Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 4.6e-71 271.2 143 100.0
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.4e-59 233.0 135 89.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.8e-59 232.6 141 85.8
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.4e-59 232.3 145 83.4
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 3.1e-59 231.9 143 83.9
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 7.0e-59 230.7 144 84.0
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 7.0e-59 230.7 144 83.3
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 7.0e-59 230.7 144 84.0
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 1.2e-58 229.9 146 84.2
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 1.6e-58 229.6 141 83.7
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 2.0e-58 229.2 135 87.4
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.6e-58 228.8 141 84.4
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.5e-58 228.4 145 83.4
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 3.5e-58 228.4 143 82.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.5e-58 228.4 145 81.4
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 4.5e-58 228.0 141 83.0
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 5.9e-58 227.6 141 82.3
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 7.7e-58 227.3 135 83.7
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 7.7e-58 227.3 135 83.7
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 1.0e-57 226.9 135 88.1
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.3e-57 226.5 145 80.0
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.7e-57 226.1 135 87.4
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.7e-57 226.1 141 83.0
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 1.7e-57 226.1 143 83.2
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.2e-57 225.7 144 82.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-57 225.7 145 82.1
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-57 225.7 145 82.1
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 2.2e-57 225.7 145 82.1
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.2e-57 225.7 134 86.6
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.2e-57 225.7 134 86.6
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.2e-57 225.7 135 87.4
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 2.2e-57 225.7 143 81.8
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 3.8e-57 224.9 134 85.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 3.8e-57 224.9 135 87.4
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 3.8e-57 224.9 143 81.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 3.8e-57 224.9 135 83.7
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 3.8e-57 224.9 144 80.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 3.8e-57 224.9 141 82.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.0e-57 224.6 143 81.8
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.0e-57 224.6 143 81.8
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 8.5e-57 223.8 145 81.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-56 223.4 142 81.7
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.1e-56 223.4 134 85.1
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.5e-56 223.0 135 85.2
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.5e-56 223.0 135 85.2
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.5e-56 223.0 134 84.3
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.9e-56 222.6 145 80.7
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.9e-56 222.6 141 83.0
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.9e-56 222.6 134 83.6
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 3.2e-56 221.9 134 84.3
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 4.2e-56 221.5 135 84.4
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.2e-56 221.5 134 83.6
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 5.5e-56 221.1 134 83.6
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 5.5e-56 221.1 141 80.1
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 5.5e-56 221.1 141 80.1
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 9.4e-56 220.3 137 84.7
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 1.2e-55 219.9 144 81.2
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.2e-55 219.9 134 82.1
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.2e-55 219.9 135 80.7
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.2e-55 219.9 141 79.4
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.1e-55 219.2 134 84.3
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.7e-55 218.8 139 82.7
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 2.7e-55 218.8 144 79.2
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 3.6e-55 218.4 141 82.3
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 3.6e-55 218.4 144 79.2
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 3.6e-55 218.4 142 78.9
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 4.7e-55 218.0 134 80.6
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 6.1e-55 217.6 141 80.1
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 6.1e-55 217.6 134 82.1
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 6.1e-55 217.6 145 81.4
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 6.1e-55 217.6 144 78.5
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 8.0e-55 217.2 141 82.3
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.4e-54 216.5 143 78.3
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.4e-54 216.5 144 77.1
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.4e-54 216.5 134 81.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.8e-54 216.1 141 78.7
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.8e-54 216.1 141 78.7
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.8e-54 216.1 141 78.0
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 1.8e-54 216.1 143 77.6
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.8e-54 216.1 141 78.7
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.8e-54 216.1 134 81.3
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.3e-54 215.7 141 81.6
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.3e-54 215.7 143 77.6
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.0e-54 215.3 144 77.8
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 4.0e-54 214.9 135 80.0
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 5.2e-54 214.5 134 81.3
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.2e-54 214.5 134 82.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 5.2e-54 214.5 141 76.6
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.2e-54 214.5 135 79.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 6.7e-54 214.2 141 78.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 8.8e-54 213.8 135 79.3
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.2e-53 213.4 134 81.3
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.5e-53 213.0 145 74.5
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.5e-53 213.0 134 79.9
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.0e-53 212.6 134 79.9
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 3.3e-53 211.8 132 81.1
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 4.8e-52 208.0 134 78.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 8.2e-52 207.2 144 72.2
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.4e-51 206.5 134 79.9
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 3.1e-51 205.3 144 70.8
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 2.0e-50 202.6 140 75.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 7.7e-50 200.7 135 74.8
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.2e-49 199.1 135 73.3
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 3.8e-49 198.4 120 85.8
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.5e-48 195.7 135 72.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 5.5e-48 194.5 145 69.0
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 1.8e-46 189.5 135 71.9
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 2.3e-46 189.1 135 73.3
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 5.2e-46 188.0 117 80.3
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.2e-45 186.8 134 67.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.4e-45 185.3 137 71.5
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 4.4e-45 184.9 135 69.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 4.4e-45 184.9 138 71.0
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 4.4e-45 184.9 136 72.1
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.8e-45 183.7 135 68.9
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-44 183.3 136 69.1
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 136 69.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-44 183.3 136 71.3
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-44 183.3 136 69.1
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.7e-44 183.0 134 68.7
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 2.2e-44 182.6 120 80.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 2.8e-44 182.2 136 67.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 3.7e-44 181.8 135 67.4
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 8.3e-44 180.6 135 69.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 8.3e-44 180.6 133 68.4
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 3.5e-42 175.3 144 66.0
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 4.5e-42 174.9 137 66.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 7.7e-42 174.1 135 69.6
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.3e-41 172.6 142 61.3
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.3e-41 172.6 135 68.9
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 3.8e-41 171.8 136 66.9
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 3.8e-41 171.8 136 66.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 3.6e-39 165.2 148 59.5
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 2.3e-38 162.5 135 63.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.2e-38 161.4 134 62.7
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 5.4e-35 151.4 132 59.8
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.5e-32 142.5 130 59.2
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 4.3e-32 141.7 111 61.3
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 8.9e-30 134.0 131 58.0
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.6e-24 114.8 104 59.6
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 6.2e-23 111.3 80 71.2
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 8.0e-23 110.9 134 40.3
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.4e-21 105.1 95 60.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 9.2e-19 97.4 138 39.1
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 8.9e-14 80.9 87 47.1
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 7.5e-13 77.8 47 74.5


User provided reference genes

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