Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 4.2e-144 515.0 327 100.0
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 1.4e-38 164.5 189 48.1
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.4e-38 164.5 193 48.7
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 4.1e-38 162.9 188 48.9
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 9.1e-38 161.8 192 47.9
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 1.2e-37 161.4 191 47.1
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 2.0e-37 160.6 187 47.6
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 4.5e-37 159.5 192 47.4
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.5e-35 153.7 185 48.6
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 4.2e-35 152.9 187 44.4
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 5.5e-35 152.5 194 45.4
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 9.4e-35 151.8 194 45.4
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 1.2e-34 151.4 189 45.5
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 1.2e-34 151.4 195 54.9
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.2e-34 151.4 190 47.4
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 2.1e-34 150.6 187 46.0
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.1e-34 150.6 193 46.1
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 3.6e-34 149.8 189 45.5
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 6.1e-34 149.1 192 48.4
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 8.0e-34 148.7 194 44.8
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.8e-33 147.5 190 45.8
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 2.3e-33 147.1 188 46.8
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 3.0e-33 146.7 189 45.0
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 8.8e-33 145.2 190 45.3
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 3.3e-32 143.3 201 44.3
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 3.3e-32 143.3 193 45.6
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 3.3e-32 143.3 191 41.9
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.3e-31 141.4 202 45.5
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.2e-31 140.6 192 44.8
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 2.2e-31 140.6 187 49.7
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 2.8e-31 140.2 202 45.0
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 8.2e-31 138.7 192 44.3
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 5.3e-30 136.0 193 44.0
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 9.1e-30 135.2 173 42.8
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 9.1e-30 135.2 200 48.5
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.6e-29 133.7 316 34.2
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 3.5e-29 133.3 192 43.2
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.0e-28 131.7 192 42.7
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 2.2e-28 130.6 190 44.2
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 5.0e-28 129.4 190 39.5
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 8.5e-28 128.6 204 40.7
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.5e-27 127.1 183 43.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.5e-27 125.9 187 41.7
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 2.1e-26 124.0 194 43.8
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 2.1e-26 124.0 195 47.7
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 6.1e-26 122.5 195 41.5
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.1e-26 122.5 191 41.4
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.1e-26 122.5 191 41.4
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 6.1e-26 122.5 195 48.2
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 8.0e-26 122.1 187 40.6
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 8.0e-26 122.1 192 40.6
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 4.0e-25 119.8 197 40.1
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 5.2e-25 119.4 193 39.4
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 5.2e-25 119.4 197 39.6
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.2e-24 118.2 190 39.5
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.5e-24 117.9 187 41.2
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.5e-24 117.9 202 42.1
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.3e-23 114.8 191 38.7
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.3e-23 114.8 188 42.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.7e-23 114.4 191 36.1
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.7e-23 114.4 190 42.1
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 2.2e-23 114.0 214 36.0
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 3.7e-23 113.2 188 41.5
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 4.8e-23 112.8 191 38.2
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.3e-23 112.1 189 36.0
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 1.1e-22 111.7 192 37.5
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 1.8e-22 110.9 195 37.9
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 1.8e-22 110.9 246 35.0
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 2.4e-22 110.5 226 34.1
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 5.4e-22 109.4 196 36.2
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 1.2e-21 108.2 194 40.2
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 1.6e-21 107.8 188 38.3
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.7e-21 107.1 189 39.2
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.9e-21 105.9 200 36.5
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 1.0e-20 105.1 185 37.3
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 1.7e-20 104.4 178 37.6
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.2e-20 104.0 204 36.3
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 2.2e-20 104.0 204 36.3
