Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.1e-216 755.4 378 100.0
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.7e-131 471.9 440 61.6
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.5e-116 422.9 393 61.6
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 5.7e-68 262.3 436 41.7
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 9.7e-68 261.5 408 41.7
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 3.7e-67 259.6 408 41.7
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 6.3e-67 258.8 429 40.8
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 8.2e-67 258.5 423 40.9
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.1e-66 256.1 408 41.2
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.6e-65 254.2 403 40.4
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 3.5e-65 253.1 437 40.0
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 4.5e-65 252.7 368 43.2
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 1.3e-64 251.1 429 38.7
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 3.8e-64 249.6 436 39.2
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 6.5e-64 248.8 442 39.4
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.9e-63 247.3 431 38.5
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.9e-63 247.3 381 42.5
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 4.2e-63 246.1 465 40.4
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 4.2e-63 246.1 437 39.6
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.2e-62 244.6 407 40.3
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.2e-62 244.6 431 37.8
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 1.6e-62 244.2 426 39.2
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 1.0e-61 241.5 416 39.2
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 2.3e-61 240.4 453 39.5
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 4.0e-61 239.6 397 40.3
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 4.0e-61 239.6 397 40.3
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 5.2e-61 239.2 476 36.8
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 6.8e-61 238.8 451 38.1
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.8e-61 238.4 419 38.4
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 1.5e-60 237.7 401 40.1
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.5e-60 237.7 398 38.2
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.5e-60 237.7 398 38.4
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 2.6e-60 236.9 463 38.4
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.4e-60 236.1 437 37.8
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.4e-60 236.1 437 37.8
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 4.4e-60 236.1 442 36.7
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 5.7e-60 235.7 409 38.6
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 7.5e-60 235.3 489 35.8
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 9.8e-60 235.0 441 35.1
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 6.3e-59 232.3 396 40.2
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 8.3e-59 231.9 458 36.5
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.1e-58 231.5 404 39.9
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 1.1e-58 231.5 396 39.4
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 1.4e-58 231.1 391 39.1
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 1.4e-58 231.1 395 40.0
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.4e-58 231.1 390 38.5
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 1.8e-58 230.7 463 36.5
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.4e-58 230.3 426 37.6
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 4.1e-58 229.6 408 39.7
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 4.1e-58 229.6 424 38.2
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 7.0e-58 228.8 484 35.7
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 7.0e-58 228.8 433 37.4
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.1e-58 228.4 389 39.3
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 9.1e-58 228.4 452 35.2
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.6e-57 227.6 387 39.8
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.7e-57 226.9 411 37.2
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.7e-57 226.9 414 36.0
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 5.9e-57 225.7 439 36.4
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 5.9e-57 225.7 470 35.1
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 7.7e-57 225.3 386 38.6
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 7.7e-57 225.3 411 38.4
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 7.7e-57 225.3 384 39.8
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.0e-56 224.9 455 33.6
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 1.0e-56 224.9 413 38.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.0e-56 224.9 464 35.8
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.3e-56 224.6 406 39.7
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 1.3e-56 224.6 425 36.0
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 3.8e-56 223.0 434 37.1
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.5e-55 220.3 468 35.0
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 5.5e-55 219.2 427 35.6
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 5.5e-55 219.2 458 36.7
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.6e-54 217.6 422 36.0
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.6e-54 216.5 432 35.0
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 1.0e-53 214.9 448 36.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.0e-53 213.0 396 35.9
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 8.8e-53 211.8 485 33.6
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.2e-52 211.5 410 33.7
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.5e-52 211.1 390 38.2
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.6e-52 210.3 493 32.7
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 2.6e-52 210.3 415 38.3
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.6e-52 210.3 396 35.4
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 2.2e-51 207.2 469 32.8
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 6.3e-51 205.7 396 35.4
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 8.3e-51 205.3 446 35.7
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.8e-50 204.1 263 45.2
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.8e-50 204.1 442 33.0
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 2.4e-50 203.8 440 34.5
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 4.1e-50 203.0 391 37.6
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 5.4e-50 202.6 276 42.8
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 5.4e-50 202.6 370 38.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.0e-49 200.7 483 31.9
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.9e-49 199.1 263 44.9
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.3e-48 198.0 481 32.4
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 1.3e-48 198.0 437 33.2
