Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03228 Eucalyptus grandis HOM05D007150 ORTHO05D008994 7.7e-125 451.1 337 100.0
PGR042G2178 Punica granatum HOM05D007150 ORTHO05D008994 2.1e-53 213.8 194 76.8
CANSAT25G0571 Cannabis sativa HOM05D007150 ORTHO05D008994 1.3e-50 204.5 195 66.2
Cc02_g19160 Coffea canephora HOM05D007150 ORTHO05D008994 1.6e-50 204.1 361 48.8
ClCG02G006250 Citrullus lanatus HOM05D007150 ORTHO05D008994 6.3e-50 202.2 360 57.5
MELO3C018480.2 Cucumis melo HOM05D007150 ORTHO05D008994 1.1e-49 201.4 385 57.7
Duzib052G1025 Durio zibethinus HOM05D007150 ORTHO05D008994 1.2e-48 198.0 191 56.0
RcHm_v2.0_Chr6g0255611 Rosa chinensis HOM05D007150 ORTHO05D008994 1.2e-48 198.0 374 56.4
FvH4_2g05350 Fragaria vesca HOM05D007150 ORTHO05D008994 2.0e-48 197.2 374 55.1
FAN24G2604 Fragaria x ananassa HOM05D007150 ORTHO05D008994 3.4e-48 196.4 369 54.7
FAN20G1091 Fragaria x ananassa HOM05D007150 ORTHO05D008994 7.6e-48 195.3 374 55.1
QL11p034059 Quercus lobata HOM05D007150 ORTHO05D008994 1.3e-47 194.5 363 57.9
FAN15G2804 Fragaria x ananassa HOM05D007150 ORTHO05D008994 1.7e-47 194.1 369 53.7
Lj5g0008538 Lotus japonicus HOM05D007150 ORTHO05D008994 1.7e-47 194.1 192 52.6
COL.COLO4_32606 Corchorus olitorius HOM05D007150 ORTHO05D008994 6.5e-47 192.2 368 56.8
CiPaw.05G010400 Carya illinoinensis HOM05D007150 ORTHO05D008994 1.9e-46 190.7 366 47.5
Sabra16G0189500 Salix brachista HOM05D007150 ORTHO05D008994 4.2e-46 189.5 365 49.0
Duzib132G0401 Durio zibethinus HOM05D007150 ORTHO05D008994 1.2e-45 188.0 194 72.2
Haze_10159 Corylus avellana HOM05D007150 ORTHO05D008994 1.6e-45 187.6 191 60.7
Thecc.02G106600 Theobroma cacao HOM05D007150 ORTHO05D008994 1.6e-45 187.6 368 56.0
Manes.07G069300 Manihot esculenta HOM05D007150 ORTHO05D008994 2.1e-45 187.2 190 56.8
Lj9P321T37 Lonicera japonica HOM05D007150 ORTHO05D008994 4.6e-45 186.0 365 54.5
Potri.009G097100 Populus trichocarpa HOM05D007150 ORTHO05D008994 4.6e-45 186.0 368 49.7
Cfa004568 Carpinus fangiana HOM05D007150 ORTHO05D008994 1.3e-44 184.5 191 54.5
Glyma.10G263200 Glycine max HOM05D007150 ORTHO05D008994 1.3e-44 184.5 368 44.8
Sabra09G0074700 Salix brachista HOM05D007150 ORTHO05D008994 1.3e-44 184.5 368 53.0
Glyma.20G127300 Glycine max HOM05D007150 ORTHO05D008994 2.3e-44 183.7 370 45.4
Potri.001G301400 Populus trichocarpa HOM05D007150 ORTHO05D008994 3.0e-44 183.3 368 50.0
Gohir.D01G007950 Gossypium hirsutum HOM05D007150 ORTHO05D008994 8.7e-44 181.8 195 65.1
MBI16_g31755_MAGBIO Magnolia biondii HOM05D007150 ORTHO05D008994 8.7e-44 181.8 363 46.0
Rhsim11G0160700 Rhododendron simsii HOM05D007150 ORTHO05D008994 1.5e-43 181.0 190 56.3
Aa31LG8G13190 Aethionema arabicum HOM05D007150 ORTHO05D008994 1.9e-43 180.6 370 50.8
Gorai.013G046700 Gossypium raimondii HOM05D007150 ORTHO05D008994 2.5e-43 180.3 194 70.6
VMungo0720G0738 Vigna mungo HOM05D007150 ORTHO05D008994 2.5e-43 180.3 369 44.7
Gorai.002G009100 Gossypium raimondii HOM05D007150 ORTHO05D008994 3.3e-43 179.9 191 65.4
