Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 0.0e+00 1144.0 579 100.0
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 3.2e-264 914.8 580 80.3
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 1.5e-253 879.4 575 78.3
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 8.0e-247 857.1 582 76.3
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.0e-245 852.4 581 76.1
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.7e-244 849.4 581 75.7
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 2.3e-241 839.0 579 75.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 3.0e-241 838.6 582 75.3
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 3.9e-241 838.2 578 74.9
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 5.0e-241 837.8 571 77.1
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 6.6e-241 837.4 549 78.5
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 1.1e-240 836.6 609 72.2
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 4.3e-240 834.7 570 75.6
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.2e-239 830.9 579 74.4
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 4.0e-238 828.2 583 74.8
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 7.5e-237 823.9 581 75.4
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 9.8e-237 823.5 581 74.4
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 1.3e-236 823.2 551 76.0
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 2.9e-236 822.0 576 73.8
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 3.7e-236 821.6 569 75.0
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 4.9e-236 821.2 580 74.5
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 3.2e-235 818.5 578 73.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.8e-234 813.9 583 72.7
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 1.0e-233 813.5 549 76.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-233 812.8 580 72.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 3.0e-233 812.0 533 79.0
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-232 810.1 583 72.4
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 1.5e-232 809.7 548 74.5
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 2.1e-231 805.8 570 73.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 2.8e-231 805.4 581 72.3
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.7e-231 804.7 583 70.5
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.2e-231 804.3 581 72.5
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.4e-230 803.1 583 71.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.8e-230 802.7 580 71.7
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 3.1e-230 802.0 570 73.2
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 4.0e-230 801.6 558 75.3
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 6.8e-230 800.8 579 71.8
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.0e-229 799.3 583 71.9
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.6e-229 798.9 549 74.5
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 7.6e-229 797.3 548 73.0
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 7.6e-229 797.3 549 73.8
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 9.9e-229 797.0 579 70.8
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 9.9e-229 797.0 580 70.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 1.3e-228 796.6 571 73.0
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.9e-228 794.7 581 71.6
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.9e-228 794.7 580 71.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 8.3e-228 793.9 581 71.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 1.1e-227 793.5 548 72.3
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 1.4e-227 793.1 549 75.0
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 3.2e-227 792.0 549 73.2
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.4e-227 791.2 549 73.2
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 7.1e-227 790.8 597 71.2
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 9.2e-227 790.4 579 70.1
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 9.2e-227 790.4 549 72.9
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.6e-226 789.6 580 71.0
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.6e-226 789.6 548 74.6
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 1.7e-225 786.2 580 69.7
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 2.3e-225 785.8 566 71.2
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 2.3e-225 785.8 579 69.9
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 8.6e-225 783.9 563 73.0
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 1.1e-224 783.5 571 70.4
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 1.5e-224 783.1 578 70.4
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 2.5e-224 782.3 560 73.8
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 5.6e-224 781.2 579 69.8
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.2e-223 780.0 572 69.9
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.6e-223 778.5 578 69.4
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 4.7e-223 778.1 573 69.5
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 4.7e-223 778.1 578 69.4
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 5.8e-221 771.2 590 67.8
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 1.7e-220 769.6 514 77.4
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 4.9e-220 768.1 549 71.9
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 6.4e-220 767.7 579 68.4
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 2.4e-219 765.8 548 71.4
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 5.4e-219 764.6 549 71.4
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 9.3e-219 763.8 585 68.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 9.3e-219 763.8 562 70.5
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 2.7e-218 762.3 585 68.0
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.5e-218 761.9 585 68.0
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 3.5e-218 761.9 546 71.4
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 3.5e-218 761.9 569 69.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.0e-217 760.4 585 68.2
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 3.0e-217 758.8 585 68.2
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 3.9e-217 758.4 569 69.8
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 8.7e-217 757.3 576 66.8
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 8.7e-217 757.3 505 77.6
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 8.7e-217 757.3 530 73.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 3.3e-216 755.4 577 69.8
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.8e-215 751.5 551 70.6
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 6.2e-215 751.1 589 67.6
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.2e-213 746.9 555 68.8
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 3.4e-213 745.3 597 66.0
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.4e-213 745.0 574 68.6
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.3e-212 743.4 601 65.9
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 3.8e-212 741.9 584 68.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 4.9e-212 741.5 551 69.9
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 1.9e-211 739.6 583 66.0
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 4.2e-211 738.4 548 70.3
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 9.3e-211 737.3 579 66.8
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.7e-209 733.0 579 65.8
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 3.9e-209 731.9 583 67.1
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 1.5e-208 729.9 565 67.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 1.1e-206 723.8 549 68.1
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.0e-206 721.8 581 63.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.0e-206 721.8 549 67.9
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.0e-206 720.7 549 69.8
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 9.9e-205 717.2 586 65.5
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 9.9e-205 717.2 563 67.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 9.9e-205 717.2 564 66.3
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-203 713.4 581 65.7
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 5.4e-203 711.4 577 64.6
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 2.7e-202 709.1 578 65.1
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-200 703.7 563 66.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 1.3e-199 700.3 578 64.5
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 2.1e-199 699.5 577 62.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.8e-191 672.5 601 61.2
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.8e-191 672.5 524 67.6
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.2e-189 667.2 551 64.1
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 1.7e-188 663.3 579 62.5
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 3.2e-187 659.1 490 68.8
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 7.2e-187 657.9 559 64.4
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 1.6e-183 646.7 549 62.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 5.3e-182 641.7 581 60.8
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 7.4e-176 621.3 583 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 2.2e-175 619.8 549 59.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.1e-174 617.5 462 71.4
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 5.1e-169 598.6 465 70.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.4e-161 573.9 573 57.1
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 4.8e-159 565.5 554 55.2
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 2.7e-146 523.1 555 51.2
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 1.8e-145 520.4 581 52.2
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 5.4e-142 508.8 369 70.5
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 4.5e-141 505.8 347 73.5
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.6e-125 454.1 709 41.3
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 8.6e-124 448.4 438 58.0
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-108 398.3 258 77.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.1e-105 388.3 258 76.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 1.4e-73 281.6 528 36.9
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 5.1e-60 236.5 549 35.3
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.8e-49 201.4 150 68.7
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.2e-48 198.7 184 57.1
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.5e-46 191.0 217 52.1
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 9.1e-41 172.6 122 71.3
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 2.0e-40 171.4 188 52.7
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 7.7e-40 169.5 138 66.7
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 1.2e-35 155.6 187 49.2
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 2.9e-31 141.0 167 49.7
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 7.2e-30 136.3 178 46.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.2e-29 135.6 162 47.5
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 3.1e-25 120.9 120 52.5
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 7.0e-25 119.8 323 31.6
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 5.9e-24 116.7 121 54.5
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.8e-17 95.1 85 55.3
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 4.1e-17 94.0 91 57.1
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 3.9e-15 87.4 58 72.4
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-12 77.4 80 50.0
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 4.0e-12 77.4 80 50.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 4.0e-12 77.4 79 54.4
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 4.4e-11 73.9 57 63.2
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-08 65.5 37 78.4
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 2.5e-06 58.2 291 25.1


User provided reference genes

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