Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 2.9e-95 352.1 200 100.0
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.5e-51 206.8 217 67.3
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 1.8e-49 199.9 199 66.3
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 1.8e-49 199.9 199 66.3
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 2.4e-49 199.5 200 60.0
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 5.4e-49 198.4 200 61.5
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 7.0e-49 198.0 210 59.0
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 7.0e-49 198.0 200 66.0
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 1.6e-48 196.8 203 55.2
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 1.3e-47 193.7 208 53.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 1.3e-47 193.7 206 53.4
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.3e-47 193.7 198 63.1
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 3.8e-47 192.2 200 66.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 3.8e-47 192.2 200 63.0
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.1e-46 190.7 200 63.0
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.1e-46 190.7 195 64.6
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 6.1e-45 184.9 210 59.5
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 8.0e-45 184.5 201 64.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.8e-44 183.3 219 54.8
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 2.3e-44 183.0 197 59.9
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 8.9e-44 181.0 194 54.6
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.5e-43 180.3 220 57.3
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.5e-43 180.3 220 57.3
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.5e-43 180.3 204 63.7
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 5.7e-43 178.3 208 53.8
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 5.7e-43 178.3 196 53.1
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.5e-43 177.9 196 60.2
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 7.5e-43 177.9 203 51.7
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 7.5e-43 177.9 199 53.3
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 1.3e-42 177.2 202 59.9
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.2e-42 176.4 196 55.6
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 8.3e-42 174.5 216 55.1
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 1.1e-41 174.1 197 56.9
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.1e-41 174.1 230 51.7
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 1.4e-41 173.7 216 60.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 1.4e-41 173.7 209 48.3
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-41 173.3 203 49.8
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.4e-41 172.9 231 52.4
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 3.1e-41 172.6 193 57.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 4.1e-41 172.2 194 58.2
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 4.1e-41 172.2 213 54.9
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 9.2e-41 171.0 199 55.8
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.2e-41 171.0 224 46.4
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.2e-40 170.6 209 59.8
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 1.2e-40 170.6 221 59.3
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 1.6e-40 170.2 217 58.5
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 5.9e-40 168.3 195 56.4
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 7.8e-40 167.9 198 61.1
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 7.8e-40 167.9 209 57.9
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.3e-39 167.2 202 54.5
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.3e-39 167.2 207 56.5
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 1.3e-39 167.2 205 56.1
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.3e-39 166.4 209 56.0
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.9e-39 166.0 210 55.7
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 3.8e-39 165.6 219 58.0
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 5.0e-39 165.2 247 47.4
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 8.6e-39 164.5 215 52.1
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 8.6e-39 164.5 246 48.8
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 8.6e-39 164.5 200 50.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 1.5e-38 163.7 197 54.3
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 1.9e-38 163.3 209 51.2
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.5e-38 162.9 226 51.8
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 2.5e-38 162.9 203 52.7
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.5e-38 162.9 206 52.9
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 3.3e-38 162.5 210 54.8
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.3e-38 162.2 211 52.1
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 4.3e-38 162.2 207 53.6
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 4.3e-38 162.2 205 53.7
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 4.3e-38 162.2 195 56.9
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 1.6e-37 160.2 208 52.9
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 2.1e-37 159.8 210 52.9
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-37 159.5 212 51.9
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-37 159.5 212 51.9
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 2.8e-37 159.5 199 48.2
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.1e-37 158.3 191 50.8
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 8.0e-37 157.9 208 52.4
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.0e-37 157.9 198 53.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 1.4e-36 157.1 195 49.7
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 1.4e-36 157.1 200 50.5
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 1.4e-36 157.1 200 54.5
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.8e-36 156.8 205 56.1
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 2.3e-36 156.4 208 54.8
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 3.0e-36 156.0 206 51.0
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 4.0e-36 155.6 218 51.8
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.2e-36 155.2 239 50.6
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 5.2e-36 155.2 207 52.2
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 8.9e-36 154.5 213 48.8
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-35 154.1 198 53.5
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-35 153.7 218 51.8
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 2.6e-35 152.9 217 47.9
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 2.6e-35 152.9 192 46.9
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 2.6e-35 152.9 215 45.1
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 4.4e-35 152.1 208 51.0
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 4.4e-35 152.1 192 54.7
