Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03331 Eucalyptus grandis HOM05D003144 ORTHO05D003539 4.0e-60 234.6 119 100.0
Eucgr.H03322 Eucalyptus grandis HOM05D003144 ORTHO05D003539 4.9e-34 147.9 125 70.4
TWI09G0554 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 1.0e-23 113.6 98 54.1
Ciclev10026261m.g Citrus clementina HOM05D003144 ORTHO05D003539 3.0e-23 112.1 120 50.8
Sed0003710 Sechium edule HOM05D003144 ORTHO05D003539 3.9e-23 111.7 122 55.7
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 8.7e-23 110.5 99 59.6
GSVIVG01018921001 Vitis vinifera HOM05D003144 ORTHO05D003539 1.1e-22 110.2 122 54.1
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 1.5e-22 109.8 89 60.7
Cpa.g.c32372 Carica papaya HOM05D003144 ORTHO05D003539 3.3e-22 108.6 98 57.1
Lj4A205T21 Lonicera japonica HOM05D003144 ORTHO05D003539 3.3e-22 108.6 109 56.0
CANSAT01G2043 Cannabis sativa HOM05D003144 ORTHO05D003539 4.3e-22 108.2 97 53.6
ClCG01G019760 Citrullus lanatus HOM05D003144 ORTHO05D003539 7.4e-22 107.5 122 53.3
MELO3C007843.2 Cucumis melo HOM05D003144 ORTHO05D003539 1.3e-21 106.7 102 56.9
Dinv13496 Davidia involucrata HOM05D003144 ORTHO05D003539 1.3e-21 106.7 122 53.3
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 1.3e-21 106.7 103 55.3
CiPaw.02G020200 Carya illinoinensis HOM05D003144 ORTHO05D003539 4.8e-21 104.8 122 52.5
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 4.8e-21 104.8 123 50.4
Hund13998 Selenicereus undatus HOM05D003144 ORTHO05D003539 1.4e-20 103.2 98 56.1
Nitab4.5_0000136g0260 Nicotiana tabacum HOM05D003144 ORTHO05D003539 6.9e-20 100.9 87 62.1
Actinidia19199 Actinidia chinensis HOM05D003144 ORTHO05D003539 9.0e-20 100.5 109 55.0
COL.COLO4_22036 Corchorus olitorius HOM05D003144 ORTHO05D003539 9.0e-20 100.5 97 55.7
SGA_v2.0_scaffold12G06312 Striga asiatica HOM05D003144 ORTHO05D003539 1.5e-19 99.8 80 58.8
Nitab4.5_0008397g0010 Nicotiana tabacum HOM05D003144 ORTHO05D003539 2.0e-19 99.4 98 57.1
Actinidia35629 Actinidia chinensis HOM05D003144 ORTHO05D003539 2.6e-19 99.0 109 55.0
CiPaw.01G045400 Carya illinoinensis HOM05D003144 ORTHO05D003539 2.6e-19 99.0 102 53.9
SGA_v2.0_scaffold10G05189 Striga asiatica HOM05D000001 ORTHO05D022897 2.6e-19 99.0 88 55.7
Thecc.01G030700 Theobroma cacao HOM05D003144 ORTHO05D003539 3.4e-19 98.6 81 60.5
CAN.G53.3 Capsicum annuum HOM05D003144 ORTHO05D003539 4.5e-19 98.2 75 65.3
CAN.G358.47 Capsicum annuum HOM05D003144 ORTHO05D003539 7.7e-19 97.4 93 55.9
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 7.7e-19 97.4 123 48.8
CiPaw.01G045100 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.0e-18 97.1 102 53.9
Atru.chr3.630 Acer truncatum HOM05D003144 ORTHO05D003539 1.7e-18 96.3 121 47.9
Thecc.01G031300 Theobroma cacao HOM05D003144 ORTHO05D003539 1.7e-18 96.3 82 58.5
CAN.G53.4 Capsicum annuum HOM05D003144 ORTHO05D003539 2.2e-18 95.9 76 63.2
Solyc02g062580.3 Solanum lycopersicum HOM05D003144 ORTHO05D003539 2.9e-18 95.5 78 57.7
Sopen02g013600 Solanum pennellii HOM05D003144 ORTHO05D003539 2.9e-18 95.5 78 57.7
AL8G45090 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 3.8e-18 95.1 80 55.0