AL3G47080 Arabidopsis lyrata HOM05D007150 ORTHO05D008994 4.3e-43 179.5 367 54.2
Lj5P213T31 Lonicera japonica HOM05D007150 ORTHO05D008994 4.3e-43 179.5 195 66.7
Gohir.A13G043300 Gossypium hirsutum HOM05D007150 ORTHO05D008994 7.4e-43 178.7 194 70.6
Psat6g219760 Pisum sativum HOM05D007150 ORTHO05D008994 9.7e-43 178.3 187 48.7
Medtr1g107500 Medicago truncatula HOM05D007150 ORTHO05D008994 1.3e-42 177.9 191 48.2
MSTRG.16718 Avicennia marina HOM05D007150 ORTHO05D008994 3.7e-42 176.4 195 50.3
Gohir.D13G041800 Gossypium hirsutum HOM05D007150 ORTHO05D008994 3.7e-42 176.4 194 69.6
Hma1.2p1_0796F.1_g219100 Hydrangea macrophylla HOM05D007150 ORTHO05D008994 3.7e-42 176.4 365 51.5
Nn1g04720 Nelumbo nucifera HOM05D007150 ORTHO05D008994 8.2e-42 175.3 351 47.3
Phvul.007G038700 Phaseolus vulgaris HOM05D007150 ORTHO05D008994 1.1e-41 174.9 199 47.7
CAN.G1231.13 Capsicum annuum HOM05D007150 ORTHO05D008994 1.4e-41 174.5 195 48.2
Solyc01g107670.2 Solanum lycopersicum HOM05D007150 ORTHO05D008994 1.4e-41 174.5 195 64.1
Sopen01g049850 Solanum pennellii HOM05D007150 ORTHO05D008994 1.4e-41 174.5 195 64.1
SGA_v2.0_scaffold32G13043 Striga asiatica HOM05D007150 ORTHO05D008994 1.8e-41 174.1 194 47.9
THA.LOC104807835 Tarenaya hassleriana HOM05D007150 ORTHO05D008994 1.8e-41 174.1 369 55.3
AT2G15320 Arabidopsis thaliana HOM05D007150 ORTHO05D008994 2.4e-41 173.7 367 53.7
Sed0024536 Sechium edule HOM05D007150 ORTHO05D008994 2.4e-41 173.7 190 66.8
Peaxi162Scf00016g02223 Petunia axillaris HOM05D007150 ORTHO05D008994 4.1e-41 172.9 310 55.8
Dinv15755 Davidia involucrata HOM05D007150 ORTHO05D008994 5.3e-41 172.6 193 64.2
Nitab4.5_0002815g0080 Nicotiana tabacum HOM05D007150 ORTHO05D008994 6.9e-41 172.2 195 48.7
CARHR105700 Cardamine hirsuta HOM05D007150 ORTHO05D008994 1.5e-40 171.0 367 53.7
Migut.B00379 Erythranthe guttata HOM05D007150 ORTHO05D008994 1.5e-40 171.0 199 51.8
Ca_11085_v3 Cicer arietinum L. HOM05D007150 ORTHO05D008994 2.0e-40 170.6 362 43.4
Gohir.A01G007800 Gossypium hirsutum HOM05D007150 ORTHO05D008994 3.4e-40 169.9 191 61.8
Nitab4.5_0005392g0010 Nicotiana tabacum HOM05D007150 ORTHO05D008994 3.4e-40 169.9 195 54.4
Prupe.8G133500 Prunus persica HOM05D007150 ORTHO05D008994 3.4e-40 169.9 364 48.1
BcaB07g31791 Brassica carinata HOM05D007150 ORTHO05D008994 7.7e-40 168.7 367 53.7
TAR628G0324 Trochodendron aralioides HOM05D007150 ORTHO05D008994 1.0e-39 168.3 189 66.7
Atru.chr5.2575 Acer truncatum HOM05D007150 ORTHO05D008994 1.3e-39 167.9 361 52.9
PGSC0003DMG400025867 Solanum tuberosum HOM05D007150 ORTHO05D008994 2.2e-39 167.2 195 63.6
Carub.0003s2921 Capsella rubella HOM05D007150 ORTHO05D008994 2.9e-39 166.8 189 65.6
Lalb_Chr21g0308401 Lupinus albus HOM05D007150 ORTHO05D008994 3.8e-39 166.4 360 53.3
SpUn0368_0010 Schrenkiella parvula HOM05D007150 ORTHO05D008994 3.8e-39 166.4 367 53.1
GSVIVG01003169001 Vitis vinifera HOM05D007150 ORTHO05D008994 1.1e-38 164.9 187 66.3
