Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03650 Eucalyptus grandis HOM05D001921 ORTHO05D001784 3.1e-76 288.5 157 100.0
Sed0007577 Sechium edule HOM05D001921 ORTHO05D001784 1.2e-22 110.5 197 47.7
Prupe.1G145900 Prunus persica HOM05D001921 ORTHO05D001784 9.8e-22 107.5 184 44.6
Haze_01021 Corylus avellana HOM05D001921 ORTHO05D001784 1.7e-21 106.7 201 44.8
PGR031G1199 Punica granatum HOM05D001921 ORTHO05D001784 6.3e-21 104.8 189 43.4
Cfa015526 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.1e-20 104.0 200 44.5
CiPaw.02G088800 Carya illinoinensis HOM05D001921 ORTHO05D001784 4.1e-20 102.1 199 43.7
Sed0022941 Sechium edule HOM05D001921 ORTHO05D001784 5.4e-20 101.7 171 48.0
Phvul.006G158900 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 7.0e-20 101.3 179 42.5
MELO3C021383.2 Cucumis melo HOM05D001921 ORTHO05D001784 1.2e-19 100.5 202 43.6
CsaV3_6G005540 Cucumis sativus L. HOM05D001921 ORTHO05D001784 1.2e-19 100.5 202 44.1
Cpa.g.sc16.79 Carica papaya HOM05D001921 ORTHO05D001784 7.7e-19 97.8 203 41.4
Hma1.2p1_0511F.1_g169240 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.7e-19 97.8 179 40.8
ClCG06G005610 Citrullus lanatus HOM05D001921 ORTHO05D001784 1.7e-18 96.7 198 42.4
Hma1.2p1_0643F.1_g194540 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 2.9e-18 95.9 203 37.4
Lj6g0003156 Lotus japonicus HOM05D001921 ORTHO05D001784 6.5e-18 94.7 182 42.3
Lj6g0019677 Lotus japonicus HOM05D001921 ORTHO05D001784 6.5e-18 94.7 182 42.3
Glyma.15G100300 Glycine max HOM05D001921 ORTHO05D001784 8.6e-18 94.4 176 43.2
arahy.Tifrunner.gnm1.ann1.288BMH Arachis hypogaea HOM05D001921 ORTHO05D001784 1.1e-17 94.0 204 38.2
VMungo0540G1436 Vigna mungo HOM05D001921 ORTHO05D001784 1.1e-17 94.0 180 42.2
arahy.Tifrunner.gnm1.ann1.XA6I97 Arachis hypogaea HOM05D001921 ORTHO05D001784 1.5e-17 93.6 204 38.2
Manes.15G019800 Manihot esculenta HOM05D001921 ORTHO05D001784 1.9e-17 93.2 214 39.7
Duzib151G0850 Durio zibethinus HOM05D001921 ORTHO05D001784 2.5e-17 92.8 195 39.5
PGR004G0777 Punica granatum HOM05D001921 ORTHO05D001784 3.3e-17 92.4 193 41.5
Glyma.17G021000 Glycine max HOM05D001921 ORTHO05D001784 4.2e-17 92.0 165 44.2
QL06p006408 Quercus lobata HOM05D001921 ORTHO05D001784 4.2e-17 92.0 206 39.8
Thecc.04G273300 Theobroma cacao HOM05D001921 ORTHO05D001784 4.2e-17 92.0 196 42.3
Gohir.A09G060900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.6e-16 90.1 197 38.1
Glyma.13G212500 Glycine max HOM05D001921 ORTHO05D001784 2.1e-16 89.7 182 40.1
PGSC0003DMG400030765 Solanum tuberosum HOM05D001921 ORTHO05D001784 2.1e-16 89.7 183 41.0
TAR365G0872 Trochodendron aralioides HOM05D001921 ORTHO05D001784 2.8e-16 89.4 191 39.3
