Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03364 Eucalyptus grandis HOM05D005130 ORTHO05D006185 2.6e-42 174.9 82 100.0
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 4.6e-23 110.9 66 80.3
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 4.6e-23 110.9 66 80.3
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 1.8e-22 109.0 66 78.8
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 8.7e-22 106.7 66 75.8
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 1.5e-21 105.9 66 75.8
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 1.5e-21 105.9 66 75.8
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 2.5e-21 105.1 66 75.8
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 5.6e-21 104.0 81 64.2
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 5.6e-21 104.0 66 74.2
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 9.6e-21 103.2 66 74.2
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 9.6e-21 103.2 66 74.2
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 72.7
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 1.3e-20 102.8 66 74.2
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 72.7
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 72.7
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 72.7
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 72.7
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 72.7
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 71.2
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 71.2
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 2.1e-20 102.1 66 74.2
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 2.8e-20 101.7 66 75.8
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 2.8e-20 101.7 66 74.2
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 2.8e-20 101.7 66 72.7
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 2.8e-20 101.7 66 72.7
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 74.2
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 71.2
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 3.7e-20 101.3 66 71.2
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 72.7
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 72.7
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 74.2
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 3.7e-20 101.3 66 69.7
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 4.8e-20 100.9 66 71.2
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 4.8e-20 100.9 66 71.2
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 4.8e-20 100.9 66 71.2
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 4.8e-20 100.9 66 72.7
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 74.2
arahy.Tifrunner.gnm1.ann1.3XEJ8W Arachis hypogaea HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 74.2
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 74.2
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 74.2
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 72.7
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 72.7
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 72.7
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 71.2
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 6.2e-20 100.5 66 72.7
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 72.7
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 72.7
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 71.2
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 74.2
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 74.2
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 8.1e-20 100.1 66 72.7
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 1.1e-19 99.8 66 71.2
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 1.1e-19 99.8 66 69.7
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 1.1e-19 99.8 66 71.2
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 1.1e-19 99.8 66 71.2
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 1.4e-19 99.4 66 72.7
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 1.4e-19 99.4 66 71.2
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 1.8e-19 99.0 66 69.7
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 1.8e-19 99.0 66 69.7
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 1.8e-19 99.0 66 71.2
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 2.4e-19 98.6 66 71.2
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 2.4e-19 98.6 66 71.2
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 2.4e-19 98.6 66 69.7
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 2.4e-19 98.6 66 69.7
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 2.4e-19 98.6 66 69.7
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 3.1e-19 98.2 66 71.2
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 3.1e-19 98.2 66 69.7
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 3.1e-19 98.2 66 72.7
Haze_11084 Corylus avellana HOM05D005130 ORTHO05D006185 3.1e-19 98.2 66 71.2
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 3.1e-19 98.2 66 71.2
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 4.0e-19 97.8 66 69.7
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 4.0e-19 97.8 66 69.7
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 4.0e-19 97.8 66 69.7
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 4.0e-19 97.8 66 69.7
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 4.0e-19 97.8 66 69.7
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 5.3e-19 97.4 66 71.2
TAR374G0198 Trochodendron aralioides HOM05D002676 ORTHO05D006185 5.3e-19 97.4 50 88.0
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 6.9e-19 97.1 49 91.8
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 6.9e-19 97.1 66 69.7
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 6.9e-19 97.1 49 87.8
COL.COLO4_25325 Corchorus olitorius HOM05D005130 ORTHO05D006185 9.0e-19 96.7 66 69.7
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 9.0e-19 96.7 67 71.6
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 9.0e-19 96.7 66 71.2
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 9.0e-19 96.7 66 69.7
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 9.0e-19 96.7 66 68.2
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 1.2e-18 96.3 66 69.7
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 1.2e-18 96.3 66 66.7
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 1.5e-18 95.9 66 68.2
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 1.5e-18 95.9 66 68.2
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 2.6e-18 95.1 49 89.8
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 2.6e-18 95.1 66 66.7
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 2.6e-18 95.1 49 89.8
Ah.05g173340 Amaranthus hybridus HOM05D005130 ORTHO05D006185 3.4e-18 94.7 66 69.7
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 3.4e-18 94.7 66 65.2
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 4.5e-18 94.4 66 65.2
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 5.8e-18 94.0 66 68.2
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 7.6e-18 93.6 49 87.8
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 7.6e-18 93.6 67 68.7
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 1.3e-17 92.8 67 68.7
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 2.2e-17 92.0 49 87.8
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 2.9e-17 91.7 66 65.2
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 2.9e-17 91.7 66 65.2
AUR62004123 Chenopodium quinoa HOM05D005130 ORTHO05D006185 8.4e-17 90.1 66 66.7
AUR62013718 Chenopodium quinoa HOM05D005130 ORTHO05D006185 8.4e-17 90.1 66 66.7
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 7.1e-16 87.0 81 54.3
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 9.3e-16 86.7 66 63.6
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 1.2e-15 86.3 49 79.6
CBR_g12583 Chara braunii HOM05D005130 ORTHO05D006185 5.1e-14 80.9 47 78.7
Pp3c12_8100 Physcomitrium patens HOM05D005130 ORTHO05D006185 6.7e-14 80.5 66 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 2.5e-13 78.6 66 57.6
ATR0785G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 5.7e-13 77.4 48 70.8
TPR.G4673 Trifolium pratense HOM05D005130 ORTHO05D006185 5.7e-13 77.4 41 82.9
BcaB07g33562 Brassica carinata HOM05D005130 ORTHO05D006185 7.4e-13 77.0 48 72.9
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 6.2e-12 73.9 50 68.0
SMO203G0049 Selaginella moellendorffii HOM05D005130 ORTHO05D006185 5.3e-11 70.9 48 66.7
ATR1011G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 3.2e-08 61.6 38 71.1
FAN06G1878 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.9e-07 57.0 40 67.5
FAN06G4366 Fragaria x ananassa HOM05D000100 ORTHO05D000052 7.9e-07 57.0 40 67.5
ATR0350G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 1.0e-06 56.6 38 63.2


User provided reference genes

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