Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 9.9e-89 330.1 168 100.0
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 2.4e-74 282.3 157 86.6
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.7e-72 276.2 163 82.8
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.9e-72 275.4 163 82.8
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 8.4e-72 273.9 160 83.8
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 8.4e-72 273.9 160 83.8
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.9e-71 272.7 155 85.2
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 2.5e-71 272.3 157 82.8
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 4.2e-71 271.6 163 82.8
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 4.2e-71 271.6 163 82.2
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 1.2e-70 270.0 163 81.0
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 1.6e-70 269.6 158 82.9
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 2.1e-70 269.2 162 81.5
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 2.7e-70 268.9 157 84.7
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.7e-70 268.9 158 81.6
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 3.5e-70 268.5 160 81.2
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 7.9e-70 267.3 160 81.2
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 7.9e-70 267.3 160 81.2
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 1.3e-69 266.5 160 84.4
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 1.3e-69 266.5 154 82.5
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.0e-69 265.4 156 84.0
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 6.7e-69 264.2 161 82.0
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 8.7e-69 263.8 160 81.9
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 8.7e-69 263.8 160 82.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 1.1e-68 263.5 165 76.4
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.9e-68 262.7 162 77.8
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.5e-68 262.3 160 79.4
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 3.3e-68 261.9 154 82.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 5.7e-68 261.2 153 83.7
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 9.6e-68 260.4 159 79.9
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.1e-67 259.2 160 81.2
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 2.8e-67 258.8 167 77.2
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 6.3e-67 257.7 160 78.1
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 8.2e-67 257.3 146 85.6
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 8.2e-67 257.3 159 78.6
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.8e-66 256.1 161 77.6
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 1.8e-66 256.1 154 81.8
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 2.4e-66 255.8 170 74.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 2.4e-66 255.8 150 80.0
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.4e-66 255.8 160 77.5
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.1e-66 255.0 161 81.4
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 4.1e-66 255.0 165 75.8
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 9.0e-66 253.8 165 75.8
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 9.0e-66 253.8 161 77.6
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 9.0e-66 253.8 165 74.5
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 9.0e-66 253.8 160 76.2
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 9.0e-66 253.8 157 79.6
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 1.2e-65 253.4 160 76.9
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.5e-65 253.1 154 78.6
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.0e-65 252.7 161 80.1
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 2.0e-65 252.7 163 77.3
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.0e-65 252.7 155 79.4
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 2.0e-65 252.7 155 79.4
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.9e-65 251.1 158 79.1
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 1.0e-64 250.4 152 82.2
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.0e-64 250.4 157 76.4
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 155 76.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 155 76.8
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 155 77.4
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.7e-64 249.6 160 76.2
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.7e-64 249.6 154 78.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.7e-64 249.6 153 81.0
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.9e-64 248.8 162 75.9
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 5.0e-64 248.1 160 75.0
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 8.4e-64 247.3 152 81.6
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 1.4e-63 246.5 146 80.1
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 2.5e-63 245.7 149 78.5
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 2.5e-63 245.7 158 75.3
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 2.5e-63 245.7 146 82.2
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.5e-63 244.6 163 75.5
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 5.5e-63 244.6 163 75.5
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 9.3e-63 243.8 186 69.4
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 9.3e-63 243.8 160 75.6
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 6.1e-62 241.1 163 74.2
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 6.1e-62 241.1 163 74.2
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.1e-62 241.1 152 77.0
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 7.9e-62 240.7 163 73.6
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.0e-61 240.4 163 73.6
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 1.0e-61 240.4 163 73.0
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 1.3e-61 240.0 160 73.8
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.3e-61 240.0 148 76.4
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 1.3e-61 240.0 163 73.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.8e-61 239.6 163 73.0
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.8e-61 239.6 163 73.0
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.8e-61 239.6 163 73.6
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.0e-61 238.8 152 78.9
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.9e-61 238.4 163 73.6
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 8.7e-61 237.3 156 73.1
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 8.7e-61 237.3 163 72.4
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.9e-60 236.1 161 77.0
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 1.3e-59 233.4 152 75.0
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.3e-59 233.4 201 61.2
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 2.2e-59 232.6 152 75.7
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 3.1e-58 228.8 160 73.1
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 7.2e-55 217.6 176 64.2
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 1.4e-53 213.4 168 65.5
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.3e-48 196.8 161 59.0
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.4e-45 186.8 122 76.2
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.8e-45 186.4 152 65.1
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 2.0e-44 183.0 116 79.3
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 4.8e-43 178.3 150 58.0
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.8e-42 176.4 92 90.2
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.0e-41 172.9 160 54.4
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.9e-41 171.4 92 84.8
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.5e-39 166.8 266 41.4
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 3.2e-39 165.6 162 60.5
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 5.5e-39 164.9 116 72.4
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 2.0e-36 156.4 148 51.4
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 2.0e-36 156.4 154 52.6
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 1.4e-34 150.2 154 47.4
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 1.2e-28 130.6 85 74.1
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 2.6e-28 129.4 140 45.7
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 9.8e-20 100.9 76 65.8
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.4e-18 97.1 63 74.6
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.5e-15 87.0 64 68.8
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.6e-14 82.4 91 48.4
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.7e-14 82.0 49 77.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.8e-13 80.1 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 5.2e-13 78.6 45 80.0
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 9.8e-12 74.3 137 35.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 5.4e-10 68.6 37 86.5
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 3.5e-09 65.9 37 81.1
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 3.0e-08 62.8 52 65.4


User provided reference genes

Program Settings