Duzib212G0985 Durio zibethinus HOM05D001921 ORTHO05D001784 3.6e-16 89.0 195 40.5
Gohir.D09G059900 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.7e-16 88.6 201 37.8
Gohir.D10G163601 Gossypium hirsutum HOM05D001921 ORTHO05D001784 4.7e-16 88.6 199 41.7
Gorai.011G182400 Gossypium raimondii HOM05D001921 ORTHO05D001784 4.7e-16 88.6 199 41.7
Gorai.006G074600 Gossypium raimondii HOM05D001921 ORTHO05D001784 8.0e-16 87.8 201 37.8
Nitab4.5_0009936g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 1.0e-15 87.4 166 39.2
Gohir.A10G105100 Gossypium hirsutum HOM05D001921 ORTHO05D001784 1.4e-15 87.0 199 41.2
CANSAT78G1722 Cannabis sativa HOM05D001921 ORTHO05D001784 1.8e-15 86.7 200 37.5
CiPaw.01G156200 Carya illinoinensis HOM05D001921 ORTHO05D001784 1.8e-15 86.7 199 40.2
Glyma.07G253400 Glycine max HOM05D001921 ORTHO05D001784 3.0e-15 85.9 165 42.4
TAR362G1200 Trochodendron aralioides HOM05D001921 ORTHO05D001784 3.0e-15 85.9 181 40.9
FAN17G2860 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.0e-15 85.5 184 39.7
Nitab4.5_0002295g0070 Nicotiana tabacum HOM05D001921 ORTHO05D001784 4.0e-15 85.5 166 39.8
Rhsim02G0016000 Rhododendron simsii HOM05D001921 ORTHO05D001784 6.8e-15 84.7 208 36.5
Solyc06g054470.1 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.0e-14 83.2 183 39.9
DCAR_023282 Daucus carota HOM05D001921 ORTHO05D001784 4.4e-14 82.0 180 40.6
TAR636G3386 Trochodendron aralioides HOM05D001921 ORTHO05D001784 4.4e-14 82.0 180 38.3
Potri.010G027500 Populus trichocarpa HOM05D001921 ORTHO05D001784 7.5e-14 81.3 208 35.6
FvH4_4g16740 Fragaria vesca HOM05D001921 ORTHO05D001784 9.8e-14 80.9 186 38.2
FAN12G2234 Fragaria x ananassa HOM05D001921 ORTHO05D001784 9.8e-14 80.9 186 38.2
FAN12G3386 Fragaria x ananassa HOM05D001921 ORTHO05D001784 9.8e-14 80.9 186 38.2
FAN22G2319 Fragaria x ananassa HOM05D001921 ORTHO05D001784 9.8e-14 80.9 181 38.1
RcHm_v2.0_Chr4g0420321 Rosa chinensis HOM05D001921 ORTHO05D001784 9.8e-14 80.9 168 38.7
Manes.03G188600 Manihot esculenta HOM05D001921 ORTHO05D001784 1.3e-13 80.5 218 38.1
Atru.chr4.2710 Acer truncatum HOM05D001921 ORTHO05D001784 1.7e-13 80.1 189 36.5
Sc15g0003760 Simmondsia chinensis HOM05D001921 ORTHO05D001784 1.7e-13 80.1 155 42.6
Sabra10G0013000 Salix brachista HOM05D001921 ORTHO05D001784 2.2e-13 79.7 198 37.9
Lalb_Chr15g0087151 Lupinus albus HOM05D001921 ORTHO05D001784 2.8e-13 79.3 188 36.2
Medtr2g020830 Medicago truncatula HOM05D001921 ORTHO05D001784 3.7e-13 79.0 192 37.0
Oeu022233.1 Olea europaea HOM05D001921 ORTHO05D001784 3.7e-13 79.0 204 35.3
Oeu032694.1 Olea europaea HOM05D001921 ORTHO05D001784 4.9e-13 78.6 205 35.6
Aqoxy5G00575 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 6.3e-13 78.2 165 35.8
