Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.5e-129 466.5 240 100.0
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 3.9e-98 362.1 228 80.7
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 2.5e-97 359.4 230 78.3
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.0e-95 354.0 249 73.1
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 1.4e-95 353.6 248 74.2
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 1.8e-95 353.2 224 78.6
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 2.9e-93 345.9 229 76.0
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 5.4e-92 341.7 229 76.9
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.7e-91 339.3 240 72.5
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 2.7e-91 339.3 250 70.8
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.3e-90 337.0 243 71.2
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 2.5e-89 332.8 236 72.0
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 2.5e-89 332.8 234 72.6
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 4.3e-89 332.0 248 70.6
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.1e-87 327.4 244 68.4
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.4e-87 327.0 243 68.3
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 4.0e-87 325.5 217 74.7
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.5e-86 323.6 251 68.1
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.5e-86 323.6 230 73.0
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 4.4e-86 322.0 240 68.8
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 4.4e-86 322.0 242 69.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.3e-85 320.5 231 72.3
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 1.7e-85 320.1 229 71.2
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 2.2e-85 319.7 253 66.8
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 3.7e-85 318.9 211 75.8
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 6.4e-85 318.2 208 76.9
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 3.2e-84 315.8 230 70.0
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 4.1e-84 315.5 230 72.2
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 5.4e-84 315.1 234 68.4
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 7.1e-84 314.7 253 63.2
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 9.2e-84 314.3 240 67.9
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 3.5e-83 312.4 230 69.6
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 4.6e-83 312.0 239 68.6
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 6.0e-83 311.6 232 67.7
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 7.8e-83 311.2 229 70.3
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 7.8e-83 311.2 227 68.7
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.0e-82 310.8 209 74.6
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 5.1e-82 308.5 209 73.2
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 3.3e-81 305.8 231 68.8
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 4.3e-81 305.4 230 68.7
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 5.6e-81 305.1 221 66.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 9.5e-81 304.3 230 71.3
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 9.5e-81 304.3 237 65.8
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 6.2e-80 301.6 206 73.8
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 2.3e-79 299.7 235 68.5
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 1.2e-78 297.4 209 67.0
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 3.4e-78 295.8 225 67.6
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 5.8e-78 295.0 214 67.3
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.7e-77 293.5 204 71.6
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 4.9e-77 292.0 216 70.8
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 6.4e-77 291.6 240 66.2
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.4e-76 290.4 218 67.0
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.4e-76 289.7 221 67.9
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 4.1e-76 288.9 218 68.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 5.4e-76 288.5 233 66.5
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 5.4e-76 288.5 204 71.1
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 9.2e-76 287.7 205 70.2
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 9.2e-76 287.7 225 66.7
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.0e-74 284.3 210 68.1
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 1.3e-74 283.9 202 67.3
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 2.3e-74 283.1 230 64.8
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 5.1e-74 282.0 220 63.6
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 8.6e-74 281.2 206 67.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.1e-73 280.8 253 56.9
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 1.5e-73 280.4 232 63.8
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 1.5e-73 280.4 213 66.7
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 7.3e-73 278.1 209 64.6
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.3e-73 278.1 248 62.1
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 9.6e-73 277.7 231 60.2
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 6.2e-72 275.0 244 61.5
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 6.2e-72 275.0 206 68.4
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.1e-71 274.2 210 65.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 1.8e-71 273.5 242 62.4
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 2.4e-71 273.1 209 64.6
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 5.2e-71 271.9 234 63.2
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 6.8e-71 271.6 206 66.5
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 2.0e-70 270.0 210 66.2
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 2.0e-70 270.0 249 57.8
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 7.6e-70 268.1 242 58.3
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.4e-69 265.0 248 60.1
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.4e-69 265.0 248 60.1
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.2e-67 260.8 199 64.8
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.1e-67 260.0 188 69.1
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 2.1e-67 260.0 240 61.2
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-67 258.1 230 59.6
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 7.8e-67 258.1 230 59.6