A09p10710 Brassica napus HOM05D007150 ORTHO05D008994 1.9e-38 164.1 370 53.8
BraA09t36716Z Brassica rapa HOM05D007150 ORTHO05D008994 1.9e-38 164.1 370 53.8
Thhalv10022724m.g Eutrema salsugineum HOM05D007150 ORTHO05D008994 1.9e-38 164.1 367 52.9
MD05G1087700 Malus domestica HOM05D007150 ORTHO05D008994 2.5e-38 163.7 361 52.6
CSS0037176 Camellia sinensis var. sinensis HOM05D007150 ORTHO05D008994 2.7e-37 160.2 369 43.1
Oeu013742.1 Olea europaea HOM05D007150 ORTHO05D008994 1.4e-36 157.9 189 67.2
DCAR_021995 Daucus carota HOM05D007150 ORTHO05D008994 2.0e-35 154.1 189 48.1
Lsat_1_v5_gn_5_114620 Lactuca sativa HOM05D007150 ORTHO05D008994 2.5e-35 153.7 357 46.8
HanXRQChr16g0513181 Helianthus annuus HOM05D007150 ORTHO05D008994 4.3e-35 152.9 191 44.5
Hma1.2p1_0474F.1_g160660 Hydrangea macrophylla HOM05D007150 ORTHO05D008994 2.8e-34 150.2 190 62.1
Cpa.g.sc106.82 Carica papaya HOM05D007150 ORTHO05D008994 1.8e-33 147.5 195 62.1
BcaC04g23049 Brassica carinata HOM05D007150 ORTHO05D008994 2.4e-33 147.1 369 52.3
TWI75G0581 Tripterygium wilfordii HOM05D007150 ORTHO05D008994 3.1e-33 146.7 366 45.9
TPR.G27772 Trifolium pratense HOM05D007150 ORTHO05D008994 9.1e-33 145.2 164 47.6
BolC9t54160H Brassica oleracea HOM05D007150 ORTHO05D008994 2.0e-32 144.1 369 52.3
HanXRQChr10g0301561 Helianthus annuus HOM05D007150 ORTHO05D008994 2.0e-32 144.1 357 43.7
C09p12710 Brassica napus HOM05D007150 ORTHO05D008994 1.0e-31 141.7 369 51.8
CDE02G3472 Ceratophyllum demersum HOM05D007150 ORTHO05D008994 1.0e-31 141.7 188 61.7
Nn5g30403 Nelumbo nucifera HOM05D007150 ORTHO05D008994 1.4e-30 137.9 188 44.1
Aqoxy5G01157 Aquilegia oxysepala HOM05D007150 ORTHO05D008994 1.9e-30 137.5 184 45.1
Sc08g0001480 Simmondsia chinensis HOM05D007150 ORTHO05D008994 2.5e-30 137.1 192 40.1
Lsat_1_v5_gn_9_111460 Lactuca sativa HOM05D007150 ORTHO05D008994 3.0e-28 130.2 363 49.3
CsaV3_7G008270 Cucumis sativus L. HOM05D007150 ORTHO05D008994 1.1e-27 128.3 360 42.8
SalBow6G1098 Salvia bowleyana HOM05D007150 ORTHO05D008994 7.4e-27 125.6 167 50.3
HanXRQChr10g0301551 Helianthus annuus HOM05D007150 ORTHO05D008994 9.7e-27 125.2 190 35.3
EL10Ac9g22300 Beta vulgaris HOM05D007150 ORTHO05D008994 1.7e-26 124.4 193 52.8
Ciclev10030023m.g Citrus clementina HOM05D007150 ORTHO05D008994 2.0e-24 117.5 192 52.6
AUR62013256 Chenopodium quinoa HOM05D007150 ORTHO05D008994 7.7e-24 115.5 252 55.2
AUR62044359 Chenopodium quinoa HOM05D007150 ORTHO05D008994 7.7e-24 115.5 252 55.2
AUR62010277 Chenopodium quinoa HOM05D007150 ORTHO05D008994 1.2e-21 108.2 254 50.8
ATR0724G003 Amborella trichopoda HOM05D007150 ORTHO05D008994 6.1e-21 105.9 187 35.8
HanXRQChr09g0250571 Helianthus annuus HOM05D007150 ORTHO05D008994 1.4e-20 104.8 190 42.6
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 5.2e-20 102.8 110 50.9
SEGI_19656 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 8.8e-20 102.1 200 35.0
HanXRQChr03g0070241 Helianthus annuus HOM05D007150 ORTHO05D008994 1.5e-19 101.3 184 38.0
