Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02882 Eucalyptus grandis HOM05D006167 ORTHO05D007635 3.4e-46 188.0 93 100.0
CiPaw.01G175200 Carya illinoinensis HOM05D006167 ORTHO05D007635 1.2e-22 109.8 64 84.4
ClCG06G007470 Citrullus lanatus HOM05D006167 ORTHO05D007635 4.4e-22 107.8 64 82.8
PGR004G2513 Punica granatum HOM05D006167 ORTHO05D007635 5.8e-22 107.5 64 85.9
CsaV3_2G012210 Cucumis sativus L. HOM05D006167 ORTHO05D007635 1.1e-20 103.2 64 79.7
MELO3C023070.2 Cucumis melo HOM05D006167 ORTHO05D007635 1.4e-20 102.8 64 78.1
Sed0006558 Sechium edule HOM05D006167 ORTHO05D007635 3.2e-20 101.7 64 76.6
Atru.chr4.1872 Acer truncatum HOM05D006167 ORTHO05D007635 4.1e-20 101.3 64 78.1
Actinidia32969 Actinidia chinensis HOM05D006167 ORTHO05D007635 2.1e-19 99.0 85 58.8
CSS0017011 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 2.7e-19 98.6 64 75.0
CSS0046609 Camellia sinensis var. sinensis HOM05D006167 ORTHO05D007635 2.7e-19 98.6 64 75.0
Potri.008G174000 Populus trichocarpa HOM05D006167 ORTHO05D007635 4.6e-19 97.8 64 75.0
Cfa014825 Carpinus fangiana HOM05D006167 ORTHO05D007635 1.0e-18 96.7 60 76.7
Cpa.g.sc59.38 Carica papaya HOM05D006167 ORTHO05D007635 1.3e-18 96.3 64 73.4
Potri.010G063100 Populus trichocarpa HOM05D006167 ORTHO05D007635 3.0e-18 95.1 64 73.4
Lalb_Chr03g0036881 Lupinus albus HOM05D006167 ORTHO05D007635 5.1e-18 94.4 64 79.7
Prupe.1G052700 Prunus persica HOM05D006167 ORTHO05D007635 8.6e-18 93.6 71 69.0
Dinv29784 Davidia involucrata HOM05D006167 ORTHO05D007635 1.5e-17 92.8 71 67.6
RcHm_v2.0_Chr4g0396111 Rosa chinensis HOM05D006167 ORTHO05D007635 1.9e-17 92.4 79 54.4
Hma1.2p1_0112F.1_g054980 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.5e-17 92.0 64 64.1
THA.LOC109116489 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 2.5e-17 92.0 64 70.3
THA.LOC109116515 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 2.5e-17 92.0 64 70.3
Nn1g03031 Nelumbo nucifera HOM05D006167 ORTHO05D007635 7.3e-17 90.5 64 65.6
Duzib052G0384 Durio zibethinus HOM05D006167 ORTHO05D007635 9.6e-17 90.1 64 71.9
Duzib052G0895 Durio zibethinus HOM05D006167 ORTHO05D007635 9.6e-17 90.1 64 71.9
Duzib266G0005 Durio zibethinus HOM05D006167 ORTHO05D007635 9.6e-17 90.1 64 71.9
TWI09G0967 Tripterygium wilfordii HOM05D006167 ORTHO05D007635 1.2e-16 89.7 64 65.6
Cc03_g06850 Coffea canephora HOM05D006167 ORTHO05D007635 1.6e-16 89.4 67 67.2
THA.LOC109117012 Tarenaya hassleriana HOM05D006167 ORTHO05D007635 1.6e-16 89.4 64 67.2
EL10Ac3g06721 Beta vulgaris HOM05D006167 ORTHO05D007635 2.1e-16 89.0 75 64.0
Lj4g0015547 Lotus japonicus HOM05D006167 ORTHO05D007635 2.8e-16 88.6 61 75.4
Thecc.04G269200 Theobroma cacao HOM05D006167 ORTHO05D007635 4.7e-16 87.8 64 71.9