FAN07G0769 Fragaria x ananassa HOM05D001921 ORTHO05D001784 6.3e-13 78.2 182 36.3
Sopen06g019540 Solanum pennellii HOM05D001921 ORTHO05D001784 6.3e-13 78.2 183 38.8
DCAR_027127 Daucus carota HOM05D001921 ORTHO05D001784 8.3e-13 77.8 155 39.4
MBI18_g10965_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 1.1e-12 77.4 190 37.4
ATR0580G129 Amborella trichopoda HOM05D001921 ORTHO05D001784 3.1e-12 75.9 181 38.7
Ca_00585_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.1e-12 75.5 194 35.6
Sabra08G0162400 Salix brachista HOM05D001921 ORTHO05D001784 5.4e-12 75.1 84 56.0
Ciclev10005894m.g Citrus clementina HOM05D001921 ORTHO05D001784 9.2e-12 74.3 210 35.7
Lalb_Chr18g0055871 Lupinus albus HOM05D001921 ORTHO05D001784 9.2e-12 74.3 186 36.0
THA.LOC104820224 Tarenaya hassleriana HOM05D001921 ORTHO05D001784 9.2e-12 74.3 161 39.8
DCAR_030578 Daucus carota HOM05D001921 ORTHO05D001784 1.2e-11 73.9 178 36.5
Potri.008G198000 Populus trichocarpa HOM05D001921 ORTHO05D001784 1.2e-11 73.9 218 33.9
DCAR_002429 Daucus carota HOM05D001921 ORTHO05D001784 1.6e-11 73.6 223 34.1
SGA_v2.0_scaffold89G27578 Striga asiatica HOM05D001921 ORTHO05D001784 1.6e-11 73.6 186 34.9
VMungo1215G1281 Vigna mungo HOM05D001921 ORTHO05D001784 1.6e-11 73.6 161 40.4
Phvul.003G098700 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 2.0e-11 73.2 168 39.3
Aqoxy2G03179 Aquilegia oxysepala HOM05D001921 ORTHO05D001784 4.5e-11 72.0 215 32.1
BcaC09g49094 Brassica carinata HOM05D001921 ORTHO05D001784 5.9e-11 71.6 161 39.8
SGA_v2.0_scaffold142G35647 Striga asiatica HOM05D001921 ORTHO05D001784 5.9e-11 71.6 213 33.8
Cfa017851 Carpinus fangiana HOM05D001921 ORTHO05D001784 7.8e-11 71.2 51 72.5
A01p33350 Brassica napus HOM05D001921 ORTHO05D001784 1.0e-10 70.9 164 39.6
C01p42590 Brassica napus HOM05D001921 ORTHO05D001784 1.0e-10 70.9 164 39.6
BolC1t04216H Brassica oleracea HOM05D001921 ORTHO05D001784 1.0e-10 70.9 164 39.6
BraA01t03453Z Brassica rapa HOM05D001921 ORTHO05D001784 1.0e-10 70.9 164 39.6
CAN.G256.2 Capsicum annuum HOM05D001921 ORTHO05D001784 1.0e-10 70.9 192 34.9
Dinv42904 Davidia involucrata HOM05D001921 ORTHO05D001784 1.3e-10 70.5 179 39.1
Dinv43197 Davidia involucrata HOM05D001921 ORTHO05D001784 1.3e-10 70.5 179 39.1
HPP92_025281 Vanilla planifolia HOM05D001921 ORTHO05D001784 1.3e-10 70.5 177 36.7
AT3G21570 Arabidopsis thaliana HOM05D001921 ORTHO05D001784 1.7e-10 70.1 157 38.9
Lalb_Chr12g0196391 Lupinus albus HOM05D001921 ORTHO05D001784 1.7e-10 70.1 155 38.1
Sopen01g032320 Solanum pennellii HOM05D001921 ORTHO05D001784 2.3e-10 69.7 215 34.4
Solyc01g080500.2 Solanum lycopersicum HOM05D001921 ORTHO05D001784 2.9e-10 69.3 216 34.3
Nitab4.5_0000059g0260 Nicotiana tabacum HOM05D001921 ORTHO05D001784 3.8e-10 68.9 188 37.2
