Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 1.1e-46 189.9 119 100.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 4.6e-16 88.2 117 63.2
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 6.1e-16 87.8 118 51.7
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 6.1e-16 87.8 100 53.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 1.0e-15 87.0 119 52.9
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 1.0e-15 87.0 99 53.5
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 1.1e-14 83.6 100 52.0
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 1.5e-14 83.2 100 51.0
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 3.3e-14 82.0 119 49.6
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 4.3e-14 81.6 100 53.0
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 7.4e-14 80.9 122 46.7
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 7.4e-14 80.9 117 44.4
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 9.7e-14 80.5 100 50.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 9.7e-14 80.5 101 48.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.3e-13 80.1 100 51.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 1.7e-13 79.7 116 47.4
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.7e-13 79.7 96 50.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 6.3e-13 77.8 98 52.0
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 6.3e-13 77.8 100 50.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 8.2e-13 77.4 120 47.5
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 1.1e-12 77.0 100 52.0
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.1e-12 77.0 100 51.0
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 1.4e-12 76.6 100 50.0
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 1.8e-12 76.3 115 45.2
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.8e-12 76.3 101 49.5
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.4e-12 75.9 101 48.5
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 2.4e-12 75.9 101 48.5
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.1e-12 75.5 125 44.8
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 4.1e-12 75.1 99 47.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 4.1e-12 75.1 117 44.4
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 4.1e-12 75.1 115 45.2
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 6.9e-12 74.3 101 45.5
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 9.1e-12 73.9 108 47.2
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.1e-12 73.9 100 47.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.1e-12 73.9 100 47.0
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 9.1e-12 73.9 101 45.5
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.2e-11 73.6 101 44.6
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 1.2e-11 73.6 101 44.6
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.0e-11 72.8 100 51.0
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.4e-11 72.0 103 47.6
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 3.4e-11 72.0 122 45.9
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 4.5e-11 71.6 118 45.8
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 5.9e-11 71.2 99 46.5
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 7.7e-11 70.9 93 49.5
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 1.0e-10 70.5 115 46.1
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 1.3e-10 70.1 117 41.9
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.7e-10 69.7 100 47.0
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 2.2e-10 69.3 121 45.5
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 2.2e-10 69.3 107 43.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.2e-10 69.3 102 45.1
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 2.9e-10 68.9 115 47.8
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 2.9e-10 68.9 100 49.0
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 3.8e-10 68.6 118 41.5
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 3.8e-10 68.6 117 42.7
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.8e-10 68.6 115 44.3
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 5.0e-10 68.2 119 44.5
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 5.0e-10 68.2 109 45.9
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 5.0e-10 68.2 113 44.2
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 5.0e-10 68.2 108 43.5
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.0e-10 68.2 100 47.0
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 6.5e-10 67.8 102 45.1
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 6.5e-10 67.8 102 44.1
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 8.5e-10 67.4 97 48.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 8.5e-10 67.4 97 48.5
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 8.5e-10 67.4 100 48.0
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 8.5e-10 67.4 101 45.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 1.1e-09 67.0 110 45.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 1.1e-09 67.0 117 43.6
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.1e-09 67.0 106 46.2
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-09 66.6 102 42.2
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.4e-09 66.6 100 45.0
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 2.5e-09 65.9 102 44.1
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 2.5e-09 65.9 97 47.4
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.5e-09 65.9 118 42.4
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 3.2e-09 65.5 99 45.5
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 3.2e-09 65.5 96 44.8
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 4.2e-09 65.1 97 47.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 4.2e-09 65.1 99 45.5
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 5.5e-09 64.7 104 44.2
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 5.5e-09 64.7 98 46.9
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 5.5e-09 64.7 100 47.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 5.5e-09 64.7 102 45.1
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 5.5e-09 64.7 97 45.4
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.2e-09 64.3 101 44.6
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 7.2e-09 64.3 96 51.0
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 9.4e-09 63.9 120 42.5
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 9.4e-09 63.9 77 46.8
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 9.4e-09 63.9 103 45.6
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 9.4e-09 63.9 100 46.0
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 1.2e-08 63.5 94 46.8
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.2e-08 63.5 94 47.9
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 1.2e-08 63.5 96 45.8
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 1.2e-08 63.5 118 41.5
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 1.6e-08 63.2 101 45.5
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 2.1e-08 62.8 103 42.7
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 2.1e-08 62.8 103 44.7
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.1e-08 62.8 94 46.8
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 2.1e-08 62.8 102 43.1
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.7e-08 62.4 99 41.4
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 2.7e-08 62.4 101 43.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 2.7e-08 62.4 99 44.4
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 3.6e-08 62.0 96 43.8
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 3.6e-08 62.0 96 43.8
BraA07t28731Z Brassica rapa HOM05D003940 ORTHO05D004461 4.7e-08 61.6 104 44.2
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 4.7e-08 61.6 100 42.0
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 4.7e-08 61.6 110 44.5
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 4.7e-08 61.6 115 41.7
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 6.1e-08 61.2 101 44.6
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.1e-08 61.2 102 43.1
A07p09330 Brassica napus HOM05D003940 ORTHO05D004461 7.9e-08 60.8 104 44.2
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.9e-08 60.8 96 42.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.0e-07 60.5 98 43.9
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 1.0e-07 60.5 97 44.3
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-07 60.1 101 42.6
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.4e-07 60.1 98 44.9
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 1.4e-07 60.1 96 43.8
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.4e-07 60.1 93 43.0
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 1.8e-07 59.7 89 43.8
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 2.3e-07 59.3 98 40.8
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 2.3e-07 59.3 95 42.1
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 2.3e-07 59.3 93 43.0
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 2.3e-07 59.3 108 42.6
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 3.0e-07 58.9 89 43.8
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 3.0e-07 58.9 104 42.3
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 3.9e-07 58.5 66 53.0
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 3.9e-07 58.5 66 53.0
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 3.9e-07 58.5 66 53.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 3.9e-07 58.5 100 40.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 3.9e-07 58.5 116 40.5
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 3.9e-07 58.5 110 40.9
PSO210G0601 Papaver somniferum HOM05D003940 ORTHO05D004461 5.1e-07 58.2 112 42.0
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 8.8e-07 57.4 101 42.6
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 1.1e-06 57.0 110 39.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 1.1e-06 57.0 109 42.2
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.5e-06 56.6 97 41.2
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.5e-06 56.6 109 40.4
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 1.5e-06 56.6 104 39.4
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 1.5e-06 56.6 99 42.4
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 2.0e-06 56.2 100 42.0
FvH4_7g33480 Fragaria vesca HOM05D003940 ORTHO05D004461 2.0e-06 56.2 74 47.3
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 2.6e-06 55.8 90 43.3
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 3.3e-06 55.5 76 47.4
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 4.4e-06 55.1 109 39.4
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 4.4e-06 55.1 99 42.4
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-06 54.7 97 42.3
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 5.7e-06 54.7 97 42.3
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 5.7e-06 54.7 101 41.6
A03p43180 Brassica napus HOM05D003940 ORTHO05D004461 7.4e-06 54.3 100 40.0
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 7.4e-06 54.3 109 40.4
FAN26G1611 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.4e-06 54.3 83 44.6
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 9.7e-06 53.9 117 35.9


User provided reference genes

Program Settings