Aa31LG9G4150 Aethionema arabicum HOM05D006167 ORTHO05D007635 1.8e-15 85.9 64 60.9
FAN12G1688 Fragaria x ananassa HOM05D006167 ORTHO05D007635 1.8e-15 85.9 62 66.1
FAN17G0547 Fragaria x ananassa HOM05D006167 ORTHO05D007635 1.8e-15 85.9 62 66.1
TAR362G1146 Trochodendron aralioides HOM05D006167 ORTHO05D007635 2.4e-15 85.5 64 64.1
COL.COLO4_16007 Corchorus olitorius HOM05D006167 ORTHO05D007635 3.1e-15 85.1 60 73.3
Glyma.20G081600 Glycine max HOM05D006167 ORTHO05D007635 3.1e-15 85.1 59 71.2
FvH4_4g05200 Fragaria vesca HOM05D006167 ORTHO05D007635 5.2e-15 84.3 62 64.5
Hma1.2p1_0144F.1_g065120 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 1.2e-14 83.2 60 68.3
Hma1.2p1_0432F.1_g151790 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 2.0e-14 82.4 62 61.3
Oeu012938.1 Olea europaea HOM05D006167 ORTHO05D007635 2.0e-14 82.4 66 63.6
HanXRQChr13g0410431 Helianthus annuus HOM05D006167 ORTHO05D007635 2.6e-14 82.0 65 61.5
Dinv18834 Davidia involucrata HOM05D006167 ORTHO05D007635 3.4e-14 81.6 80 56.2
Nitab4.5_0000867g0070 Nicotiana tabacum HOM05D006167 ORTHO05D007635 4.4e-14 81.3 64 67.2
CANSAT78G0928 Cannabis sativa HOM05D006167 ORTHO05D007635 5.8e-14 80.9 64 62.5
CANSAT54G0143 Cannabis sativa HOM05D006167 ORTHO05D007635 9.9e-14 80.1 59 69.5
CARHR219150 Cardamine hirsuta HOM05D006167 ORTHO05D007635 1.3e-13 79.7 64 64.1
Gohir.D02G050200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-13 79.3 64 65.6
AL7G43090 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 2.2e-13 79.0 64 62.5
Sc13g0003020 Simmondsia chinensis HOM05D006167 ORTHO05D007635 2.9e-13 78.6 73 57.5
Carub.0007s2902 Capsella rubella HOM05D006167 ORTHO05D007635 3.8e-13 78.2 64 60.9
AT4G13520 Arabidopsis thaliana HOM05D006167 ORTHO05D007635 4.9e-13 77.8 64 60.9
Thhalv10026745m.g Eutrema salsugineum HOM05D006167 ORTHO05D007635 4.9e-13 77.8 64 60.9
AL5G12040 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 6.4e-13 77.4 64 60.9
AL5G12300 Arabidopsis lyrata HOM05D006167 ORTHO05D007635 6.4e-13 77.4 64 60.9
Gorai.004G118700 Gossypium raimondii HOM05D006167 ORTHO05D007635 6.4e-13 77.4 64 65.6
BcaB04g17822 Brassica carinata HOM05D006167 ORTHO05D007635 8.4e-13 77.0 64 57.8
BcaC07g37498 Brassica carinata HOM05D006167 ORTHO05D007635 8.4e-13 77.0 64 57.8
A08p07960 Brassica napus HOM05D006167 ORTHO05D007635 8.4e-13 77.0 64 57.8
BolC8t47817H Brassica oleracea HOM05D006167 ORTHO05D007635 8.4e-13 77.0 64 57.8
BraA08t32818Z Brassica rapa HOM05D006167 ORTHO05D007635 8.4e-13 77.0 64 57.8
arahy.Tifrunner.gnm1.ann1.C36CE0 Arachis hypogaea HOM05D000254 ORTHO05D000165 1.1e-12 76.6 48 83.3
Sp7g11110 Schrenkiella parvula HOM05D006167 ORTHO05D007635 1.1e-12 76.6 64 57.8
Lsat_1_v5_gn_1_76160 Lactuca sativa HOM05D006167 ORTHO05D007635 1.4e-12 76.3 61 60.7
