Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 2.9e-65 251.9 144 100.0
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 4.4e-21 105.1 99 54.5
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 1.9e-19 99.8 94 57.4
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 5.4e-19 98.2 128 46.9
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 1.2e-18 97.1 95 52.6
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 3.5e-18 95.5 134 42.5
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 1.7e-17 93.2 97 49.5
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 8.7e-17 90.9 133 43.6
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 8.7e-17 90.9 103 50.5
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 8.7e-17 90.9 95 49.5
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 8.7e-17 90.9 96 46.9
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 1.1e-16 90.5 95 49.5
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 2.5e-16 89.4 98 50.0
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 3.3e-16 89.0 99 47.5
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 4.3e-16 88.6 138 42.8
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 7.3e-16 87.8 102 48.0
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 1.3e-15 87.0 103 45.6
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.3e-15 87.0 101 48.5
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 1.6e-15 86.7 102 46.1
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 1.6e-15 86.7 101 48.5
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 2.8e-15 85.9 99 43.4
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 2.8e-15 85.9 96 49.0
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 3.6e-15 85.5 101 47.5
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 3.6e-15 85.5 97 47.4
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 3.6e-15 85.5 121 42.1
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 4.8e-15 85.1 94 44.7
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 4.8e-15 85.1 134 39.6
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 6.2e-15 84.7 139 41.0
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 6.2e-15 84.7 101 43.6
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 6.2e-15 84.7 95 45.3
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.2e-15 84.7 101 47.5
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 1.1e-14 84.0 94 44.7
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 2.4e-14 82.8 107 43.0
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 2.4e-14 82.8 96 45.8
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 3.1e-14 82.4 136 37.5
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 3.1e-14 82.4 134 37.3
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 3.1e-14 82.4 136 37.5
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 3.1e-14 82.4 98 44.9
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 4.0e-14 82.0 95 47.4
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 4.0e-14 82.0 117 40.2
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 5.3e-14 81.6 103 40.8
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 5.3e-14 81.6 101 42.6
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 6.9e-14 81.3 136 38.2
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 6.9e-14 81.3 136 38.2
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 6.9e-14 81.3 103 40.8
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 6.9e-14 81.3 98 44.9
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 9.0e-14 80.9 98 43.9
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 9.0e-14 80.9 94 42.6
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 1.2e-13 80.5 111 40.5
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.2e-13 80.5 98 45.9
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.2e-13 80.5 128 38.3
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 1.2e-13 80.5 100 46.0
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 1.5e-13 80.1 76 53.9
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.5e-13 80.1 122 38.5
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 1.5e-13 80.1 94 44.7
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 2.0e-13 79.7 132 36.4
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 2.0e-13 79.7 111 43.2
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 2.0e-13 79.7 75 56.0
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 2.6e-13 79.3 79 53.2
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 2.6e-13 79.3 103 38.8
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 2.6e-13 79.3 103 38.8
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 2.6e-13 79.3 95 43.2
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 3.4e-13 79.0 131 38.2
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 3.4e-13 79.0 131 38.2
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 4.5e-13 78.6 74 52.7
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 5.8e-13 78.2 134 35.1
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 5.8e-13 78.2 76 53.9
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 7.6e-13 77.8 75 57.3
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 7.6e-13 77.8 131 37.4
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 7.6e-13 77.8 94 44.7
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 7.6e-13 77.8 94 43.6
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 1.3e-12 77.0 135 34.1
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 1.3e-12 77.0 112 46.4
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.3e-12 77.0 136 34.6
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 1.7e-12 76.6 136 37.5
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 2.2e-12 76.3 76 52.6
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 2.9e-12 75.9 95 38.9
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 4.9e-12 75.1 95 38.9
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 6.4e-12 74.7 72 45.8
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 8.4e-12 74.3 96 38.5
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 1.1e-11 73.9 95 44.2
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 1.4e-11 73.6 141 35.5
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 1.9e-11 73.2 107 42.1
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 3.2e-11 72.4 102 35.3
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 4.2e-11 72.0 72 47.2
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 4.2e-11 72.0 131 35.9
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 1.6e-10 70.1 108 38.9
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 2.7e-10 69.3 98 40.8
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 2.7e-10 69.3 96 44.8
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 3.5e-10 68.9 106 44.3
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 1.0e-09 67.4 108 38.9
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 3.9e-09 65.5 76 47.4
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 8.7e-09 64.3 75 52.0
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 1.3e-07 60.5 83 50.6
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 2.1e-07 59.7 85 44.7
SEGI_16230 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 1.4e-06 57.0 78 42.3
SEGI_32233 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 1.4e-06 57.0 78 42.3
SEGI_37893 Sequoiadendron giganteum HOM05D000489 ORTHO05D000372 1.4e-06 57.0 76 40.8
TAR633G0575 Trochodendron aralioides HOM05D007411 ORTHO05D009025 1.8e-06 56.6 81 42.0
Zm00001eb408970 Zea mays HOM05D032292 ORTHO05D009025 6.9e-06 54.7 85 38.8


User provided reference genes

Program Settings