Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02964 Eucalyptus grandis HOM05D005475 ORTHO05D006575 5.2e-45 184.1 99 100.0
TWI73G1305 Tripterygium wilfordii HOM05D005475 ORTHO05D006575 8.0e-22 107.1 94 59.6
Potri.010G067200 Populus trichocarpa HOM05D005475 ORTHO05D006575 2.0e-20 102.4 96 53.1
Thecc.04G261900 Theobroma cacao HOM05D005475 ORTHO05D006575 2.0e-20 102.4 95 64.2
Phvul.007G271300 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 5.8e-20 100.9 98 55.1
Cfa014769 Carpinus fangiana HOM05D005475 ORTHO05D006575 2.2e-19 99.0 96 59.4
MD16G1224800 Malus domestica HOM05D005475 ORTHO05D006575 8.3e-19 97.1 96 57.3
Dinv27096 Davidia involucrata HOM05D005475 ORTHO05D006575 1.1e-18 96.7 83 61.4
Glyma.10G136600 Glycine max HOM05D005475 ORTHO05D006575 1.1e-18 96.7 97 55.7
COL.COLO4_15946 Corchorus olitorius HOM05D005475 ORTHO05D006575 1.4e-18 96.3 94 52.1
Sed0012950 Sechium edule HOM05D005475 ORTHO05D006575 3.2e-18 95.1 99 54.5
GSVIVG01027899001 Vitis vinifera HOM05D005475 ORTHO05D006575 3.2e-18 95.1 83 61.4
Ciclev10006301m.g Citrus clementina HOM05D005475 ORTHO05D006575 4.1e-18 94.7 95 54.7
MD13G1219400 Malus domestica HOM05D005475 ORTHO05D006575 7.0e-18 94.0 77 63.6
QL06p020702 Quercus lobata HOM05D005475 ORTHO05D006575 7.0e-18 94.0 94 59.6
CiPaw.01G179400 Carya illinoinensis HOM05D005475 ORTHO05D006575 9.2e-18 93.6 96 55.2
CiPaw.02G108100 Carya illinoinensis HOM05D005475 ORTHO05D006575 9.2e-18 93.6 66 68.2
Sed0016324 Sechium edule HOM05D005475 ORTHO05D006575 9.2e-18 93.6 95 56.8
Psat6g107160 Pisum sativum HOM05D005475 ORTHO05D006575 1.6e-17 92.8 98 53.1
CANSAT78G0624 Cannabis sativa HOM05D005475 ORTHO05D006575 2.0e-17 92.4 94 52.1
Prupe.1G046100 Prunus persica HOM05D005475 ORTHO05D006575 2.7e-17 92.0 95 53.7
Atru.chr4.1933 Acer truncatum HOM05D005475 ORTHO05D006575 4.6e-17 91.3 105 49.5
CSS0013344 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 6.0e-17 90.9 106 49.1
Ca_11926_v3 Cicer arietinum L. HOM05D005475 ORTHO05D006575 6.0e-17 90.9 81 56.8
ClCG05G004080 Citrullus lanatus HOM05D005475 ORTHO05D006575 7.8e-17 90.5 95 51.6
Aa31LG1G20410 Aethionema arabicum HOM05D005475 ORTHO05D006575 1.3e-16 89.7 94 50.0
Manes.03G160400 Manihot esculenta HOM05D005475 ORTHO05D006575 1.3e-16 89.7 100 60.0
Gohir.A02G042200 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.7e-16 89.4 95 51.6
Potri.008G170700 Populus trichocarpa HOM05D005475 ORTHO05D006575 1.7e-16 89.4 98 48.0
Gorai.005G053100 Gossypium raimondii HOM05D005475 ORTHO05D006575 2.3e-16 89.0 95 52.6
Gohir.D02G047800 Gossypium hirsutum HOM05D005475 ORTHO05D006575 3.0e-16 88.6 95 51.6
Hma1.2p1_0385F.1_g141450 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 3.0e-16 88.6 99 52.5
CARHR127400 Cardamine hirsuta HOM05D005475 ORTHO05D006575 3.9e-16 88.2 99 47.5
