHO05D008361 2.9e-08 61.6 36 77.8
ClCG06G005480 Citrullus lanatus HOM05D006941 ORTHO05D008361 2.9e-08 61.6 37 75.7
Os12g0106550 Oryza sativa ssp. japonica HOM05D006941 ORTHO05D008361 2.9e-08 61.6 37 73.0
Hund22020 Selenicereus undatus HOM05D006941 ORTHO05D008361 2.9e-08 61.6 40 67.5
Zm00001eb163280 Zea mays HOM05D006941 ORTHO05D008361 2.9e-08 61.6 38 68.4
Lj4g0022805 Lotus japonicus HOM05D006941 ORTHO05D008361 3.8e-08 61.2 36 77.8
Nitab4.5_0001624g0050 Nicotiana tabacum HOM05D006941 ORTHO05D008361 3.8e-08 61.2 39 66.7
Rhsim02G0014500 Rhododendron simsii HOM05D006941 ORTHO05D008361 3.8e-08 61.2 39 69.2
VMungo0720G2266 Vigna mungo HOM05D006941 ORTHO05D008361 3.8e-08 61.2 42 69.0
Sed0004518 Sechium edule HOM05D006941 ORTHO05D008361 5.0e-08 60.8 34 79.4
Sopen01g029770 Solanum pennellii HOM05D006941 ORTHO05D008361 5.0e-08 60.8 39 64.1
VMungo0464G0431 Vigna mungo HOM05D006941 ORTHO05D008361 5.0e-08 60.8 35 77.1
Phvul.007G158300 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 8.5e-08 60.1 35 74.3
Migut.G00223 Erythranthe guttata HOM05D006941 ORTHO05D008361 1.1e-07 59.7 33 78.8
Zm00001eb094170 Zea mays HOM05D006941 ORTHO05D008361 1.1e-07 59.7 38 65.8
Atru.chr4.2738 Acer truncatum HOM05D006941 ORTHO05D008361 1.5e-07 59.3 36 72.2
CAN.G1327.4 Capsicum annuum HOM05D006941 ORTHO05D008361 1.5e-07 59.3 39 64.1
Peaxi162Scf01067g00024 Petunia axillaris HOM05D006941 ORTHO05D008361 1.5e-07 59.3 38 65.8
Ca_09608_v3 Cicer arietinum L. HOM05D006941 ORTHO05D008361 1.9e-07 58.9 35 74.3
Glyma.10G044600 Glycine max HOM05D006941 ORTHO05D008361 1.9e-07 58.9 35 74.3
Glyma.13G132200 Glycine max HOM05D006941 ORTHO05D008361 1.9e-07 58.9 35 74.3
Phvul.010G109000 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.9e-07 58.9 38 65.8
Phvul.L002281 Phaseolus vulgaris HOM05D006941 ORTHO05D008361 1.9e-07 58.9 38 65.8
AL5G45260 Arabidopsis lyrata HOM05D006941 ORTHO05D008361 2.5e-07 58.5 38 68.4
SHI00325 Sapria himalayana HOM05D006941 ORTHO05D008361 3.2e-07 58.2 40 62.5
Atru.chr2.2418 Acer truncatum HOM05D006941 ORTHO05D008361 4.2e-07 57.8 35 71.4
EL10As5g23584 Beta vulgaris HOM05D006941 ORTHO05D008361 5.5e-07 57.4 39 71.8
PSO302G0016 Papaver somniferum HOM05D006941 ORTHO05D008361 5.5e-07 57.4 38 65.8
AT3G62450 Arabidopsis thaliana HOM05D006941 ORTHO05D008361 7.2e-07 57.0 38 65.8
DCAR_030574 Daucus carota HOM05D006941 ORTHO05D008361 7.2e-07 57.0 39 64.1
Psat6g067840 Pisum sativum HOM05D006941 ORTHO05D008361 1.2e-06 56.2 33 72.7
SalBow1G8344 Salvia bowleyana HOM05D006941 ORTHO05D008361 1.6e-06 55.8 39 61.5
PGSC0003DMG400029912 Solanum tuberosum HOM05D006941 ORTHO05D008361 2.1e-06 55.5 35 68.6
Aa31LG10G16360 Aethionema arabicum HOM05D006941 ORTHO05D008361 4.7e-06 54.3 34 73.5
unitig_22.g6332 Utricularia gibba HOM05D006941 ORTHO05D008361 4.7e-06 54.3 35 65.7
BcaB02g07336 Brassica carinata HOM05D006941 ORTHO05D008361 6.1e-06 53.9 30 80.0
Medtr1g068580 Medicago truncatula HOM05D006941 ORTHO05D008361 6.1e-06 53.9 35 71.4
Medtr2g005070 Medicago truncatula HOM05D006941 ORTHO05D008361 6.1e-06 53.9 35 71.4


User provided reference genes

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