Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03451 Eucalyptus grandis HOM05D007633 ORTHO05D008817 1.5e-150 536.2 275 100.0
Cfa015662 Carpinus fangiana HOM05D007633 ORTHO05D008817 1.7e-53 213.8 279 44.8
Haze_00885 Corylus avellana HOM05D007633 ORTHO05D008817 8.4e-53 211.5 270 45.2
CSS0018565 Camellia sinensis var. sinensis HOM05D007633 ORTHO05D008817 1.6e-51 207.2 271 45.0
PGR004G0463 Punica granatum HOM05D007633 ORTHO05D008817 6.0e-51 205.3 251 45.4
Potri.008G154200 Populus trichocarpa HOM05D007633 ORTHO05D008817 3.0e-50 203.0 274 42.3
Atru.chr4.2449 Acer truncatum HOM05D007633 ORTHO05D008817 3.9e-50 202.6 273 43.2
CsaV3_3G013230 Cucumis sativus L. HOM05D007633 ORTHO05D008817 3.9e-50 202.6 265 46.0
Ciclev10005651m.g Citrus clementina HOM05D007633 ORTHO05D008817 2.5e-49 199.9 273 44.7
QL06p002095 Quercus lobata HOM05D007633 ORTHO05D008817 3.3e-49 199.5 246 44.7
Thecc.04G233700 Theobroma cacao HOM05D007633 ORTHO05D008817 4.3e-49 199.1 275 42.2
MELO3C006526.2 Cucumis melo HOM05D007633 ORTHO05D008817 5.6e-49 198.7 265 44.5
FAN02G3335 Fragaria x ananassa HOM05D007633 ORTHO05D008817 7.4e-49 198.4 269 41.3
Potri.010G086300 Populus trichocarpa HOM05D007633 ORTHO05D008817 7.4e-49 198.4 274 42.7
RcHm_v2.0_Chr4g0415951 Rosa chinensis HOM05D007633 ORTHO05D008817 1.3e-48 197.6 269 41.3
Gohir.A09G053600 Gossypium hirsutum HOM05D007633 ORTHO05D008817 2.1e-48 196.8 271 42.8
FAN22G0362 Fragaria x ananassa HOM05D007633 ORTHO05D008817 3.7e-48 196.1 269 41.3
Nn1g02349 Nelumbo nucifera HOM05D007633 ORTHO05D008817 4.0e-47 192.6 271 40.6
Glyma.11G006100 Glycine max HOM05D007633 ORTHO05D008817 6.9e-47 191.8 266 42.5
Gohir.D09G053050 Gossypium hirsutum HOM05D007633 ORTHO05D008817 2.0e-46 190.3 271 43.2
TAR636G0739 Trochodendron aralioides HOM05D007633 ORTHO05D008817 2.0e-46 190.3 271 40.2
Sabra10G0057400 Salix brachista HOM05D007633 ORTHO05D008817 2.6e-46 189.9 274 41.6
Gorai.006G055000 Gossypium raimondii HOM05D007633 ORTHO05D008817 4.5e-46 189.1 277 42.2
Psat4g209480 Pisum sativum HOM05D007633 ORTHO05D008817 4.5e-46 189.1 286 39.2
FvH4_4g16290 Fragaria vesca HOM05D007633 ORTHO05D008817 1.0e-45 188.0 262 40.8
FAN12G0707 Fragaria x ananassa HOM05D007633 ORTHO05D008817 1.0e-45 188.0 262 40.8
Hma1.2p1_0745F.1_g212150 Hydrangea macrophylla HOM05D007633 ORTHO05D008817 1.0e-45 188.0 271 40.2
GSVIVG01017995001 Vitis vinifera HOM05D007633 ORTHO05D008817 1.7e-45 187.2 269 41.6
Dinv14003 Davidia involucrata HOM05D007633 ORTHO05D008817 6.5e-45 185.3 246 42.3
Sed0010969 Sechium edule HOM05D007633 ORTHO05D008817 2.5e-44 183.3 244 45.5
CANSAT78G1135 Cannabis sativa HOM05D007633 ORTHO05D008817 3.2e-44 183.0 275 41.1
LjContig00408g0001251 Lotus japonicus HOM05D007633 ORTHO05D008817 7.1e-44 181.8 269 40.9
Manes.03G177200 Manihot esculenta HOM05D007633 ORTHO05D008817 3.5e-43 179.5 265 40.0
Oeu011618.1 Olea europaea HOM05D007633 ORTHO05D008817 1.0e-42 177.9 246 39.0
Prupe.1G015500 Prunus persica HOM05D007633 ORTHO05D008817 3.0e-42 176.4 163 52.8
Rhsim02G0025900 Rhododendron simsii HOM05D007633 ORTHO05D008817 3.0e-42 176.4 245 42.0