Nn3g19747 Nelumbo nucifera HOM05D005475 ORTHO05D006575 3.9e-16 88.2 78 57.7
TAR362G0816 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.0e-16 87.8 95 52.6
Duzib212G0290 Durio zibethinus HOM05D005475 ORTHO05D006575 6.6e-16 87.4 94 51.1
THA.LOC104816000 Tarenaya hassleriana HOM05D005475 ORTHO05D006575 8.6e-16 87.0 95 50.5
Rhsim02G0042800 Rhododendron simsii HOM05D005475 ORTHO05D006575 1.1e-15 86.7 100 50.0
Actinidia39922 Actinidia chinensis HOM05D005475 ORTHO05D006575 1.5e-15 86.3 100 51.0
Actinidia11364 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.5e-15 85.5 83 50.6
Actinidia20831 Actinidia chinensis HOM05D005475 ORTHO05D006575 2.5e-15 85.5 86 50.0
Medtr1g045370 Medicago truncatula HOM05D005475 ORTHO05D006575 2.5e-15 85.5 97 57.7
CAN.G220.90 Capsicum annuum HOM05D005475 ORTHO05D006575 4.3e-15 84.7 95 46.3
AL4G29060 Arabidopsis lyrata HOM05D005475 ORTHO05D006575 7.3e-15 84.0 94 47.9
Carub.0004s1502 Capsella rubella HOM05D005475 ORTHO05D006575 7.3e-15 84.0 94 48.9
Thhalv10017471m.g Eutrema salsugineum HOM05D005475 ORTHO05D006575 7.3e-15 84.0 98 48.0
Lalb_Chr19g0128471 Lupinus albus HOM05D005475 ORTHO05D006575 7.3e-15 84.0 95 50.5
Sp4g15710 Schrenkiella parvula HOM05D005475 ORTHO05D006575 9.5e-15 83.6 95 49.5
Solyc09g090540.3 Solanum lycopersicum HOM05D005475 ORTHO05D006575 1.2e-14 83.2 70 55.7
Sopen09g033470 Solanum pennellii HOM05D005475 ORTHO05D006575 1.2e-14 83.2 70 65.7
PGSC0003DMG400017155 Solanum tuberosum HOM05D005475 ORTHO05D006575 1.2e-14 83.2 70 65.7
vmacro08540 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 1.2e-14 83.2 95 47.4
BcaB02g10558 Brassica carinata HOM05D005475 ORTHO05D006575 1.6e-14 82.8 95 47.4
RcHm_v2.0_Chr4g0394791 Rosa chinensis HOM05D005475 ORTHO05D006575 1.6e-14 82.8 59 64.4
Sabra08G0130500 Salix brachista HOM05D005475 ORTHO05D006575 2.1e-14 82.4 100 48.0
Aa31LG5G3900 Aethionema arabicum HOM05D005475 ORTHO05D006575 2.8e-14 82.0 95 46.3
AT2G33390 Arabidopsis thaliana HOM05D005475 ORTHO05D006575 3.6e-14 81.6 94 47.9
Lj6g0010293 Lotus japonicus HOM05D005475 ORTHO05D006575 3.6e-14 81.6 102 55.9
vmacro15470 Vaccinium macrocarpon HOM05D005475 ORTHO05D006575 3.6e-14 81.6 100 47.0
MBI07_g18714_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 4.7e-14 81.3 83 55.4
PGR031G0084 Punica granatum HOM05D005475 ORTHO05D006575 4.7e-14 81.3 83 63.9
Gohir.D10G159400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.1e-13 80.1 101 52.5
Gorai.011G179000 Gossypium raimondii HOM05D005475 ORTHO05D006575 1.1e-13 80.1 101 52.5
Lalb_Chr06g0169471 Lupinus albus HOM05D005475 ORTHO05D006575 1.1e-13 80.1 84 51.2
Gohir.A10G108400 Gossypium hirsutum HOM05D005475 ORTHO05D006575 1.4e-13 79.7 101 52.5
