Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.1e-57 226.5 116 100.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.1e-41 171.8 121 76.9
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.5e-40 169.5 95 87.4
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.9e-36 154.8 99 79.8
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.6e-35 152.1 101 79.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.7e-35 151.0 94 79.8
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 7.4e-35 150.6 87 82.8
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.7e-35 150.2 91 82.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 1.3e-34 149.8 95 76.8
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.3e-34 149.8 90 81.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.8e-34 148.7 93 75.3
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 4.8e-34 147.9 93 75.3
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 6.3e-34 147.5 93 75.3
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 6.3e-34 147.5 89 77.5
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 6.3e-34 147.5 89 77.5
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 6.3e-34 147.5 93 75.3
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 6.3e-34 147.5 89 77.5
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 6.3e-34 147.5 116 70.7
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.3e-34 147.5 90 78.9
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 8.2e-34 147.1 98 73.5
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 8.2e-34 147.1 90 81.1
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.1e-33 146.7 97 77.3
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-33 146.7 90 76.7
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.1e-33 146.7 85 82.4
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.1e-33 146.7 85 82.4
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.1e-33 146.7 85 82.4
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.1e-33 146.7 88 78.4
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.8e-33 146.0 116 69.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.4e-33 145.6 86 81.4
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.1e-33 145.2 87 79.3
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 3.1e-33 145.2 97 75.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.1e-33 145.2 87 79.3
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 4.1e-33 144.8 86 81.4
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 4.1e-33 144.8 86 81.4
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 4.1e-33 144.8 119 66.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 4.1e-33 144.8 87 80.5
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.1e-33 144.8 98 75.5
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 4.1e-33 144.8 97 75.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 5.3e-33 144.4 105 72.4
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 5.3e-33 144.4 90 77.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.3e-33 144.4 116 69.0
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 7.0e-33 144.1 114 66.7
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 7.0e-33 144.1 96 75.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 7.0e-33 144.1 96 75.0
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 9.1e-33 143.7 113 65.5
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 9.1e-33 143.7 90 80.0
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 9.1e-33 143.7 89 78.7
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 9.1e-33 143.7 93 75.3
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 9.1e-33 143.7 87 79.3
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 1.2e-32 143.3 88 76.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.2e-32 143.3 90 75.6
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.2e-32 143.3 90 77.8
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.2e-32 143.3 87 79.3
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 87 80.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 1.5e-32 142.9 90 77.8
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.0e-32 142.5 113 64.6
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.0e-32 142.5 100 76.0
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 2.0e-32 142.5 97 74.2
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.6e-32 142.1 97 71.1
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 2.6e-32 142.1 95 74.7
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.6e-32 142.1 116 68.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 3.5e-32 141.7 99 72.7
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 3.5e-32 141.7 119 65.5
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.5e-32 141.4 87 78.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.5e-32 141.4 98 69.4
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 4.5e-32 141.4 94 74.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 5.9e-32 141.0 97 73.2
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.9e-32 141.0 85 77.6
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 5.9e-32 141.0 86 79.1
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 7.7e-32 140.6 86 75.6
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 7.7e-32 140.6 87 79.3
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.3e-31 139.8 94 73.4
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.3e-31 139.8 89 77.5
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.7e-31 139.4 88 77.3
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.7e-31 139.4 90 77.8
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.7e-31 139.4 98 72.4
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.7e-31 139.4 97 72.2
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.2e-31 139.0 89 77.5
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.2e-31 139.0 80 80.0
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.9e-31 138.7 105 70.5
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.9e-31 138.7 109 69.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 3.8e-31 138.3 87 75.9
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 3.8e-31 138.3 114 64.9
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.5e-31 137.5 105 69.5
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 6.5e-31 137.5 100 71.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 8.5e-31 137.1 87 77.0
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 1.1e-30 136.7 88 73.9
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 64.0
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.9e-30 136.0 87 74.7
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 4.2e-30 134.8 112 61.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 4.2e-30 134.8 88 72.7
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 4.2e-30 134.8 114 65.8
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 7.2e-30 134.0 88 72.7
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.2e-30 134.0 88 71.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 88 75.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 88 75.0
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.2e-29 133.3 88 75.0
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 1.6e-29 132.9 87 74.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.6e-29 132.9 88 75.0
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 2.1e-29 132.5 113 61.9
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.7e-29 132.1 88 73.9
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.6e-29 131.7 112 64.3
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 3.6e-29 131.7 110 63.6
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 4.7e-29 131.3 112 63.4
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 8.0e-29 130.6 76 80.3
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.0e-28 130.2 88 70.5
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.4e-28 129.8 126 59.5
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 1.8e-28 129.4 89 71.9
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.8e-28 129.4 78 80.8
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.0e-28 128.6 87 71.3
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.0e-28 128.6 90 68.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.9e-28 128.3 113 61.1
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.2e-28 127.9 84 71.4
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.0e-27 125.9 157 51.0
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.6e-27 125.6 86 72.1
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.3e-27 125.2 96 67.7
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.7e-27 124.4 88 70.5
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 5.7e-27 124.4 90 67.8
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 7.4e-27 124.0 85 70.6
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.3e-26 123.2 88 70.5
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.7e-26 121.7 116 57.8
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.7e-26 121.7 161 47.2
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 4.8e-26 121.3 92 66.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.5e-24 115.2 72 75.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 4.5e-24 114.8 104 59.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 4.5e-24 114.8 78 69.2
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 5.9e-24 114.4 78 67.9
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.9e-23 112.1 82 67.1
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 2.5e-22 109.0 116 52.6
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.6e-21 106.3 79 63.3
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.2e-20 101.3 67 74.6
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 6.8e-20 100.9 212 36.8
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-19 100.1 76 73.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.6e-19 99.0 90 60.0
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.6e-19 99.0 65 76.9
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 4.4e-19 98.2 107 58.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.7e-19 97.8 86 61.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 5.7e-19 97.8 86 61.6
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.8e-18 94.7 65 73.8
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 1.1e-17 93.6 70 67.1
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.6e-16 89.7 53 79.2
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 1.6e-16 89.7 61 73.8
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.7e-16 89.0 61 75.4
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 7.7e-16 87.4 74 60.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-15 86.7 72 61.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-15 86.7 72 61.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.3e-15 86.7 51 80.4
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.0e-15 84.7 81 51.9
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 6.5e-15 84.3 54 79.6
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.1e-14 83.6 80 53.8
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.9e-14 82.8 68 52.9
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.8e-12 76.3 54 68.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 5.2e-12 74.7 67 56.7
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 5.7e-11 71.2 63 57.1
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.3e-10 70.1 48 75.0
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.2e-10 69.3 68 47.1
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 4.1e-09 65.1 62 58.1
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 9.1e-09 63.9 50 72.0
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-07 60.1 72 45.8
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.7e-07 59.7 78 42.3
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.3e-07 59.3 65 44.6


User provided reference genes

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