THA.LOC104826672 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 3.8e-18 95.1 104 48.1
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 6.5e-18 94.4 82 54.9
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 8.5e-18 94.0 99 49.5
Sabra07G0018700 Salix brachista HOM05D003144 ORTHO05D003539 8.5e-18 94.0 126 46.8
MSTRG.2483 Avicennia marina HOM05D003144 ORTHO05D003539 1.1e-17 93.6 89 56.2
AUR62007600 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.1e-17 93.6 83 54.2
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 1.1e-17 93.6 99 50.5
Sc03g0003130 Simmondsia chinensis HOM05D003144 ORTHO05D003539 1.1e-17 93.6 102 53.9
PGSC0003DMG400015511 Solanum tuberosum HOM05D003144 ORTHO05D003539 1.1e-17 93.6 74 62.2
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.4e-17 93.2 83 55.4
Cc07_g09870 Coffea canephora HOM05D003144 ORTHO05D003539 1.4e-17 93.2 82 52.4
Gohir.D12G063300 Gossypium hirsutum HOM05D003144 ORTHO05D003539 1.4e-17 93.2 81 60.5
Gorai.008G066600 Gossypium raimondii HOM05D003144 ORTHO05D003539 1.4e-17 93.2 81 60.5
Lj2C456G10 Lonicera japonica HOM05D003144 ORTHO05D003539 1.4e-17 93.2 122 50.8
RcHm_v2.0_Chr2g0100911 Rosa chinensis HOM05D003144 ORTHO05D003539 1.4e-17 93.2 100 51.0
SalBow8G0597 Salvia bowleyana HOM05D003144 ORTHO05D003539 1.4e-17 93.2 80 53.8
Hma1.2p1_1297F.1_g274090 Hydrangea macrophylla HOM05D003144 ORTHO05D003539 1.9e-17 92.8 102 52.0
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 2.5e-17 92.4 103 46.6
SalBow1G7215 Salvia bowleyana HOM05D003144 ORTHO05D003539 2.5e-17 92.4 86 51.2
SalBow1G7918 Salvia bowleyana HOM05D003144 ORTHO05D003539 2.5e-17 92.4 86 51.2
SalBow8G4131 Salvia bowleyana HOM05D003144 ORTHO05D003539 2.5e-17 92.4 80 53.8
FAN19G1139 Fragaria x ananassa HOM05D003144 ORTHO05D003539 3.2e-17 92.0 102 51.0
QL06p047123 Quercus lobata HOM05D003144 ORTHO05D003539 3.2e-17 92.0 109 51.4
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 3.2e-17 92.0 99 49.5
FAN23G2566 Fragaria x ananassa HOM05D003144 ORTHO05D003539 5.5e-17 91.3 102 50.0
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 5.5e-17 91.3 93 57.0
MD15G1256700 Malus domestica HOM05D003144 ORTHO05D003539 5.5e-17 91.3 124 46.0
Peaxi162Scf00008g03417 Petunia axillaris HOM05D003144 ORTHO05D003539 5.5e-17 91.3 84 58.3
Oeu027431.1 Olea europaea HOM05D003144 ORTHO05D003539 7.2e-17 90.9 98 50.0
Peaxi162Scf00366g00815 Petunia axillaris HOM05D003144 ORTHO05D003539 7.2e-17 90.9 91 52.7
AL5G31280 Arabidopsis lyrata HOM05D003144 ORTHO05D003539 9.4e-17 90.5 104 49.0
BcaNung05718 Brassica carinata HOM05D003144 ORTHO05D003539 9.4e-17 90.5 80 52.5
Thhalv10004725m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 9.4e-17 90.5 106 46.2
PGSC0003DMG402003606 Solanum tuberosum HOM05D003144 ORTHO05D003539 9.4e-17 90.5 93 54.8
Aqoxy6G01164 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 1.2e-16 90.1 123 44.7
A02p44530 Brassica napus HOM05D003144 ORTHO05D003539 1.2e-16 90.1 80 56.2
FAN26G2828 Fragaria x ananassa HOM05D003144 ORTHO05D003539 1.2e-16 90.1 102 49.0