Glyma.20G086200 Glycine max HOM05D005475 ORTHO05D006575 1.8e-13 79.3 77 57.1
FAN17G2060 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.8e-13 77.4 67 53.7
Glyma.20G201100 Glycine max HOM05D005475 ORTHO05D006575 6.8e-13 77.4 103 44.7
Nitab4.5_0002709g0070 Nicotiana tabacum HOM05D005475 ORTHO05D006575 6.8e-13 77.4 83 49.4
CSS0022443 Camellia sinensis var. sinensis HOM05D005475 ORTHO05D006575 8.9e-13 77.0 67 58.2
Hund03078 Selenicereus undatus HOM05D005475 ORTHO05D006575 8.9e-13 77.0 96 46.9
MELO3C006388.2 Cucumis melo HOM05D000730 ORTHO05D000578 1.2e-12 76.6 77 53.2
Phvul.L002444 Phaseolus vulgaris HOM05D005475 ORTHO05D006575 1.5e-12 76.3 104 46.2
Hma1.2p1_0112F.1_g054570 Hydrangea macrophylla HOM05D005475 ORTHO05D006575 2.0e-12 75.9 82 52.4
Nitab4.5_0001051g0090 Nicotiana tabacum HOM05D005475 ORTHO05D006575 2.0e-12 75.9 83 48.2
Sabra10G0040200 Salix brachista HOM05D005475 ORTHO05D006575 2.0e-12 75.9 74 51.4
Duzib151G0481 Durio zibethinus HOM05D005475 ORTHO05D006575 3.4e-12 75.1 79 49.4
Medtr1g073660 Medicago truncatula HOM05D005475 ORTHO05D006575 3.4e-12 75.1 95 48.4
PSO674G0109 Papaver somniferum HOM05D005475 ORTHO05D006575 3.4e-12 75.1 60 60.0
PSO832G2786 Papaver somniferum HOM05D005475 ORTHO05D006575 3.4e-12 75.1 60 60.0
VMungo0720G1758 Vigna mungo HOM05D005475 ORTHO05D006575 3.4e-12 75.1 104 45.2
CsaV3_3G011800 Cucumis sativus L. HOM05D005475 ORTHO05D006575 4.4e-12 74.7 75 53.3
Manes.15G044300 Manihot esculenta HOM05D005475 ORTHO05D006575 4.4e-12 74.7 80 53.8
Lj5g0027748 Lotus japonicus HOM05D005475 ORTHO05D006575 5.8e-12 74.3 101 50.5
A05p12130 Brassica napus HOM05D005475 ORTHO05D006575 7.5e-12 73.9 58 58.6
BraA05t20157Z Brassica rapa HOM05D005475 ORTHO05D006575 7.5e-12 73.9 58 58.6
Cc03_g06010 Coffea canephora HOM05D005475 ORTHO05D006575 1.3e-11 73.2 94 46.8
SalBow3G2868 Salvia bowleyana HOM05D005475 ORTHO05D006575 1.3e-11 73.2 66 48.5
TPR.G27310 Trifolium pratense HOM05D005475 ORTHO05D006575 1.7e-11 72.8 77 53.2
Aqoxy2G03723 Aquilegia oxysepala HOM05D005475 ORTHO05D006575 2.2e-11 72.4 56 58.9
Peaxi162Scf00033g02837 Petunia axillaris HOM05D005475 ORTHO05D006575 2.2e-11 72.4 80 48.8
CDE08G0603 Ceratophyllum demersum HOM05D005475 ORTHO05D006575 2.9e-11 72.0 88 44.3
C04p15700 Brassica napus HOM05D005475 ORTHO05D006575 3.7e-11 71.6 98 44.9
BolC4t23138H Brassica oleracea HOM05D005475 ORTHO05D006575 3.7e-11 71.6 98 44.9
Lsat_1_v5_gn_1_75221 Lactuca sativa HOM05D005475 ORTHO05D006575 4.9e-11 71.2 93 41.9
Glyma.10G189800 Glycine max HOM05D005475 ORTHO05D006575 6.4e-11 70.9 102 44.1
BcaC02g11426 Brassica carinata HOM05D005475 ORTHO05D006575 1.4e-10 69.7 97 43.3
Sc13g0006140 Simmondsia chinensis HOM05D005475 ORTHO05D006575 1.4e-10 69.7 73 52.1
MBI10_g38466_MAGBIO Magnolia biondii HOM05D005475 ORTHO05D006575 1.9e-10 69.3 100 54.0
