Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.9e-35 151.4 76 100.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 6.0e-17 90.5 61 78.7
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 6.0e-17 90.5 61 77.0
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.3e-16 88.6 60 73.3
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-16 87.4 61 73.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-16 87.4 61 73.8
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-16 87.4 61 73.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.1e-16 87.4 61 75.4
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 8.6e-16 86.7 61 73.8
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.1e-15 86.3 61 73.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.1e-15 86.3 61 73.8
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-15 86.3 60 75.0
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 1.1e-15 86.3 60 75.0
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 1.1e-15 86.3 61 73.8
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.1e-15 86.3 61 73.8
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.5e-15 85.9 61 73.8
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.5e-15 85.9 61 73.8
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.9e-15 85.5 61 72.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.5e-15 85.1 61 72.1
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 2.5e-15 85.1 61 72.1
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 2.5e-15 85.1 60 73.3
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 3.3e-15 84.7 61 72.1
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 3.3e-15 84.7 61 72.1
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.3e-15 84.7 60 73.3
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.3e-15 84.7 60 73.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 4.3e-15 84.3 61 70.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 4.3e-15 84.3 61 70.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.6e-15 84.0 61 70.5
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 5.6e-15 84.0 61 70.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 5.6e-15 84.0 61 70.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 5.6e-15 84.0 61 70.5
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 7.3e-15 83.6 61 68.9
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 7.3e-15 83.6 61 68.9
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 7.3e-15 83.6 61 72.1
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 9.5e-15 83.2 61 70.5
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 9.5e-15 83.2 61 70.5
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 9.5e-15 83.2 61 70.5
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 9.5e-15 83.2 61 70.5
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.2e-14 82.8 60 70.0
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.2e-14 82.8 61 70.5
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.2e-14 82.8 61 70.5
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 1.6e-14 82.4 61 68.9
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 1.6e-14 82.4 60 71.7
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.1e-14 82.0 61 68.9
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.1e-14 82.0 61 68.9
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.1e-14 82.0 61 68.9
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.1e-14 82.0 60 70.0
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 2.8e-14 81.6 61 67.2
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 2.8e-14 81.6 54 75.9
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.8e-14 81.6 61 68.9
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 2.8e-14 81.6 61 67.2
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.8e-14 81.6 60 68.3
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 3.6e-14 81.3 61 70.5
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.6e-14 81.3 61 70.5
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 3.6e-14 81.3 61 70.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.7e-14 80.9 61 68.9
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.7e-14 80.9 59 67.8
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 4.7e-14 80.9 61 68.9
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.7e-14 80.9 61 68.9
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 4.7e-14 80.9 61 65.6
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.7e-14 80.9 61 67.2
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 6.2e-14 80.5 73 58.9
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 6.2e-14 80.5 61 67.2
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 6.2e-14 80.5 60 66.7
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 8.1e-14 80.1 59 69.5
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 8.1e-14 80.1 73 58.9
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 8.1e-14 80.1 73 58.9
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.4e-13 79.3 61 67.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.4e-13 79.3 60 66.7
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.4e-13 79.3 63 66.7
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.8e-13 79.0 60 66.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.8e-13 79.0 54 70.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 1.8e-13 79.0 73 58.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.8e-13 79.0 60 65.0
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.1e-13 78.2 61 65.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.1e-13 78.2 61 67.2
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 4.0e-13 77.8 61 62.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 5.2e-13 77.4 54 72.2
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 5.2e-13 77.4 61 62.3
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 5.2e-13 77.4 61 60.7
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.2e-13 77.4 54 68.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 6.8e-13 77.0 61 65.6
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.2e-12 76.3 60 65.0
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-12 75.9 61 62.3
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 1.5e-12 75.9 61 62.3
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 1.5e-12 75.9 61 62.3
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 1.5e-12 75.9 61 62.3
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.5e-12 75.9 52 73.1
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-12 75.9 58 67.2
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.5e-12 75.9 61 63.9
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.0e-12 75.5 61 60.7
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 2.0e-12 75.5 61 60.7
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.0e-12 75.5 61 62.3
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.0e-12 75.5 62 66.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.6e-12 75.1 60 61.7
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 2.6e-12 75.1 60 61.7
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 2.6e-12 75.1 61 63.9
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 60.7
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 60.7
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 60.7
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 60.7
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 63.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 65.6
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.4e-12 74.7 61 65.6
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.4e-12 74.7 59 62.7
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.4e-12 74.7 59 62.7
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.4e-12 74.3 61 65.6
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 5.8e-12 73.9 54 64.8
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 5.8e-12 73.9 60 60.0
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.6e-12 73.6 61 63.9
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 7.6e-12 73.6 59 62.7
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.7e-11 72.4 61 60.7
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 2.2e-11 72.0 60 58.3
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 2.2e-11 72.0 54 66.7
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 3.8e-11 71.2 60 60.0
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 6.4e-11 70.5 60 60.0
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 6.4e-11 70.5 59 61.0
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 1.9e-10 68.9 60 61.7
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.2e-10 68.2 89 48.3
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 3.2e-10 68.2 61 55.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.2e-09 66.2 60 60.0
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.2e-09 66.2 65 55.4
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 1.2e-09 66.2 85 48.2
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.2e-09 66.2 101 44.6
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.6e-09 65.9 63 55.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.6e-09 65.9 63 55.6
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.6e-09 64.3 73 47.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 6.0e-09 63.9 106 40.6
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 7.8e-09 63.5 63 54.0
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.0e-08 63.2 60 56.7
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 2.3e-08 62.0 60 55.0
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.3e-07 57.0 65 52.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 7.3e-07 57.0 65 52.3
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.2e-06 56.2 67 43.3
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 3.6e-06 54.7 38 71.1
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 4.7e-06 54.3 35 74.3


User provided reference genes

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