FAN28G2032 Fragaria x ananassa HOM05D003144 ORTHO05D003539 1.2e-16 90.1 102 49.0
Lj2g0003092 Lotus japonicus HOM05D003144 ORTHO05D003539 1.2e-16 90.1 89 52.8
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 1.2e-16 90.1 124 43.5
BcaB02g10029 Brassica carinata HOM05D003144 ORTHO05D003539 1.6e-16 89.7 83 50.6
CARHR281300 Cardamine hirsuta HOM05D003144 ORTHO05D003539 1.6e-16 89.7 81 54.3
CiPaw.01G044800 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.6e-16 89.7 62 69.4
Carub.0005s1731 Capsella rubella HOM05D003144 ORTHO05D003539 2.1e-16 89.4 90 52.2
FvH4_1g12790 Fragaria vesca HOM05D003144 ORTHO05D003539 2.1e-16 89.4 102 50.0
Gohir.A12G063500 Gossypium hirsutum HOM05D003144 ORTHO05D003539 2.1e-16 89.4 81 59.3
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 2.1e-16 89.4 103 52.4
Prupe.7G158200 Prunus persica HOM05D003144 ORTHO05D003539 2.7e-16 89.0 104 47.1
Ah.03g141130 Amaranthus hybridus HOM05D003144 ORTHO05D003539 3.6e-16 88.6 110 47.3
Carub.0008s2807 Capsella rubella HOM05D003144 ORTHO05D003539 3.6e-16 88.6 83 53.0
BcaC04g23127 Brassica carinata HOM05D003144 ORTHO05D003539 4.6e-16 88.2 84 53.6
Glyma.01G171800 Glycine max HOM05D003144 ORTHO05D003539 4.6e-16 88.2 99 48.5
Solyc02g084970.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 4.6e-16 88.2 87 49.4
AT3G50920 Arabidopsis thaliana HOM05D003144 ORTHO05D003539 6.1e-16 87.8 93 51.6
Duzib264G0171 Durio zibethinus HOM05D003144 ORTHO05D003539 6.1e-16 87.8 82 53.7
MD02G1143500 Malus domestica HOM05D003144 ORTHO05D003539 7.9e-16 87.4 114 48.2
BcaC06g34705 Brassica carinata HOM05D003144 ORTHO05D003539 1.0e-15 87.0 84 52.4
A07p17510 Brassica napus HOM05D003144 ORTHO05D003539 1.0e-15 87.0 84 52.4
C07p25440 Brassica napus HOM05D003144 ORTHO05D003539 1.0e-15 87.0 84 52.4
CiPaw.01G045600 Carya illinoinensis HOM05D003144 ORTHO05D003539 1.0e-15 87.0 82 59.8
Ca_22297_v3 Cicer arietinum L. HOM05D003144 ORTHO05D003539 1.0e-15 87.0 85 50.6
Ca_22327_v3 Cicer arietinum L. HOM05D003144 ORTHO05D003539 1.0e-15 87.0 85 50.6
AT5G66450 Arabidopsis thaliana HOM05D003144 ORTHO05D003539 1.4e-15 86.7 90 51.1
BcaC03g18414 Brassica carinata HOM05D003144 ORTHO05D003539 1.4e-15 86.7 104 45.2
BcaC03g18420 Brassica carinata HOM05D003144 ORTHO05D003539 1.4e-15 86.7 104 45.2
TAR381G0836 Trochodendron aralioides HOM05D003144 ORTHO05D003539 1.4e-15 86.7 107 49.5
BcaB07g29666 Brassica carinata HOM05D003144 ORTHO05D003539 1.8e-15 86.3 101 45.5
BraA07t29471Z Brassica rapa HOM05D003144 ORTHO05D003539 1.8e-15 86.3 84 51.2
CARHR160490 Cardamine hirsuta HOM05D003144 ORTHO05D003539 1.8e-15 86.3 88 53.4
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 1.8e-15 86.3 85 54.1
EL10As8g23913 Beta vulgaris HOM05D003144 ORTHO05D003539 2.3e-15 85.9 110 49.1
THA.LOC104819202 Tarenaya hassleriana HOM05D003144 ORTHO05D003539 2.3e-15 85.9 104 42.3
C02p64930 Brassica napus HOM05D003144 ORTHO05D003539 3.0e-15 85.5 104 44.2
C09p11850 Brassica napus HOM05D003144 ORTHO05D003539 3.0e-15 85.5 84 51.2
Lj4g0005388 Lotus japonicus HOM05D003144 ORTHO05D003539 3.0e-15 85.5 83 51.8
TPR.G24094 Trifolium pratense HOM05D003144 ORTHO05D003539 3.0e-15 85.5 85 50.6