Lalb_Chr03g0037011 Lupinus albus HOM05D005475 ORTHO05D006575 2.4e-10 68.9 118 39.0
TAR365G0748 Trochodendron aralioides HOM05D005475 ORTHO05D006575 5.4e-10 67.8 63 57.1
FAN12G1687 Fragaria x ananassa HOM05D005475 ORTHO05D006575 7.1e-10 67.4 52 59.6
BcaB06g28682 Brassica carinata HOM05D005475 ORTHO05D006575 9.2e-10 67.0 54 57.4
ECA248G3571 Erigeron canadensis HOM05D000730 ORTHO05D000578 9.2e-10 67.0 66 50.0
Rhsim04G0173600 Rhododendron simsii HOM05D005475 ORTHO05D006575 9.2e-10 67.0 64 57.8
Migut.N00292 Erythranthe guttata HOM05D005475 ORTHO05D006575 1.2e-09 66.6 74 48.6
A04p25690 Brassica napus HOM05D005475 ORTHO05D006575 1.6e-09 66.2 54 55.6
BraA04t18073Z Brassica rapa HOM05D005475 ORTHO05D006575 1.6e-09 66.2 54 55.6
AUR62002181 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.6e-09 66.2 95 51.6
AUR62015529 Chenopodium quinoa HOM05D005475 ORTHO05D006575 1.6e-09 66.2 95 51.6
RcHm_v2.0_Chr4g0394821 Rosa chinensis HOM05D005475 ORTHO05D006575 1.6e-09 66.2 39 74.4
TPR.G28846 Trifolium pratense HOM05D005475 ORTHO05D006575 2.7e-09 65.5 98 43.9
BcaC02g07831 Brassica carinata HOM05D005475 ORTHO05D006575 3.5e-09 65.1 54 55.6
C04p62850 Brassica napus HOM05D005475 ORTHO05D006575 3.5e-09 65.1 54 55.6
BolC4t27768H Brassica oleracea HOM05D005475 ORTHO05D006575 3.5e-09 65.1 54 55.6
Psat6g117200 Pisum sativum HOM05D005475 ORTHO05D006575 3.5e-09 65.1 87 46.0
BcaC07g37337 Brassica carinata HOM05D005475 ORTHO05D006575 4.6e-09 64.7 58 53.4
C08p07780 Brassica napus HOM05D005475 ORTHO05D006575 4.6e-09 64.7 58 53.4
BolC8t47626H Brassica oleracea HOM05D005475 ORTHO05D006575 4.6e-09 64.7 58 53.4
A03p18710 Brassica napus HOM05D005475 ORTHO05D006575 1.7e-08 62.8 54 51.9
BraA03t11131Z Brassica rapa HOM05D005475 ORTHO05D006575 1.7e-08 62.8 54 51.9
FvH4_4g04340 Fragaria vesca HOM05D005475 ORTHO05D006575 2.3e-08 62.4 48 58.3
C03p21860 Brassica napus HOM05D005475 ORTHO05D006575 5.1e-08 61.2 54 51.9
BolC3t14568H Brassica oleracea HOM05D005475 ORTHO05D006575 5.1e-08 61.2 54 51.9
FAN22G0728 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.6e-08 60.8 47 57.4
FAN22G1457 Fragaria x ananassa HOM05D005475 ORTHO05D006575 6.6e-08 60.8 47 57.4
Nn1g02914 Nelumbo nucifera HOM05D005475 ORTHO05D006575 6.6e-08 60.8 64 54.7
Lalb_Chr02g0150621 Lupinus albus HOM05D005475 ORTHO05D006575 1.5e-07 59.7 54 55.6
BcaC01g05844 Brassica carinata HOM05D005475 ORTHO05D006575 1.9e-07 59.3 53 49.1
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 2.1e-06 55.8 93 35.5
EL10Ac3g04956 Beta vulgaris HOM05D005475 ORTHO05D006575 3.6e-06 55.1 77 45.5
HanXRQChr01g0022901 Helianthus annuus HOM05D005475 ORTHO05D006575 6.2e-06 54.3 46 56.5


User provided reference genes

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