TPR.G19060 Trifolium pratense HOM05D007150 ORTHO05D008994 2.0e-19 100.9 77 61.0
SEGI_39952 Sequoiadendron giganteum HOM05D004495 ORTHO05D005361 1.8e-17 94.4 197 33.0
HanXRQChr10g0301541 Helianthus annuus HOM05D007150 ORTHO05D008994 7.0e-17 92.4 359 37.6
HanXRQChr09g0260791 Helianthus annuus HOM05D004495 ORTHO05D005361 6.5e-15 85.9 319 37.0
ECA232G3045 Erigeron canadensis HOM05D004495 ORTHO05D005361 2.1e-13 80.9 198 32.3
Lj4g0005839 Lotus japonicus HOM05D004495 ORTHO05D005361 8.8e-12 75.5 110 37.3
Sabra07G0014100 Salix brachista HOM05D004495 ORTHO05D005361 7.5e-11 72.4 199 28.6
Glyma.02G051300 Glycine max HOM05D004495 ORTHO05D005361 9.8e-11 72.0 113 37.2
HanXRQChr11g0325661 Helianthus annuus HOM05D004495 ORTHO05D005361 4.8e-10 69.7 197 29.9
Potri.005G117800 Populus trichocarpa HOM05D004495 ORTHO05D005361 1.4e-09 68.2 108 38.9
Potri.007G016800 Populus trichocarpa HOM05D004495 ORTHO05D005361 1.4e-09 68.2 107 37.4
TPR.G2403 Trifolium pratense HOM05D004495 ORTHO05D005361 3.1e-09 67.0 112 35.7
EL10As8g23864 Beta vulgaris HOM05D004495 ORTHO05D005361 4.1e-09 66.6 103 35.0
CiPaw.07G055000 Carya illinoinensis HOM05D004495 ORTHO05D005361 5.4e-09 66.2 192 32.8
Glyma.09G087300 Glycine max HOM05D007150 ORTHO05D008994 5.4e-09 66.2 73 49.3
SEGI_31027 Sequoiadendron giganteum HOM05D004495 ORTHO05D008994 2.0e-08 64.3 188 27.7
Duzib116G0785 Durio zibethinus HOM05D004495 ORTHO05D005361 7.7e-08 62.4 100 36.0
Sc16g0002410 Simmondsia chinensis HOM05D004495 ORTHO05D005361 1.0e-07 62.0 108 34.3
VMungo1215G0664 Vigna mungo HOM05D004495 ORTHO05D005361 1.7e-07 61.2 82 36.6
Lalb_Chr09g0322011 Lupinus albus HOM05D004495 ORTHO05D005361 1.1e-06 58.5 82 36.6
PSO210G4027 Papaver somniferum HOM05D007150 ORTHO05D008994 1.1e-06 58.5 46 56.5
Medtr5g021290 Medicago truncatula HOM05D004495 ORTHO05D005361 1.5e-06 58.2 94 37.2
Lalb_Chr16g0377651 Lupinus albus HOM05D004495 ORTHO05D005361 1.9e-06 57.8 82 37.8
Phvul.002G112100 Phaseolus vulgaris HOM05D004495 ORTHO05D005361 1.9e-06 57.8 68 38.2
PGR031G1664 Punica granatum HOM05D000053 ORTHO05D000448 3.2e-06 57.0 107 31.8
Ca_24891_v3 Cicer arietinum L. HOM05D004495 ORTHO05D005361 4.2e-06 56.6 69 37.7
Glyma.11G073800 Glycine max HOM05D004495 ORTHO05D005361 4.2e-06 56.6 82 35.4
PSO170G4206 Papaver somniferum HOM05D007150 ORTHO05D008994 4.2e-06 56.6 46 54.3
Glyma.01G169500 Glycine max HOM05D004495 ORTHO05D005361 5.5e-06 56.2 81 37.0
Zm00001eb186170 Zea mays HOM05D004495 ORTHO05D005361 5.5e-06 56.2 81 40.7
SMO347G0241 Selaginella moellendorffii HOM05D004495 ORTHO05D005361 7.2e-06 55.8 68 41.2
MSTRG.7419 Avicennia marina HOM05D000094 ORTHO05D005974 9.5e-06 55.5 106 31.1
Cfa017122 Carpinus fangiana HOM05D000053 ORTHO05D000448 9.5e-06 55.5 114 33.3
Cre16.g682550 Chlamydomonas reinhardtii HOM05D013150 ORTHO05D025006 9.5e-06 55.5 212 28.3
Thecc.01G024400 Theobroma cacao HOM05D004495 ORTHO05D005361 9.5e-06 55.5 91 35.2


User provided reference genes

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