Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02864 Eucalyptus grandis HOM05D007543 ORTHO05D009555 1.9e-111 406.0 224 100.0
Thecc.04G215800 Theobroma cacao HOM05D007543 ORTHO05D009555 9.2e-66 254.2 142 83.8
Duzib151G0611 Durio zibethinus HOM05D007543 ORTHO05D009555 3.0e-64 249.2 142 81.7
Manes.15G048300 Manihot esculenta HOM05D007543 ORTHO05D009555 3.3e-63 245.7 141 79.4
COL.COLO4_05738 Corchorus olitorius HOM05D007543 ORTHO05D009555 5.6e-63 245.0 141 81.6
Ciclev10005680m.g Citrus clementina HOM05D007543 ORTHO05D009555 9.5e-63 244.2 142 78.9
Atru.chr4.1820 Acer truncatum HOM05D007543 ORTHO05D009555 1.6e-62 243.4 137 82.5
CiPaw.01G206300 Carya illinoinensis HOM05D007543 ORTHO05D009555 1.6e-62 243.4 141 79.4
QL06p022584 Quercus lobata HOM05D007543 ORTHO05D009555 6.2e-62 241.5 141 78.7
Potri.010G060800 Populus trichocarpa HOM05D007543 ORTHO05D009555 3.1e-61 239.2 141 76.6
CiPaw.02G128000 Carya illinoinensis HOM05D007543 ORTHO05D009555 1.5e-60 236.9 137 80.3
GSVIVG01029024001 Vitis vinifera HOM05D007543 ORTHO05D009555 1.5e-60 236.9 140 78.6
Actinidia35927 Actinidia chinensis HOM05D007543 ORTHO05D009555 5.8e-60 235.0 141 77.3
Hma1.2p1_1076F.1_g254630 Hydrangea macrophylla HOM05D007543 ORTHO05D009555 7.6e-60 234.6 137 79.6
Potri.008G175200 Populus trichocarpa HOM05D007543 ORTHO05D009555 6.4e-59 231.5 141 73.8
TAR362G0720 Trochodendron aralioides HOM05D007543 ORTHO05D009555 1.1e-58 230.7 141 75.9
Nn1g03077 Nelumbo nucifera HOM05D007543 ORTHO05D009555 4.1e-58 228.8 137 74.5
TWI53G0267 Tripterygium wilfordii HOM05D007543 ORTHO05D009555 3.9e-56 222.2 198 66.7
Rhsim09G0045000 Rhododendron simsii HOM05D007543 ORTHO05D009555 2.5e-55 219.5 172 62.8
Ciclev10005675m.g Citrus clementina HOM05D007543 ORTHO05D009555 3.3e-55 219.2 141 72.3
CSS0020488 Camellia sinensis var. sinensis HOM05D007543 ORTHO05D009555 9.6e-55 217.6 130 76.9
ATR0787G197 Amborella trichopoda HOM05D007543 ORTHO05D009555 3.1e-53 212.6 136 71.3
ClCG05G003720 Citrullus lanatus HOM05D007543 ORTHO05D009555 3.1e-53 212.6 141 69.5
Sed0003983 Sechium edule HOM05D007543 ORTHO05D009555 4.0e-53 212.2 141 69.5
Nitab4.5_0000451g0150 Nicotiana tabacum HOM05D007543 ORTHO05D009555 8.9e-53 211.1 155 64.5
DCAR_002284 Daucus carota HOM05D007543 ORTHO05D009555 2.6e-52 209.5 138 73.9
CsaV3_3G011440 Cucumis sativus L. HOM05D007543 ORTHO05D009555 9.9e-52 207.6 181 56.4
RcHm_v2.0_Chr4g0396531 Rosa chinensis HOM05D007543 ORTHO05D009555 9.9e-52 207.6 141 68.1
Sc19g0005790 Simmondsia chinensis HOM05D007543 ORTHO05D009555 2.9e-51 206.1 140 67.1
Nitab4.5_0003136g0030 Nicotiana tabacum HOM05D007543 ORTHO05D009555 4.2e-50 202.2 151 64.2
Lsat_1_v5_gn_1_76300 Lactuca sativa HOM05D007543 ORTHO05D009555 1.2e-49 200.7 142 66.2