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 2.9e-20 103.6 188 39.4
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.9e-20 103.6 193 41.5
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 3.8e-20 103.2 183 35.0
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.0e-20 102.8 179 39.1
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.5e-19 101.3 190 35.8
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 4.2e-19 99.8 193 33.7
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.5e-19 99.4 203 43.3
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 7.2e-19 99.0 193 40.9
Carub.0004s1471 Capsella rubella HOM05D004244 ORTHO05D004964 9.4e-19 98.6 190 37.9
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.6e-18 97.8 176 35.8
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 2.1e-18 97.4 185 34.1
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.6e-18 96.7 196 32.1
AT2G33250 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 8.0e-18 95.5 190 35.3
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.0e-17 95.1 181 37.0
BcaC02g07847 Brassica carinata HOM05D004244 ORTHO05D004964 1.8e-17 94.4 188 36.7
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.8e-17 94.4 186 35.5
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 3.0e-17 93.6 179 33.5
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 4.0e-17 93.2 185 34.6
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 4.0e-17 93.2 189 37.0
Duzib266G0003 Durio zibethinus HOM05D004244 ORTHO05D004964 4.0e-17 93.2 64 65.6
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.8e-17 92.4 191 34.0
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 6.8e-17 92.4 169 38.5
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 1.5e-16 91.3 194 32.5
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.0e-16 90.9 203 38.9
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.0e-16 90.9 188 36.2
SGA_v2.0_scaffold398G50771 Striga asiatica HOM05D004244 ORTHO05D004964 2.6e-16 90.5 183 39.3
Ciclev10005346m.g Citrus clementina HOM05D004244 ORTHO05D004964 5.7e-16 89.4 229 31.4
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 5.7e-16 89.4 179 34.1
Duzib151G0660 Durio zibethinus HOM05D004244 ORTHO05D004964 9.8e-16 88.6 135 52.6
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.3e-15 88.2 199 33.2
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 1.3e-15 88.2 200 36.0
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 2.2e-15 87.4 169 39.1
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 2.2e-15 87.4 193 35.2
CARHR127250 Cardamine hirsuta HOM05D004244 ORTHO05D004964 8.3e-15 85.5 184 33.7
Sed0027895 Sechium edule HOM05D004244 ORTHO05D004964 8.3e-15 85.5 142 45.1
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.1e-14 85.1 174 35.6
Actinidia39939 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.4e-14 84.7 111 52.3
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 1.4e-14 84.7 174 36.2
THA.LOC104826102 Tarenaya hassleriana HOM05D004244 ORTHO05D004964 1.4e-14 84.7 194 35.6
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 2.4e-14 84.0 180 32.8
BcaC02g07850 Brassica carinata HOM05D004244 ORTHO05D004964 7.0e-14 82.4 188 33.5
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 7.0e-14 82.4 184 31.5
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.2e-13 81.6 142 33.1
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 2.0e-13 80.9 174 35.6
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 3.5e-13 80.1 168 33.9
AL4G28880 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 5.9e-13 79.3 186 33.3
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 1.0e-12 78.6 179 31.8
Hund24865 Selenicereus undatus HOM05D004244 ORTHO05D004964 1.0e-12 78.6 155 36.1
A04p25560 Brassica napus HOM05D004244 ORTHO05D004964 1.3e-12 78.2 174 34.5
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 1.3e-12 78.2 183 31.1
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 2.3e-12 77.4 155 38.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 2.9e-12 77.0 205 31.7
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.8e-12 76.6 151 37.1
Medtr4g088590 Medicago truncatula HOM05D004244 ORTHO05D004964 3.8e-12 76.6 54 66.7
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.9e-11 74.3 151 35.8
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.5e-11 73.9 173 35.3
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 3.3e-11 73.6 186 32.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 4.2e-11 73.2 180 33.3
unitig_26.g9547 Utricularia gibba HOM05D004244 ORTHO05D004964 5.6e-11 72.8 199 31.2
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 9.5e-11 72.0 164 33.5
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 1.6e-10 71.2 204 30.4
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.8e-10 70.5 180 34.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 8.0e-10 68.9 185 32.4
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-09 68.2 215 28.8
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.8e-09 67.8 193 30.1
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.8e-09 67.8 112 40.2
Zm00001eb156930 Zea mays HOM05D004244 ORTHO05D004964 1.5e-08 64.7 60 48.3
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 4.4e-08 63.2 149 37.6
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 9.8e-08 62.0 188 31.9
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 9.8e-08 62.0 188 31.9
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 1.3e-07 61.6 188 31.9
Os01g0680600 Oryza sativa ssp. japonica HOM05D004244 ORTHO05D004964 3.7e-07 60.1 218 30.3
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 4.9e-07 59.7 187 32.1
Zm00001eb360230 Zea mays HOM05D004244 ORTHO05D004964 4.9e-07 59.7 234 24.8
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 6.4e-07 59.3 187 32.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 2.4e-06 57.4 151 29.1
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 3.2e-06 57.0 187 29.9


User provided reference genes

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