Psat6g109400 Pisum sativum HOM05D006167 ORTHO05D007635 1.4e-12 76.3 75 54.7
SHI00872 Sapria himalayana HOM05D006167 ORTHO05D007635 1.4e-12 76.3 62 59.7
Solyc12g097040.1 Solanum lycopersicum HOM05D006167 ORTHO05D007635 1.4e-12 76.3 66 59.1
CAN.G566.4 Capsicum annuum HOM05D006167 ORTHO05D007635 2.4e-12 75.5 67 58.2
Gohir.D04G064600 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.2e-12 75.1 64 65.6
Gohir.D08G046000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.2e-12 75.1 63 65.1
Gorai.008G094700 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.2e-12 75.1 63 65.1
SalBow5G4407 Salvia bowleyana HOM05D006167 ORTHO05D007635 3.2e-12 75.1 76 57.9
SalBow5G4759 Salvia bowleyana HOM05D006167 ORTHO05D007635 3.2e-12 75.1 76 57.9
Ca_00011_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 4.2e-12 74.7 59 62.7
DCAR_027359 Daucus carota HOM05D006167 ORTHO05D007635 4.2e-12 74.7 59 64.4
Gohir.D08G110800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 5.4e-12 74.3 64 62.5
Gorai.011G155100 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.4e-12 74.3 64 64.1
vmacro15491 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 7.1e-12 73.9 70 54.3
vmacro22827 Vaccinium macrocarpon HOM05D006167 ORTHO05D007635 7.1e-12 73.9 70 54.3
Ca_26216_v3 Cicer arietinum L. HOM05D006167 ORTHO05D007635 9.3e-12 73.6 59 62.7
Gohir.D05G314750 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.2e-11 73.2 64 62.5
Gohir.D11G199000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.2e-11 73.2 64 60.9
Gorai.007G213200 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.2e-11 73.2 64 62.5
Gorai.012G072500 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.2e-11 73.2 64 64.1
Hma1.2p1_0014F.1_g009760 Hydrangea macrophylla HOM05D006167 ORTHO05D007635 1.2e-11 73.2 59 57.6
Sc19g0005700 Simmondsia chinensis HOM05D006167 ORTHO05D007635 1.6e-11 72.8 64 59.4
Gohir.D09G064700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 2.1e-11 72.4 64 60.9
SalBow3G0251 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.1e-11 72.4 67 62.7
SalBow3G4531 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.1e-11 72.4 67 62.7
Gorai.008G097400 Gossypium raimondii HOM05D006167 ORTHO05D007635 2.7e-11 72.0 64 60.9
Gorai.009G336300 Gossypium raimondii HOM05D006167 ORTHO05D007635 2.7e-11 72.0 64 60.9
SalBow5G0916 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.7e-11 72.0 66 62.1
SalBow5G2020 Salvia bowleyana HOM05D006167 ORTHO05D007635 2.7e-11 72.0 66 62.1
Gorai.011G088300 Gossypium raimondii HOM05D006167 ORTHO05D007635 3.5e-11 71.6 64 60.9
Lsat_1_v5_gn_2_42001 Lactuca sativa HOM05D006167 ORTHO05D007635 3.5e-11 71.6 66 56.1
Peaxi162Scf01007g00005 Petunia axillaris HOM05D006167 ORTHO05D007635 3.5e-11 71.6 72 55.6