Lsat_1_v5_gn_2_41901 Lactuca sativa HOM05D007543 ORTHO05D009555 2.7e-49 199.5 142 68.3
HanXRQChr01g0022581 Helianthus annuus HOM05D007543 ORTHO05D009555 3.5e-49 199.1 142 65.5
PSO764G0201 Papaver somniferum HOM05D007543 ORTHO05D009555 3.5e-49 199.1 141 66.0
PGSC0003DMG400011574 Solanum tuberosum HOM05D007543 ORTHO05D009555 3.5e-49 199.1 137 67.9
CAN.G1588.1 Capsicum annuum HOM05D007543 ORTHO05D009555 4.6e-49 198.7 138 65.2
PSO832G0138 Papaver somniferum HOM05D007543 ORTHO05D009555 7.8e-49 198.0 141 65.2
SEGI_36435 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 3.9e-48 195.7 140 63.6
EL10Ac3g06745 Beta vulgaris HOM05D007543 ORTHO05D009555 3.3e-47 192.6 134 64.9
Lsat_1_v5_gn_1_76260 Lactuca sativa HOM05D007543 ORTHO05D009555 1.3e-46 190.7 150 60.0
Sabra08G0133600 Salix brachista HOM05D007543 ORTHO05D009555 3.6e-46 189.1 141 65.2
Os07g0170800 Oryza sativa ssp. japonica HOM05D007543 ORTHO05D009555 3.1e-45 186.0 136 62.5
Actinidia25090 Actinidia chinensis HOM05D007543 ORTHO05D009555 1.2e-44 184.1 105 78.1
Lsat_1_v5_gn_0_4560 Lactuca sativa HOM05D007543 ORTHO05D009555 3.4e-44 182.6 137 64.2
Lsat_1_v5_gn_0_4520 Lactuca sativa HOM05D007543 ORTHO05D009555 2.9e-43 179.5 134 63.4
Zm00001eb222310 Zea mays HOM05D007543 ORTHO05D009555 3.8e-43 179.1 136 60.3
vmacro00522 Vaccinium macrocarpon HOM05D007543 ORTHO05D009555 1.6e-41 173.7 165 55.2
HanXRQChr06g0183241 Helianthus annuus HOM05D007543 ORTHO05D009555 2.3e-40 169.9 103 74.8
Haze_11534 Corylus avellana HOM05D007543 ORTHO05D009555 1.1e-39 167.5 183 50.3
Lsat_1_v5_gn_1_76220 Lactuca sativa HOM05D007543 ORTHO05D009555 1.1e-37 161.0 142 56.3
MD13G1227700 Malus domestica HOM05D007543 ORTHO05D009555 1.1e-37 161.0 101 73.3
Migut.G00602 Erythranthe guttata HOM05D007543 ORTHO05D009555 1.9e-34 150.2 112 58.9
MELO3C006351.2 Cucumis melo HOM05D007543 ORTHO05D009555 1.8e-32 143.7 141 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 5.3e-29 132.1 172 38.4
SMO142G0023 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 3.4e-28 129.4 149 42.3
Dinv29774 Davidia involucrata HOM05D007543 ORTHO05D009555 5.8e-28 128.6 77 81.8
Ciclev10006635m.g Citrus clementina HOM05D007543 ORTHO05D009555 2.3e-24 116.7 142 47.2
Mapoly0044s0133 Marchantia polymorpha HOM05D007543 ORTHO05D009555 2.5e-23 113.2 137 39.4
AagrBONN_evm.TU.Sc2ySwM_368.1268 Anthoceros agrestis HOM05D007543 ORTHO05D009555 5.7e-23 112.1 138 42.8
AagrBONN_evm.TU.Sc2ySwM_344.5003 Anthoceros agrestis HOM05D007543 ORTHO05D009555 3.7e-22 109.4 99 48.5
Cfa014866 Carpinus fangiana HOM05D007543 ORTHO05D009555 4.8e-22 109.0 55 81.8
AagrBONN_evm.TU.Sc2ySwM_117.1924 Anthoceros agrestis HOM05D007543 ORTHO05D009555 1.1e-21 107.8 138 40.6
