Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 0.0e+00 1756.9 911 100.0
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.4e-282 975.7 940 58.5
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 8.4e-275 950.7 1004 56.0
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 6.0e-273 944.5 977 56.5
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.3e-272 942.6 971 56.4
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 3.0e-272 942.2 1005 56.1
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 1.6e-270 936.4 946 57.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 9.0e-269 930.6 972 55.8
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 4.5e-268 928.3 976 56.4
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.9e-266 922.9 971 56.1
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 4.2e-266 921.8 959 57.1
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 7.1e-266 921.0 945 56.4
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 7.1e-266 921.0 943 57.2
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.6e-265 919.8 1018 53.9
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.3e-264 916.0 990 54.1
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 3.0e-264 915.6 960 55.1
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.5e-263 912.5 980 56.2
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 8.2e-262 907.5 959 56.4
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.1e-261 907.1 939 56.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.4e-261 906.0 929 56.2
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.0e-261 904.0 938 56.5
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 9.0e-261 904.0 943 56.3
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 4.9e-259 898.3 950 55.2
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.1e-258 897.1 954 54.3
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 7.1e-258 894.4 944 55.6
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.2e-257 893.6 897 56.0
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 1.8e-256 889.8 939 54.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 1.8e-256 889.8 979 53.8
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 6.7e-256 887.9 926 55.9
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 4.3e-255 885.2 964 54.3
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 9.7e-255 884.0 950 54.8
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 4.1e-253 878.6 954 54.1
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.0e-252 876.3 838 58.1
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.4e-252 875.5 965 53.8
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 9.3e-250 867.5 990 52.6
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 9.3e-250 867.5 859 56.9
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.7e-249 865.9 992 52.1
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 3.6e-249 865.5 987 51.5
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.0e-248 864.0 1009 51.8
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 1.4e-248 863.6 987 52.0
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.3e-248 862.8 969 52.9
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.5e-247 860.1 942 53.3
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.5e-247 860.1 939 54.5
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-247 860.1 982 53.0
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.5e-247 860.1 698 64.5
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 4.3e-247 858.6 964 53.8
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 9.7e-247 857.4 1043 49.6
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 6.3e-246 854.7 996 49.8
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.8e-245 853.2 992 50.5
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 4.1e-245 852.0 943 52.3
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 5.3e-245 851.7 959 53.8
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 5.0e-243 845.1 996 50.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.0e-240 837.4 977 51.2
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.5e-239 833.6 961 52.3
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 3.3e-239 832.4 960 52.3
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 1.7e-238 830.1 1009 48.6
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.7e-238 830.1 952 51.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 6.3e-238 828.2 963 52.3
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 8.2e-238 827.8 922 54.1
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 3.1e-237 825.9 975 50.3
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 4.5e-236 822.0 943 51.3
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 4.7e-233 812.0 1013 51.0
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.1e-229 800.8 1013 50.5
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.4e-229 799.7 903 53.0
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.1e-229 798.9 677 61.0
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.0e-228 796.6 1074 46.6
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.3e-227 793.9 958 50.0
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 1.7e-227 793.5 984 47.9
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.2e-225 787.3 995 47.8
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.7e-225 785.4 761 55.6
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.3e-224 783.1 957 50.4
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 6.7e-224 781.6 1021 46.3
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 8.8e-224 781.2 951 50.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 1.5e-223 780.4 696 58.3
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 2.6e-223 779.6 954 50.7
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 4.4e-223 778.9 878 51.9
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 3.7e-222 775.8 928 51.8
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 6.3e-222 775.0 1014 48.0
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 2.4e-221 773.1 921 49.3
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 2.4e-221 773.1 667 60.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 4.1e-221 772.3 691 58.8
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 5.3e-221 771.9 939 49.6
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.0e-219 767.7 672 59.4
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-219 766.9 984 47.1
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 2.2e-219 766.5 875 52.2
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 6.5e-219 765.0 949 49.7
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 1.9e-218 763.5 883 51.3
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 7.2e-218 761.5 674 59.2
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 1.6e-217 760.4 952 49.6
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 2.3e-216 756.5 990 48.2
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 3.0e-216 756.1 952 48.2
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 6.8e-216 755.0 953 48.8
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.3e-214 750.7 967 48.3
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 1.8e-213 746.9 752 54.8
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 7.0e-213 745.0 721 57.0
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 1.6e-212 743.8 1006 48.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 5.9e-212 741.9 929 48.8
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 5.0e-211 738.8 938 47.5
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 4.2e-210 735.7 976 47.8
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 6.1e-209 731.9 684 57.7
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 8.0e-209 731.5 946 47.7
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 5.9e-204 715.3 929 47.9
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 3.8e-203 712.6 927 48.5
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.9e-202 710.3 928 47.4
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 3.6e-201 706.1 951 47.1
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.7e-198 697.2 876 47.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 3.7e-198 696.0 691 53.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 4.9e-198 695.7 948 46.3
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.3e-198 694.9 919 47.2
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 2.3e-195 686.8 729 53.1
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 4.0e-192 676.0 699 53.1
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.2e-190 670.2 689 52.7
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 4.9e-190 669.1 939 44.4
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.8e-172 608.6 730 48.2
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 7.3e-170 602.1 732 47.8
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 8.4e-158 562.0 716 45.0
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 5.8e-151 539.3 689 45.7
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 3.9e-147 526.6 857 41.2
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 3.4e-135 486.9 713 47.4
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 4.2e-133 479.9 664 42.6
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 5.2e-107 393.3 501 41.1
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-101 375.6 615 35.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.5e-101 375.2 793 33.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.2e-100 372.1 308 59.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.4e-90 337.0 456 41.0
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.6e-34 151.8 115 60.9
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.4e-32 146.0 115 60.0
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 9.6e-29 133.3 376 27.9
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 8.4e-25 120.2 190 40.5
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.2e-24 117.9 169 39.6
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.5e-21 108.6 333 36.6
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 5.7e-13 80.9 101 45.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-11 76.6 101 45.5
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 4.1e-11 74.7 147 35.4
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 5.3e-11 74.3 147 35.4
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-10 73.2 80 52.5
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 6.1e-07 60.8 55 56.4


User provided reference genes

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