Oeu037657.1 Olea europaea HOM05D001921 ORTHO05D001784 6.6e-10 68.2 209 33.5
Carub.0003s2161 Capsella rubella HOM05D001921 ORTHO05D001784 8.6e-10 67.8 163 39.3
SGA_v2.0_scaffold57G20294 Striga asiatica HOM05D001921 ORTHO05D001784 8.6e-10 67.8 206 33.0
Cfa010136 Carpinus fangiana HOM05D001921 ORTHO05D001784 1.5e-09 67.0 48 75.0
PGSC0003DMG400032113 Solanum tuberosum HOM05D001921 ORTHO05D001784 1.9e-09 66.6 211 33.6
AL3G35680 Arabidopsis lyrata HOM05D001921 ORTHO05D001784 3.3e-09 65.9 158 36.7
CAN.G889.1 Capsicum annuum HOM05D001921 ORTHO05D001784 5.6e-09 65.1 215 32.1
Peaxi162Scf00769g00001 Petunia axillaris HOM05D001921 ORTHO05D001784 5.6e-09 65.1 162 37.7
BcaB04g20578 Brassica carinata HOM05D001921 ORTHO05D001784 7.3e-09 64.7 164 37.8
Migut.G00240 Erythranthe guttata HOM05D001921 ORTHO05D001784 7.3e-09 64.7 207 33.3
Lj4g0019196 Lotus japonicus HOM05D001921 ORTHO05D001784 7.3e-09 64.7 189 33.3
unitig_32.g11745 Utricularia gibba HOM05D001921 ORTHO05D001784 1.6e-08 63.5 178 36.0
Nitab4.5_0003070g0060 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.1e-08 63.2 178 37.6
SalBow2G1161 Salvia bowleyana HOM05D001921 ORTHO05D001784 2.1e-08 63.2 77 54.5
Psat4g028640 Pisum sativum HOM05D001921 ORTHO05D001784 2.8e-08 62.8 159 37.1
TPR.G28126 Trifolium pratense HOM05D001921 ORTHO05D001784 2.8e-08 62.8 166 38.0
Actinidia00069 Actinidia chinensis HOM05D001921 ORTHO05D001784 3.6e-08 62.4 188 33.0
TPR.G18029 Trifolium pratense HOM05D001921 ORTHO05D001784 3.6e-08 62.4 206 32.5
Ca_21561_v3 Cicer arietinum L. HOM05D001921 ORTHO05D001784 4.7e-08 62.0 47 70.2
PSO782G1936 Papaver somniferum HOM05D001921 ORTHO05D001784 6.1e-08 61.6 54 61.1
Psat1g185920 Pisum sativum HOM05D001921 ORTHO05D001784 8.0e-08 61.2 211 31.3
unitig_748.g8567 Utricularia gibba HOM05D001921 ORTHO05D001784 8.0e-08 61.2 175 35.4
CARHR097520 Cardamine hirsuta HOM05D001921 ORTHO05D001784 1.0e-07 60.8 162 38.3
Sp3g19600 Schrenkiella parvula HOM05D001921 ORTHO05D001784 1.0e-07 60.8 161 36.0
CDE11G0807 Ceratophyllum demersum HOM05D001921 ORTHO05D001784 1.8e-07 60.1 170 33.5
Glyma.17G104300 Glycine max HOM05D001921 ORTHO05D001784 1.8e-07 60.1 191 34.0
MD03G1009700 Malus domestica HOM05D001921 ORTHO05D001784 1.8e-07 60.1 87 46.0
Nn2g12262 Nelumbo nucifera HOM05D001921 ORTHO05D001784 1.8e-07 60.1 190 33.2
Aa31LG8G8240 Aethionema arabicum HOM05D001921 ORTHO05D001784 2.3e-07 59.7 158 35.4
MSTRG.3970 Avicennia marina HOM05D001921 ORTHO05D001784 2.3e-07 59.7 204 32.4
Glyma.13G156700 Glycine max HOM05D001921 ORTHO05D001784 2.3e-07 59.7 196 33.2
MBI19_g25275_MAGBIO Magnolia biondii HOM05D001921 ORTHO05D001784 2.3e-07 59.7 163 36.8