Oeu027432.1 Olea europaea HOM05D003144 ORTHO05D003539 5.1e-15 84.7 80 51.2
Psat4g094960 Pisum sativum HOM05D003144 ORTHO05D003539 5.1e-15 84.7 99 48.5
Manes.01G138300 Manihot esculenta HOM05D003144 ORTHO05D003539 6.7e-15 84.3 102 44.1
Rhsim08G0119800 Rhododendron simsii HOM05D003144 ORTHO05D003539 6.7e-15 84.3 119 43.7
Sopen02g029640 Solanum pennellii HOM05D003144 ORTHO05D003539 6.7e-15 84.3 87 47.1
Aa31LG1G14970 Aethionema arabicum HOM05D003144 ORTHO05D003539 8.8e-15 84.0 85 48.2
A09p09990 Brassica napus HOM05D003144 ORTHO05D003539 8.8e-15 84.0 84 51.2
DCAR_025959 Daucus carota HOM05D003144 ORTHO05D003539 1.1e-14 83.6 84 50.0
PSO675G6275 Papaver somniferum HOM05D003144 ORTHO05D003539 1.1e-14 83.6 126 43.7
Sp5g11310 Schrenkiella parvula HOM05D003144 ORTHO05D003539 1.1e-14 83.6 103 46.6
vmacro17810 Vaccinium macrocarpon HOM05D003144 ORTHO05D003539 1.1e-14 83.6 117 46.2
Peaxi162Scf00366g00819 Petunia axillaris HOM05D003144 ORTHO05D003539 2.5e-14 82.4 74 51.4
unitig_736.g22638 Utricularia gibba HOM05D003144 ORTHO05D003539 2.5e-14 82.4 81 49.4
vmacro19036 Vaccinium macrocarpon HOM05D003144 ORTHO05D003539 3.3e-14 82.0 83 54.2
Dinv40014 Davidia involucrata HOM05D003144 ORTHO05D003539 4.3e-14 81.6 83 53.0
PSO541G0707 Papaver somniferum HOM05D003144 ORTHO05D003539 4.3e-14 81.6 127 44.1
ECA246G3280 Erigeron canadensis HOM05D000625 ORTHO05D000467 5.7e-14 81.3 100 52.0
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 5.7e-14 81.3 85 48.2
HanXRQChr16g0530671 Helianthus annuus HOM05D003144 ORTHO05D003539 7.4e-14 80.9 80 53.8
Medtr8g077120 Medicago truncatula HOM05D003144 ORTHO05D003539 9.7e-14 80.5 83 49.4
TPR.G39284 Trifolium pratense HOM05D003144 ORTHO05D003539 2.2e-13 79.3 85 47.1
PSO675G8035 Papaver somniferum HOM05D003144 ORTHO05D003539 3.7e-13 78.6 127 43.3
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 3.7e-13 78.6 85 45.9
CsaV3_6G046460 Cucumis sativus L. HOM05D003144 ORTHO05D003539 4.8e-13 78.2 70 58.6
Sp2g30280 Schrenkiella parvula HOM05D003144 ORTHO05D003539 4.8e-13 78.2 94 46.8
C07p46050 Brassica napus HOM05D003144 ORTHO05D003539 6.3e-13 77.8 80 55.0
Aa31LG4G19020 Aethionema arabicum HOM05D003144 ORTHO05D003539 8.2e-13 77.4 79 46.8
AUR62007599 Chenopodium quinoa HOM05D003144 ORTHO05D003539 8.2e-13 77.4 82 45.1
Sed0014839 Sechium edule HOM05D003144 ORTHO05D003539 1.8e-12 76.3 123 43.9
Aqoxy1G03994 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 3.1e-12 75.5 64 50.0
BolC7t45122H Brassica oleracea HOM05D003144 ORTHO05D003539 3.1e-12 75.5 80 53.8
CSS0016259 Camellia sinensis var. sinensis HOM05D003144 ORTHO05D003539 3.1e-12 75.5 76 56.6
Thhalv10010693m.g Eutrema salsugineum HOM05D003144 ORTHO05D003539 3.1e-12 75.5 98 45.9
BcaC06g33334 Brassica carinata HOM05D003144 ORTHO05D003539 4.1e-12 75.1 80 53.8
Sopen02g013590 Solanum pennellii HOM05D003144 ORTHO05D003539 5.3e-12 74.7 73 53.4
arahy.Tifrunner.gnm1.ann1.U5PEZY Arachis hypogaea HOM05D003144 ORTHO05D003539 6.9e-12 74.3 78 53.8
Nn1g04920 Nelumbo nucifera HOM05D003144 ORTHO05D003539 6.9e-12 74.3 70 57.1
DCAR_021484 Daucus carota HOM05D003144 ORTHO05D003539 9.1e-12 73.9 79 50.6