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 2.3e-48 197.2 479 32.2
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.9e-48 196.8 399 35.6
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.1e-47 194.9 439 33.0
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 1.9e-47 194.1 386 35.8
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 2.5e-47 193.7 456 33.6
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 2.5e-47 193.7 418 36.6
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 3.3e-47 193.4 299 42.1
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 1.6e-46 191.0 270 43.7
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.1e-46 190.7 470 31.3
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 8.0e-46 188.7 267 42.3
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.4e-45 188.0 404 35.1
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 3.0e-45 186.8 356 38.8
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 4.0e-45 186.4 390 36.4
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 5.7e-44 182.6 453 31.3
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 7.5e-44 182.2 388 34.5
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.2e-43 180.6 392 36.0
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 3.7e-43 179.9 388 33.5
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 2.7e-41 173.7 364 35.4
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 4.6e-41 172.9 263 42.6
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 5.9e-41 172.6 389 33.7
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 1.7e-40 171.0 262 42.0
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 3.0e-40 170.2 370 35.9
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 6.6e-40 169.1 388 33.0
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 1.1e-39 168.3 252 40.9
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 4.3e-39 166.4 422 30.3
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 5.6e-39 166.0 276 38.4
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 7.3e-39 165.6 373 33.5
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 9.5e-39 165.2 398 30.7
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 1.2e-38 164.9 248 42.3
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 8.0e-38 162.2 234 43.2
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.4e-37 161.4 366 33.6
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.4e-37 161.4 267 41.6
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 1.8e-37 161.0 371 34.8
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.8e-37 161.0 345 35.9
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 2.3e-37 160.6 267 42.3
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 6.8e-37 159.1 235 42.6
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 3.7e-35 153.3 521 28.8
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 1.1e-34 151.8 237 40.1
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 1.1e-34 151.8 391 32.2
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 1.9e-34 151.0 244 39.8
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 2.4e-34 150.6 364 32.4
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 5.4e-34 149.4 247 41.3
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 7.8e-33 145.6 229 40.6
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 2.3e-32 144.1 249 38.6
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 3.0e-32 143.7 365 32.3
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 4.3e-31 139.8 251 37.8
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.8e-30 137.1 285 35.1
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 6.8e-29 132.5 266 35.0
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.5e-28 131.3 240 37.9
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 2.0e-28 131.0 240 38.3
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 9.9e-28 128.6 228 36.8
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 3.2e-26 123.6 306 32.7
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 3.5e-25 120.2 267 31.5
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 3.5e-25 120.2 292 32.2
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 3.5e-25 120.2 234 35.5
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 4.6e-25 119.8 300 30.0
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 2.3e-24 117.5 232 34.5
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 3.9e-24 116.7 313 33.2
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 5.1e-24 116.3 248 33.1
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 8.6e-24 115.5 232 34.5
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.9e-23 114.4 281 29.5
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 4.3e-23 113.2 301 29.6
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.0e-21 106.7 203 35.5
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 6.8e-21 105.9 141 41.1
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.6e-20 104.0 193 34.7
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 4.9e-19 99.8 158 38.6
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 6.4e-19 99.4 292 30.1
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 1.0e-16 92.0 136 39.0
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.9e-16 90.1 123 38.2
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 3.9e-16 90.1 253 34.0
PSO017G1120 Papaver somniferum HOM05D003497 ORTHO05D003964 3.3e-15 87.0 218 30.7
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.3e-15 85.9 391 26.1
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 7.3e-15 85.9 186 33.9
C08p22090 Brassica napus HOM05D003497 ORTHO05D024176 1.2e-14 85.1 119 40.3
BolC8t49854H Brassica oleracea HOM05D003497 ORTHO05D024176 1.2e-14 85.1 119 40.3
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 1.2e-14 85.1 118 43.2
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.6e-14 84.7 216 30.6
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 2.8e-14 84.0 274 28.1
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 6.2e-14 82.8 81 48.1
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 2.6e-12 77.4 216 27.8
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 4.4e-12 76.6 195 32.8
MCO07G198 Micromonas commoda HOM05D003497 ORTHO05D003964 5.8e-12 76.3 397 24.4
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 2.2e-11 74.3 77 53.2
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 3.8e-11 73.6 101 45.5
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.9e-11 73.2 114 43.9
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 8.4e-11 72.4 94 43.6
SEGI_41103 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 8.4e-11 72.4 191 33.5
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 1.6e-09 68.2 87 44.8
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 2.3e-08 64.3 76 44.7
arahy.Tifrunner.gnm1.ann1.D86B0Q Arachis hypogaea HOM05D003497 ORTHO05D003964 3.0e-08 63.9 85 44.7
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.1e-07 62.0 102 33.3
C03p57300 Brassica napus HOM05D003497 ORTHO05D003964 2.5e-07 60.8 155 29.7
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 5.6e-07 59.7 71 45.1


User provided reference genes

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