Nitab4.5_0002992g0090 Nicotiana tabacum HOM05D001921 ORTHO05D001784 2.3e-07 59.7 116 42.2
Migut.N00134 Erythranthe guttata HOM05D001921 ORTHO05D001784 3.0e-07 59.3 167 33.5
Os01g0384800 Oryza sativa ssp. japonica HOM05D001921 ORTHO05D001784 3.0e-07 59.3 154 34.4
FAN26G0252 Fragaria x ananassa HOM05D001921 ORTHO05D001784 4.0e-07 58.9 201 34.8
Lalb_Chr07g0179601 Lupinus albus HOM05D001921 ORTHO05D001784 4.0e-07 58.9 165 33.3
Medtr4g118490 Medicago truncatula HOM05D001921 ORTHO05D001784 4.0e-07 58.9 97 45.4
Cfa020875 Carpinus fangiana HOM05D001921 ORTHO05D001784 5.2e-07 58.5 185 34.6
Nitab4.5_0009186g0010 Nicotiana tabacum HOM05D001921 ORTHO05D001784 5.2e-07 58.5 115 42.6
VMungo1215G2840 Vigna mungo HOM05D001921 ORTHO05D001784 5.2e-07 58.5 188 34.0
Haze_19306 Corylus avellana HOM05D001921 ORTHO05D001784 6.8e-07 58.2 182 33.5
Phvul.003G175500 Phaseolus vulgaris HOM05D001921 ORTHO05D001784 6.8e-07 58.2 188 33.0
CAN.G1045.40 Capsicum annuum HOM05D001921 ORTHO05D001784 8.9e-07 57.8 182 33.5
QL02p091546 Quercus lobata HOM05D001921 ORTHO05D001784 8.9e-07 57.8 201 32.8
FAN23G0500 Fragaria x ananassa HOM05D001921 ORTHO05D001784 1.2e-06 57.4 200 35.5
Rhsim03G0253600 Rhododendron simsii HOM05D001921 ORTHO05D001784 1.2e-06 57.4 172 34.3
CSS0005509 Camellia sinensis var. sinensis HOM05D001921 ORTHO05D001784 3.4e-06 55.8 174 36.2
Hma1.2p1_0028F.1_g017215 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.4e-06 55.8 104 42.3
Hma1.2p1_2976F.1_g331170 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 3.4e-06 55.8 104 42.3
Actinidia32376 Actinidia chinensis HOM05D001921 ORTHO05D001784 4.4e-06 55.5 177 34.5
Cpa.g.sc46.103 Carica papaya HOM05D001921 ORTHO05D001784 4.4e-06 55.5 112 41.1
Cc03_g02690 Coffea canephora HOM05D001921 ORTHO05D001784 4.4e-06 55.5 246 28.9
Thecc.09G018900 Theobroma cacao HOM05D001921 ORTHO05D001784 4.4e-06 55.5 184 31.5
Atru.chr7.2506 Acer truncatum HOM05D001921 ORTHO05D001784 5.8e-06 55.1 102 43.1
TAR383G0606 Trochodendron aralioides HOM05D001921 ORTHO05D001784 5.8e-06 55.1 190 32.1
Dinv41418 Davidia involucrata HOM05D001921 ORTHO05D001784 7.5e-06 54.7 182 35.2
Hma1.2p1_0228F.1_g096620 Hydrangea macrophylla HOM05D001921 ORTHO05D001784 7.5e-06 54.7 155 35.5
MD02G1012300 Malus domestica HOM05D001921 ORTHO05D001784 7.5e-06 54.7 216 33.3
Manes.16G126400 Manihot esculenta HOM05D001921 ORTHO05D001784 7.5e-06 54.7 183 32.2
Cfa013096 Carpinus fangiana HOM05D001921 ORTHO05D001784 9.8e-06 54.3 167 31.7
Dinv03521 Davidia involucrata HOM05D001921 ORTHO05D001784 9.8e-06 54.3 188 31.4
Eucgr.B01216 Eucalyptus grandis HOM05D001921 ORTHO05D001784 9.8e-06 54.3 110 36.4


User provided reference genes

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