MD16G1195500 Malus domestica HOM05D007633 ORTHO05D008817 1.1e-41 174.5 260 40.4
Ca_24403_v3 Cicer arietinum L. HOM05D007633 ORTHO05D008817 1.9e-41 173.7 249 43.8
TWI73G0352 Tripterygium wilfordii HOM05D007633 ORTHO05D008817 9.6e-41 171.4 266 40.6
TPR.G38043 Trifolium pratense HOM05D007633 ORTHO05D008817 3.7e-40 169.5 261 40.6
Medtr5g006410 Medicago truncatula HOM05D007633 ORTHO05D008817 1.1e-39 167.9 260 40.4
Aqoxy2G03409 Aquilegia oxysepala HOM05D007633 ORTHO05D008817 5.3e-39 165.6 260 39.2
Actinidia36954 Actinidia chinensis HOM05D007633 ORTHO05D008817 3.4e-38 162.9 270 37.0
Sc19g0004060 Simmondsia chinensis HOM05D005574 ORTHO05D007102 3.4e-38 162.9 273 39.6
Nitab4.5_0008118g0020 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.2e-36 156.4 268 34.3
MSTRG.21860 Avicennia marina HOM05D007633 ORTHO05D008817 5.5e-36 155.6 249 38.2
Glyma.01G237200 Glycine max HOM05D007633 ORTHO05D008817 7.2e-36 155.2 270 37.8
Duzib212G0599 Durio zibethinus HOM05D007633 ORTHO05D008817 9.3e-36 154.8 183 49.2
Nitab4.5_0001342g0010 Nicotiana tabacum HOM05D007633 ORTHO05D008817 2.7e-35 153.3 263 35.7
CiPaw.01G167500 Carya illinoinensis HOM05D007633 ORTHO05D008817 6.1e-35 152.1 274 37.2
Phvul.002G044600 Phaseolus vulgaris HOM05D007633 ORTHO05D008817 1.0e-34 151.4 276 36.2
HanXRQChr02g0035611 Helianthus annuus HOM05D007633 ORTHO05D008817 1.3e-34 151.0 252 35.7
Sopen09g031040 Solanum pennellii HOM05D007633 ORTHO05D008817 1.8e-34 150.6 248 34.7
Solyc09g082160.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 2.3e-34 150.2 248 34.7
PGSC0003DMG400032254 Solanum tuberosum HOM05D007633 ORTHO05D008817 2.5e-33 146.7 248 34.7
FAN07G1430 Fragaria x ananassa HOM05D007633 ORTHO05D008817 3.3e-33 146.4 204 41.7
Sopen06g019290 Solanum pennellii HOM05D007633 ORTHO05D008817 1.6e-32 144.1 158 43.7
Peaxi162Scf00092g00615 Petunia axillaris HOM05D007633 ORTHO05D008817 1.1e-31 141.4 260 34.2
Cc03_g03920 Coffea canephora HOM05D007633 ORTHO05D008817 3.1e-31 139.8 277 35.4
Lalb_Chr01g0013131 Lupinus albus HOM05D007633 ORTHO05D008817 1.5e-30 137.5 273 35.5
Peaxi162Scf00192g01119 Petunia axillaris HOM05D007633 ORTHO05D008817 1.5e-30 137.5 270 33.7
vmacro15349 Vaccinium macrocarpon HOM05D007633 ORTHO05D008817 2.2e-29 133.7 249 34.1
Solyc06g054140.4 Solanum lycopersicum HOM05D007633 ORTHO05D008817 1.1e-28 131.3 158 41.1
ATR0697G107 Amborella trichopoda HOM05D007633 ORTHO05D008817 5.5e-28 129.0 274 32.5
Ah.04g154590 Amaranthus hybridus HOM05D007633 ORTHO05D008817 1.2e-27 127.9 266 34.2
VMungo1215G1793 Vigna mungo HOM05D007633 ORTHO05D008817 2.1e-27 127.1 283 35.3
Hund12119 Selenicereus undatus HOM05D007633 ORTHO05D008817 2.7e-27 126.7 241 32.0
Migut.N00191 Erythranthe guttata HOM05D007633 ORTHO05D008817 6.1e-27 125.6 198 37.9
ClCG05G005110 Citrullus lanatus HOM05D007633 ORTHO05D008817 7.9e-27 125.2 284 35.9
Lsat_1_v5_gn_7_64401 Lactuca sativa HOM05D007633 ORTHO05D008817 1.0e-26 124.8 252 33.3
HPP92_006116 Vanilla planifolia HOM05D007633 ORTHO05D008817 1.0e-26 124.8 271 34.7
ECA240G3784 Erigeron canadensis HOM05D000137 ORTHO05D000452 2.5e-25 120.2 240 32.5