SMO358G0284 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 9.0e-21 104.8 90 51.1
AUR62035905 Chenopodium quinoa HOM05D007543 ORTHO05D009555 1.5e-20 104.0 138 39.9
CANSAT78G0099 Cannabis sativa HOM05D007543 ORTHO05D009555 3.4e-20 102.8 56 76.8
AUR62035334 Chenopodium quinoa HOM05D007543 ORTHO05D009555 1.0e-19 101.3 58 69.0
FAN07G2337 Fragaria x ananassa HOM05D007543 ORTHO05D009555 2.9e-19 99.8 73 63.0
Cc03_g07020 Coffea canephora HOM05D007543 ORTHO05D009555 4.6e-17 92.4 63 73.0
HanXRQChr01g0022591 Helianthus annuus HOM05D007543 ORTHO05D009555 1.8e-16 90.5 142 39.4
FAN11G1069 Fragaria x ananassa HOM05D007543 ORTHO05D009555 8.7e-16 88.2 66 63.6
Cc03_g07030 Coffea canephora HOM05D007543 ORTHO05D009555 4.3e-15 85.9 54 66.7
SMO356G0252 Selaginella moellendorffii HOM05D007543 ORTHO05D009555 2.4e-13 80.1 125 35.2
Pp3c4_1040 Physcomitrium patens HOM05D007543 ORTHO05D009555 3.1e-13 79.7 139 33.8
SEGI_36569 Sequoiadendron giganteum HOM05D007543 ORTHO05D009555 3.1e-13 79.7 138 31.9
Cpa.g.sc59.61 Carica papaya HOM05D007543 ORTHO05D009555 4.1e-13 79.3 52 76.9
Lj6A641T47 Lonicera japonica HOM05D007543 ORTHO05D009555 4.1e-13 79.3 43 79.1
Lj6C641T2 Lonicera japonica HOM05D007543 ORTHO05D009555 3.8e-11 72.8 46 76.1
MBI10_g16799_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 1.4e-10 70.9 45 66.7
MD13G1227800 Malus domestica HOM05D007543 ORTHO05D009555 2.5e-10 70.1 43 67.4
ECA248G0596 Erigeron canadensis HOM05D007543 ORTHO05D009555 7.2e-10 68.6 39 71.8
MBI10_g16797_MAGBIO Magnolia biondii HOM05D007543 ORTHO05D009555 2.1e-09 67.0 45 73.3
Oeu024843.1 Olea europaea HOM05D007543 ORTHO05D009555 2.1e-09 67.0 47 63.8
Solyc09g091150.2 Solanum lycopersicum HOM05D007543 ORTHO05D009555 2.7e-09 66.6 50 66.0
Cre10.g418851 Chlamydomonas reinhardtii HOM05D007543 ORTHO05D009555 7.9e-09 65.1 141 32.6
HanXRQChr06g0183251 Helianthus annuus HOM05D007543 ORTHO05D009555 7.9e-09 65.1 40 70.0
Potri.010G061000 Populus trichocarpa HOM05D007543 ORTHO05D009555 1.0e-08 64.7 47 63.8
Sopen09g034130 Solanum pennellii HOM05D007543 ORTHO05D009555 2.3e-08 63.5 50 64.0
unitig_0.g2250 Utricularia gibba HOM05D007543 ORTHO05D009555 1.1e-07 61.2 42 57.1
Migut.G00601 Erythranthe guttata HOM05D007543 ORTHO05D009555 2.0e-07 60.5 48 60.4
SalBow2G0410 Salvia bowleyana HOM05D007543 ORTHO05D009555 2.0e-07 60.5 50 56.0
HPP92_022683 Vanilla planifolia HOM05D007543 ORTHO05D009555 2.6e-07 60.1 131 31.3
FAN12G3210 Fragaria x ananassa HOM05D007543 ORTHO05D009555 3.3e-07 59.7 37 70.3
SalBow2G1589 Salvia bowleyana HOM05D007543 ORTHO05D009555 4.4e-07 59.3 60 50.0
unitig_0.g2249 Utricularia gibba HOM05D007543 ORTHO05D009555 6.3e-06 55.5 48 56.2


User provided reference genes

Program Settings