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 1.0e-66 257.7 234 58.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 1.3e-66 257.3 234 61.5
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.1e-65 254.2 230 59.1
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-65 254.2 230 59.1
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.5e-65 253.1 234 57.3
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.8e-64 249.6 239 56.5
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.8e-64 249.6 231 58.0
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 6.2e-64 248.4 209 61.7
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 1.1e-63 247.7 186 65.1
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.4e-63 246.5 202 60.4
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.0e-62 243.4 256 54.3
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.0e-62 243.4 256 54.3
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 4.4e-62 242.3 209 58.9
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 4.4e-62 242.3 209 58.9
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 9.9e-62 241.1 204 61.8
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.3e-61 240.7 232 53.9
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 1.3e-61 240.7 188 63.8
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 2.2e-61 240.0 200 60.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.8e-61 239.2 232 56.5
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 6.4e-61 238.4 247 53.0
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 4.2e-60 235.7 209 58.9
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.4e-60 235.3 257 51.8
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.1e-59 233.4 232 53.9
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.6e-59 232.3 207 59.9
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 7.9e-59 231.5 209 56.5
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.0e-58 231.1 232 52.6
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.3e-58 229.9 234 53.8
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 5.1e-58 228.8 209 56.9
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.1e-57 227.6 161 70.2
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 3.3e-57 226.1 232 51.7
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.6e-57 225.3 219 53.0
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.6e-57 225.3 219 53.0
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 5.6e-57 225.3 219 53.0
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 5.6e-57 225.3 219 53.0
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 1.3e-56 224.2 181 58.6
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.1e-56 223.4 183 63.9
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 2.1e-56 223.4 203 57.6
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 8.1e-56 221.5 203 56.2
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.8e-55 220.3 203 55.7
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 2.4e-55 219.9 203 56.2
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.4e-55 219.9 237 51.5
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 9.9e-54 214.5 209 55.5
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 1.3e-53 214.2 194 57.2
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 1.9e-52 210.3 183 60.1
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.1e-51 206.8 212 56.6
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 1.1e-49 201.1 199 51.8
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 2.1e-48 196.8 143 72.0
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.8e-48 196.4 197 52.8
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 8.1e-48 194.9 183 55.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 1.8e-47 193.7 169 62.1
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 4.0e-47 192.6 202 50.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.0e-47 192.6 202 50.0
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 1.3e-45 187.6 181 50.3
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 1.7e-45 187.2 236 45.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 6.5e-45 185.3 209 50.7
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 6.5e-45 185.3 209 50.7
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 1.1e-44 184.5 226 48.2
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 4.6e-43 179.1 209 48.8
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 2.5e-41 173.3 213 45.5
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 2.5e-41 173.3 213 46.9
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 2.8e-40 169.9 211 44.1
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 4.8e-40 169.1 211 43.6
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.1e-39 167.9 198 44.4
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 9.0e-39 164.9 194 43.3
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 9.0e-39 164.9 229 39.3
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 7.6e-38 161.8 192 43.8
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.0e-37 161.4 156 53.8
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.2e-36 156.4 206 42.7
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 6.1e-35 152.1 197 43.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.0e-34 151.4 128 62.5
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 1.5e-33 147.5 129 59.7
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.4e-26 124.4 199 40.7
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 6.7e-26 122.1 161 40.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.8e-24 116.7 161 39.1
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 6.5e-21 105.5 90 63.3
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.9e-20 104.0 76 71.1
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 2.5e-20 103.6 80 67.5
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 3.6e-19 99.8 90 55.6
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.7e-19 99.4 157 37.6
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.7e-18 95.5 69 72.5
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 1.0e-13 81.6 67 64.2
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 8.5e-13 78.6 63 60.3
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.1e-09 68.2 237 23.6
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 6.3e-08 62.4 41 68.3
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 1.6e-06 57.8 220 24.1


User provided reference genes

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