Nitab4.5_0000321g0150 Nicotiana tabacum HOM05D007633 ORTHO05D008817 3.3e-25 119.8 186 35.5
Nitab4.5_0001920g0040 Nicotiana tabacum HOM05D007633 ORTHO05D008817 7.4e-25 118.6 225 32.4
CDE07G1037 Ceratophyllum demersum HOM05D007633 ORTHO05D008817 6.3e-24 115.5 146 41.8
PSO761G0330 Papaver somniferum HOM05D007633 ORTHO05D008817 1.7e-21 107.5 259 30.9
PSO210G0191 Papaver somniferum HOM05D007633 ORTHO05D008817 2.2e-21 107.1 267 30.0
THA.LOC104826165 Tarenaya hassleriana HOM05D012198 ORTHO05D008817 2.9e-21 106.7 276 29.7
PSO761G0485 Papaver somniferum HOM05D007633 ORTHO05D008817 3.8e-21 106.3 262 27.9
PSO210G6592 Papaver somniferum HOM05D007633 ORTHO05D008817 2.5e-20 103.6 262 28.2
Aa31LG1G19200 Aethionema arabicum HOM05D005574 ORTHO05D007102 3.2e-20 103.2 282 28.0
SalBow3G0862 Salvia bowleyana HOM05D007633 ORTHO05D008817 4.2e-20 102.8 270 31.1
Lsat_1_v5_gn_8_155361 Lactuca sativa HOM05D007633 ORTHO05D008817 9.4e-20 101.7 113 44.2
AUR62034710 Chenopodium quinoa HOM05D007633 ORTHO05D008817 1.4e-18 97.8 147 38.1
Sp1g04300 Schrenkiella parvula HOM05D012198 ORTHO05D008817 5.7e-17 92.4 277 28.5
Carub.0001s0476 Capsella rubella HOM05D012198 ORTHO05D008817 7.4e-17 92.0 279 29.7
Thhalv10008449m.g Eutrema salsugineum HOM05D012198 ORTHO05D008817 1.3e-16 91.3 280 27.5
MD13G1194600 Malus domestica HOM05D007633 ORTHO05D008817 4.8e-16 89.4 154 37.0
VMungo1215G1192 Vigna mungo HOM05D007633 ORTHO05D008817 8.2e-16 88.6 284 29.6
arahy.Tifrunner.gnm1.ann1.VQRK5I Arachis hypogaea HOM05D007633 ORTHO05D008817 1.1e-15 88.2 188 33.0
PGSC0003DMG400016306 Solanum tuberosum HOM05D007633 ORTHO05D008817 1.1e-15 88.2 103 45.6
arahy.Tifrunner.gnm1.ann1.5LNY8Z Arachis hypogaea HOM05D007633 ORTHO05D008817 1.4e-15 87.8 190 33.7
BcaB02g06861 Brassica carinata HOM05D012198 ORTHO05D008817 1.8e-15 87.4 224 29.0
AUR62043551 Chenopodium quinoa HOM05D007633 ORTHO05D008817 2.4e-15 87.0 208 30.8
C05p03770 Brassica napus HOM05D012198 ORTHO05D008817 5.3e-15 85.9 224 26.8
BolC5t29154H Brassica oleracea HOM05D012198 ORTHO05D008817 5.3e-15 85.9 224 26.8
AT1G05430 Arabidopsis thaliana HOM05D012198 ORTHO05D008817 1.2e-14 84.7 280 28.6
CARHR205340 Cardamine hirsuta HOM05D012198 ORTHO05D008817 1.6e-14 84.3 285 28.1
BcaC05g24387 Brassica carinata HOM05D012198 ORTHO05D008817 2.0e-14 84.0 224 26.8
AL1G15270 Arabidopsis lyrata HOM05D012198 ORTHO05D008817 5.9e-14 82.4 280 27.5
A10p04130 Brassica napus HOM05D012198 ORTHO05D008817 1.7e-13 80.9 224 25.9
BraA10t42683Z Brassica rapa HOM05D012198 ORTHO05D008817 1.7e-13 80.9 224 25.9
SEGI_17234 Sequoiadendron giganteum HOM05D007633 ORTHO05D008817 2.2e-13 80.5 82 42.7
EL10Ac3g06495 Beta vulgaris HOM05D007633 ORTHO05D008817 1.9e-12 77.4 266 27.8
BcaC05g24389 Brassica carinata HOM05D012198 ORTHO05D008817 1.0e-10 71.6 126 32.5
Os10g0430800 Oryza sativa ssp. japonica HOM05D026697 ORTHO05D008817 1.8e-07 60.8 265 24.5
Cpa.g.sc58.92 Carica papaya HOM05D000003 ORTHO05D000004 5.3e-07 59.3 52 57.7
MD07G1251800 Malus domestica HOM05D007633 ORTHO05D008817 7.7e-06 55.5 53 50.9


User provided reference genes

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