Gohir.D03G098800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.6e-11 71.2 64 60.9
AUR62035353 Chenopodium quinoa HOM05D006167 ORTHO05D007635 7.8e-11 70.5 55 69.1
Migut.N00323 Erythranthe guttata HOM05D006167 ORTHO05D007635 7.8e-11 70.5 67 61.2
Gohir.D02G123800 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.3e-10 69.7 64 60.9
Gohir.D10G139400 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-10 69.3 64 60.9
Gohir.D12G087200 Gossypium hirsutum HOM05D006167 ORTHO05D007635 1.7e-10 69.3 64 59.4
Gorai.005G130300 Gossypium raimondii HOM05D006167 ORTHO05D007635 1.7e-10 69.3 64 60.9
Rhsim09G0043900 Rhododendron simsii HOM05D006167 ORTHO05D007635 2.3e-10 68.9 52 71.2
Gohir.D01G140700 Gossypium hirsutum HOM05D006167 ORTHO05D007635 3.0e-10 68.6 64 60.9
Gorai.003G103700 Gossypium raimondii HOM05D006167 ORTHO05D007635 5.1e-10 67.8 64 57.8
unitig_744.g24610 Utricularia gibba HOM05D006167 ORTHO05D007635 1.5e-09 66.2 62 61.3
Aqoxy5G00097 Aquilegia oxysepala HOM05D006167 ORTHO05D007635 1.9e-09 65.9 64 56.2
Phvul.007G232600 Phaseolus vulgaris HOM05D006167 ORTHO05D007635 1.9e-09 65.9 59 61.0
TPR.G23974 Trifolium pratense HOM05D006167 ORTHO05D007635 3.3e-09 65.1 59 59.3
Atru.chr1.877 Acer truncatum HOM05D006167 ORTHO05D007635 9.6e-09 63.5 49 71.4
ECA248G1405 Erigeron canadensis HOM05D006167 ORTHO05D007635 9.6e-09 63.5 77 46.8
SEGI_07901 Sequoiadendron giganteum HOM05D006167 ORTHO05D007635 2.8e-08 62.0 62 53.2
Gohir.D04G080000 Gossypium hirsutum HOM05D006167 ORTHO05D007635 4.8e-08 61.2 59 59.3
Gorai.010G122300 Gossypium raimondii HOM05D006167 ORTHO05D007635 4.8e-08 61.2 56 60.7
SGA_v2.0_scaffold35G14127 Striga asiatica HOM05D006167 ORTHO05D007635 8.1e-08 60.5 67 53.7
TAR629G1972 Trochodendron aralioides HOM05D006167 ORTHO05D007635 1.4e-07 59.7 66 45.5
Mapoly0016s0086 Marchantia polymorpha HOM05D006167 ORTHO05D007635 2.4e-07 58.9 63 55.6
Aa31LG8G10950 Aethionema arabicum HOM05D006167 ORTHO05D007635 4.0e-07 58.2 73 46.6
SGA_v2.0_scaffold189G40388 Striga asiatica HOM05D006167 ORTHO05D007635 5.3e-07 57.8 72 50.0
HPP92_017313 Vanilla planifolia HOM05D006167 ORTHO05D007635 2.0e-06 55.8 55 58.2
Ah.12g062540 Amaranthus hybridus HOM05D006167 ORTHO05D007635 2.6e-06 55.5 60 51.7
A02p27890 Brassica napus HOM05D016819 ORTHO05D017546 2.6e-06 55.5 52 59.6
BraA02t07827Z Brassica rapa HOM05D016819 ORTHO05D017546 2.6e-06 55.5 52 59.6
CARHR100370 Cardamine hirsuta HOM05D024673 ORTHO05D026828 2.6e-06 55.5 81 43.2
Migut.M01352 Erythranthe guttata HOM05D006167 ORTHO05D007635 3.4e-06 55.1 67 49.3
BolC2t10448H Brassica oleracea HOM05D016819 ORTHO05D017546 7.6e-06 53.9 52 57.7


User provided reference genes

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