Aqoxy1G03997 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 1.2e-11 73.6 59 50.8
arahy.Tifrunner.gnm1.ann1.SCCL3I Arachis hypogaea HOM05D003144 ORTHO05D003539 2.0e-11 72.8 78 52.6
Duzib187G1304 Durio zibethinus HOM05D003144 ORTHO05D003539 2.0e-11 72.8 73 46.6
Solyc02g062570.4 Solanum lycopersicum HOM05D003144 ORTHO05D003539 2.0e-11 72.8 73 52.1
BcaC07g39560 Brassica carinata HOM05D003144 ORTHO05D003539 3.4e-11 72.0 60 56.7
A03p48030 Brassica napus HOM05D003144 ORTHO05D003539 3.4e-11 72.0 80 50.0
HPP92_013478 Vanilla planifolia HOM05D003144 ORTHO05D003539 5.9e-11 71.2 56 55.4
BraA03t13911Z Brassica rapa HOM05D003144 ORTHO05D003539 1.0e-10 70.5 80 50.0
BcaC06g33065 Brassica carinata HOM05D003144 ORTHO05D003539 1.3e-10 70.1 80 48.8
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 1.3e-10 70.1 49 69.4
arahy.Tifrunner.gnm1.ann1.IPKV79 Arachis hypogaea HOM05D003144 ORTHO05D003539 1.7e-10 69.7 95 44.2
CDE06G2543 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 1.7e-10 69.7 63 49.2
ATR0568G217 Amborella trichopoda HOM05D003144 ORTHO05D003539 3.8e-10 68.6 56 51.8
Aqoxy4G01844 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 6.5e-10 67.8 105 41.0
BcaC09g50308 Brassica carinata HOM05D003144 ORTHO05D003539 8.5e-10 67.4 80 48.8
arahy.Tifrunner.gnm1.ann1.005S9P Arachis hypogaea HOM05D003144 ORTHO05D003539 1.4e-09 66.6 95 41.1
Lsat_1_v5_gn_2_77541 Lactuca sativa HOM05D003144 ORTHO05D003539 3.2e-09 65.5 88 44.3
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 3.2e-09 65.5 78 48.7
Aqoxy1G03996 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 5.5e-09 64.7 81 39.5
CDE11G1071 Ceratophyllum demersum HOM05D003144 ORTHO05D003539 9.4e-09 63.9 59 50.8
PSO541G4762 Papaver somniferum HOM05D003144 ORTHO05D003539 1.2e-08 63.5 48 58.3
RcHm_v2.0_Chr2g0100921 Rosa chinensis HOM05D003144 ORTHO05D003539 1.2e-08 63.5 96 39.6
Zm00001eb188310 Zea mays HOM05D003144 ORTHO05D003539 1.2e-08 63.5 78 44.9
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 1.6e-08 63.2 50 54.0
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 1.6e-08 63.2 58 51.7
C08p26130 Brassica napus HOM05D003144 ORTHO05D003539 7.9e-08 60.8 49 55.1
Os02g0704500 Oryza sativa ssp. japonica HOM05D003144 ORTHO05D003539 7.9e-08 60.8 85 40.0
Zm00001eb252000 Zea mays HOM05D003144 ORTHO05D003539 1.4e-07 60.1 78 43.6
PSO541G6245 Papaver somniferum HOM05D003144 ORTHO05D003539 2.3e-07 59.3 72 47.2
C02p49610 Brassica napus HOM05D003144 ORTHO05D003539 3.0e-07 58.9 50 56.0
C01p26790 Brassica napus HOM05D003144 ORTHO05D003539 6.7e-07 57.8 50 56.0
BolC8t49872H Brassica oleracea HOM05D003144 ORTHO05D003539 6.7e-07 57.8 50 56.0
PSO339G2437 Papaver somniferum HOM05D003144 ORTHO05D003539 6.7e-07 57.8 69 49.3
Nitab4.5_0001617g0030 Nicotiana tabacum HOM05D003144 ORTHO05D003539 7.4e-06 54.3 43 58.1
SEGI_19312 Sequoiadendron giganteum HOM05D003144 ORTHO05D003539 7.4e-06 54.3 95 35.8
Psat7g022240 Pisum sativum HOM05D003144 ORTHO05D003539 9.7e-06 53.9 40 60.0


User provided reference genes

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