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 4.4e-35 152.1 204 52.5
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 4.4e-35 152.1 193 46.6
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 5.8e-35 151.8 191 55.0
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 5.8e-35 151.8 191 53.9
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 7.5e-35 151.4 191 54.5
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 1.3e-34 150.6 207 51.7
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.9e-34 149.4 225 41.3
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 4.9e-34 148.7 221 49.3
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 1.4e-33 147.1 234 44.4
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 2.4e-33 146.4 214 43.0
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 3.2e-33 146.0 214 43.0
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 3.2e-33 146.0 221 48.9
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.1e-33 145.6 214 52.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 5.4e-33 145.2 225 48.9
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 7.0e-33 144.8 213 51.6
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 9.2e-33 144.4 184 52.2
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.6e-32 143.7 234 39.7
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.0e-32 143.3 145 61.4
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.7e-32 142.9 208 52.4
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 2.7e-32 142.9 196 52.0
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.7e-32 142.9 206 43.2
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 3.5e-32 142.5 198 58.6
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 4.6e-32 142.1 229 51.5
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 6.0e-32 141.7 215 50.2
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 6.0e-32 141.7 210 49.5
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 2.3e-31 139.8 210 49.0
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 5.0e-31 138.7 190 50.5
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 8.6e-31 137.9 200 47.5
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 1.5e-30 137.1 216 40.3
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 4.3e-30 135.6 192 52.1
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 5.6e-30 135.2 163 46.0
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 7.3e-30 134.8 201 49.8
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 1.2e-29 134.0 201 49.8
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.8e-29 132.9 192 46.9
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 2.8e-29 132.9 203 46.3
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 8.0e-29 131.3 213 40.8
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 1.1e-28 131.0 193 49.7
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 2.3e-28 129.8 194 40.2
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 5.2e-28 128.6 190 45.8
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 5.2e-28 128.6 216 50.5
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 6.8e-28 128.3 208 54.3
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 8.9e-28 127.9 200 46.0
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 1.5e-27 127.1 197 40.1
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.6e-27 126.3 192 50.0
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 3.4e-27 125.9 189 44.4
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 7.5e-27 124.8 202 40.1
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 7.5e-27 124.8 202 40.1
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 1.4e-25 120.6 186 47.3
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-25 120.2 200 44.5
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 4.1e-25 119.0 225 49.3
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.0e-25 118.2 186 45.2
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 9.2e-25 117.9 205 41.5
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.7e-23 113.6 197 42.1
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 6.6e-23 111.7 202 38.6
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 6.6e-23 111.7 197 41.1
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 6.6e-23 111.7 202 38.6
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 6.6e-23 111.7 202 38.6
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 5.6e-22 108.6 197 40.6
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 7.3e-22 108.2 220 38.6
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 9.5e-22 107.8 143 43.4
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 2.6e-19 99.8 120 60.0
A09p38020 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-18 97.4 139 49.6
BraA09t39312Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-18 97.4 139 49.6
BcaC05g26624 Brassica carinata HOM05D003968 ORTHO05D004077 1.7e-18 97.1 141 50.4
C05p26740 Brassica napus HOM05D003968 ORTHO05D004077 1.7e-18 97.1 141 50.4
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.1e-17 94.4 188 34.6
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 7.1e-17 91.7 120 46.7
HPP92_011550 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.6e-16 90.5 161 43.5
HPP92_023087 Vanilla planifolia HOM05D003968 ORTHO05D004077 1.6e-16 90.5 225 32.9
HPP92_006446 Vanilla planifolia HOM05D003968 ORTHO05D004077 3.3e-14 82.8 236 29.2
BolC5t31398H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-13 80.9 139 45.3
Gohir.A01G021200 Gossypium hirsutum HOM05D003968 ORTHO05D004077 1.8e-12 77.0 200 40.5
Gohir.D01G019600 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.4e-12 76.6 200 40.5
Gorai.002G022000 Gossypium raimondii HOM05D003968 ORTHO05D004077 2.4e-12 76.6 200 41.0
CDE09G1092 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 6.8e-12 75.1 196 28.6
SEGI_36735 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 8.9e-12 74.7 157 33.1
CDE02G1122 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.5e-11 73.9 129 31.8
Os02g0516400 Oryza sativa ssp. japonica HOM05D003968 ORTHO05D004077 1.3e-10 70.9 107 38.3
BcaC05g26622 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-09 67.8 46 65.2
AL1G41580 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 9.2e-09 64.7 35 74.3
SEGI_14851 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 9.2e-09 64.7 157 28.7
SMO347G0048 Selaginella moellendorffii HOM05D022619 ORTHO05D026045 2.1e-08 63.5 157 39.5
SEGI_09126 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 3.5e-08 62.8 157 28.7
MBI01_g34424_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 3.9e-07 59.3 138 31.2
Atru.chr1.737 Acer truncatum HOM05D003968 ORTHO05D004077 5.1e-07 58.9 31 77.4
SEGI_23541 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 5.1e-07 58.9 149 29.5
SEGI_34313 Sequoiadendron giganteum HOM05D012184 ORTHO05D004077 6.6e-07 58.5 157 28.7
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.5e-06 56.6 178 24.7
TAR633G2309 Trochodendron aralioides HOM05D001667 ORTHO05D001508 7.3e-06 55.1 134 29.9


User provided reference genes

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