Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.1e-100 369.0 187 100.0
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.0e-65 253.8 215 67.4
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 4.0e-62 241.9 214 64.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 4.4e-61 238.4 214 64.5
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.7e-61 238.0 214 64.5
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 4.8e-60 235.0 217 64.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 4.8e-60 235.0 214 65.0
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.4e-59 233.4 214 64.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.8e-59 233.0 213 65.3
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 4.1e-59 231.9 214 63.6
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 7.0e-59 231.1 213 62.9
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 9.1e-59 230.7 214 63.1
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 3.5e-58 228.8 214 62.1
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 3.5e-58 228.8 214 63.1
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.0e-57 227.3 213 63.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.0e-57 227.3 213 62.9
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.9e-57 225.7 218 62.4
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 3.8e-57 225.3 212 61.8
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.8e-57 225.3 217 62.2
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 6.5e-57 224.6 215 62.3
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 6.5e-57 224.6 212 61.8
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.1e-56 223.8 216 60.6
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 4.2e-56 221.9 214 61.2
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 7.2e-56 221.1 215 61.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.6e-55 219.9 214 60.7
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 2.7e-55 219.2 214 61.7
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.6e-55 218.8 213 60.6
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 3.6e-55 218.8 212 62.3
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 4.7e-55 218.4 214 62.6
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.7e-55 218.4 213 60.6
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 4.7e-55 218.4 215 60.9
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.1e-55 218.0 213 61.0
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.1e-55 218.0 215 62.3
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.0e-54 217.2 214 60.7
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.0e-54 217.2 215 61.4
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 3.0e-54 215.7 213 59.6
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 8.8e-54 214.2 224 60.7
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 8.8e-54 214.2 213 61.0
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 8.8e-54 214.2 215 60.5
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.5e-53 213.4 217 59.9
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.0e-53 213.0 214 61.7
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.0e-53 213.0 214 60.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.6e-53 212.6 212 61.3
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.6e-53 212.6 216 61.1
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 5.7e-53 211.5 214 60.7
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.7e-52 209.9 213 61.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.7e-52 209.9 219 61.2
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.7e-52 209.9 214 58.4
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.2e-52 209.5 216 60.6
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 2.8e-52 209.1 219 60.7
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.8e-52 209.1 213 59.2
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.8e-52 209.1 212 59.9
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.8e-52 209.1 213 60.6
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.8e-52 209.1 215 60.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 3.7e-52 208.8 226 58.4
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.7e-52 208.8 204 61.8
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.7e-52 208.8 204 61.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.8e-52 208.4 205 62.0
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.8e-52 208.4 205 62.0
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.8e-52 208.4 216 59.7
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.8e-52 208.4 215 59.5
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 4.8e-52 208.4 215 59.1
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 6.3e-52 208.0 214 57.9
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 8.3e-52 207.6 215 60.5
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.1e-51 207.2 215 58.6
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.1e-51 207.2 218 60.6
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.1e-51 207.2 218 59.2
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.1e-51 207.2 215 58.6
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.4e-51 206.8 216 58.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.4e-51 206.8 216 58.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 2.4e-51 206.1 213 58.7
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 2.4e-51 206.1 216 59.7
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.4e-51 206.1 214 59.8
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.4e-51 206.1 212 59.4
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-51 205.7 217 58.5
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.1e-51 205.7 217 58.5
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 3.1e-51 205.7 216 58.8
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.1e-51 205.3 215 58.6
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.1e-51 205.3 213 57.7
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 5.4e-51 204.9 214 58.9
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 7.0e-51 204.5 218 59.2
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 7.0e-51 204.5 215 58.6
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 7.0e-51 204.5 217 58.5
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.6e-50 203.4 216 59.3
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.6e-50 203.4 212 59.9
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 2.0e-50 203.0 226 58.4
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 2.7e-50 202.6 217 58.1
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.5e-50 202.2 213 58.2
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.5e-50 202.2 215 57.2
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.5e-50 201.8 214 57.0
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 4.5e-50 201.8 213 59.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 5.9e-50 201.4 195 62.1
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.9e-50 201.4 214 57.5
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 7.7e-50 201.1 212 57.5
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.0e-49 200.7 215 57.7
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.3e-49 200.3 214 57.5
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.3e-49 200.3 215 56.3
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 1.7e-49 199.9 215 57.7
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.7e-49 199.9 215 57.2
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 2.2e-49 199.5 214 57.5
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.9e-49 199.1 200 57.5
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 2.9e-49 199.1 213 57.7
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 8.5e-49 197.6 217 56.7
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.2e-48 195.7 213 57.3
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 3.2e-48 195.7 216 56.5
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 3.2e-48 195.7 213 55.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.5e-48 194.9 212 55.7
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 7.2e-48 194.5 214 55.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 7.2e-48 194.5 214 56.5
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 9.4e-48 194.1 212 56.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.2e-47 193.7 204 59.8
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 1.2e-47 193.7 204 59.8
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.2e-47 193.7 216 56.0
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.7e-47 192.6 213 55.9
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 4.7e-47 191.8 213 55.9
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.0e-46 190.7 214 56.5
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-46 190.3 189 59.3
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-46 190.3 212 56.1
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 2.3e-46 189.5 218 54.1
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.0e-46 189.1 215 54.9
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 5.2e-46 188.3 213 54.0
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 6.8e-46 188.0 218 54.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 7.5e-45 184.5 185 59.5
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.2e-44 183.0 212 56.1
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 6.3e-44 181.4 217 53.5
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.4e-43 180.3 204 55.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 7.0e-43 177.9 213 53.5
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 2.7e-42 176.0 191 56.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.7e-41 173.3 186 58.6
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.5e-40 170.2 213 54.5
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.6e-40 168.3 202 53.0
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 7.2e-40 167.9 217 53.0
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.8e-38 163.3 213 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 3.4e-37 159.1 164 54.9
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 3.4e-37 159.1 146 59.6
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 5.7e-37 158.3 147 60.5
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.9e-36 156.0 162 56.2
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.9e-36 155.2 164 53.7
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.3e-36 154.5 207 46.4
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.4e-35 153.7 169 54.4
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.8e-35 153.3 163 54.6
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 2.4e-35 152.9 153 58.2
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.2e-34 150.6 207 49.3
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.5e-32 142.9 203 50.7
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.8e-30 136.7 143 54.5
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.2e-29 134.0 128 57.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 5.8e-29 131.7 200 48.0
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 7.5e-29 131.3 207 43.0
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 5.4e-27 125.2 171 46.2
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.3e-25 120.6 91 71.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.1e-14 84.3 49 83.7
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.8e-07 59.7 100 49.0
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 3.6e-07 59.3 100 48.0
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 6.8e-06 55.1 100 48.0


User provided reference genes

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