Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.0e-305 1051.6 529 100.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.5e-297 1024.2 539 96.7
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 4.6e-249 864.4 550 79.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 7.8e-249 863.6 550 80.4
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.5e-247 858.6 551 79.3
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 3.3e-247 858.2 568 77.5
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 7.3e-247 857.1 550 78.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 4.8e-246 854.4 550 76.9
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 6.2e-246 854.0 562 76.7
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 8.1e-246 853.6 550 77.6
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 1.1e-245 853.2 554 78.0
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.8e-245 852.4 549 78.3
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.2e-244 849.7 566 75.6
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.0e-244 849.0 550 78.2
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 9.9e-244 846.7 549 77.6
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 2.2e-243 845.5 594 73.7
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 3.8e-243 844.7 550 77.8
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 6.4e-243 844.0 556 76.6
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 8.4e-243 843.6 549 77.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 3.2e-242 841.6 578 74.7
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.1e-241 839.0 575 75.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 1.8e-240 835.9 573 73.6
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 6.7e-240 833.9 555 75.1
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-239 833.2 549 75.6
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 7.4e-239 830.5 565 75.4
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.3e-238 829.7 546 75.6
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 3.6e-238 828.2 550 75.5
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.8e-238 827.8 559 76.2
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 6.2e-238 827.4 556 75.7
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 9.0e-237 823.5 550 74.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 9.0e-237 823.5 597 70.5
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 9.0e-237 823.5 536 77.1
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 2.6e-236 822.0 549 75.0
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 5.8e-236 820.8 546 76.2
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 4.9e-235 817.8 577 72.4
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.9e-234 815.8 555 75.0
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.9e-234 815.8 533 76.4
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 4.2e-234 814.7 549 75.2
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.5e-234 814.3 550 74.2
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 9.3e-234 813.5 549 74.5
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.6e-233 812.8 549 74.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 2.7e-233 812.0 559 74.4
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 4.6e-233 811.2 549 73.8
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 6.0e-233 810.8 549 74.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.8e-232 809.3 549 74.3
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 3.9e-232 808.1 535 76.8
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 3.9e-232 808.1 532 76.5
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.5e-231 805.4 551 74.2
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 9.6e-231 803.5 549 74.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.3e-230 803.1 551 74.0
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.3e-230 803.1 555 73.0
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.1e-229 800.0 549 74.1
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.4e-229 799.7 596 70.3
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 1.8e-229 799.3 536 75.0
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 3.1e-229 798.5 554 72.7
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.2e-228 796.6 576 72.6
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.3e-227 793.1 533 76.2
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.7e-227 792.7 587 69.5
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.4e-226 789.6 536 73.7
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 4.2e-226 788.1 546 73.6
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 9.3e-226 786.9 473 82.5
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 3.5e-225 785.0 520 76.9
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 4.6e-225 784.6 517 75.0
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.3e-224 783.1 500 77.2
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 3.0e-224 781.9 483 79.1
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.1e-223 780.0 515 77.3
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 1.4e-221 773.1 527 74.8
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.5e-220 769.6 489 77.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.5e-220 769.6 665 62.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 3.4e-220 768.5 535 71.8
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.9e-219 765.4 553 71.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 3.2e-218 761.9 522 73.6
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 4.2e-218 761.5 553 70.9
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 1.6e-217 759.6 528 72.7
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 3.6e-217 758.4 492 76.2
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 6.1e-217 757.7 528 72.3
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.8e-216 756.1 498 75.3
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 6.7e-216 754.2 462 81.2
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.8e-213 746.1 538 70.6
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.0e-212 742.7 609 65.4
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.5e-210 735.7 514 73.7
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 4.4e-207 724.9 562 68.7
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 2.8e-206 722.2 465 76.3
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.5e-204 716.5 596 63.8
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 6.5e-203 711.1 550 67.5
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.4e-202 709.9 587 63.9
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.6e-201 705.3 443 78.6
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 1.5e-199 699.9 483 72.3
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.2e-196 690.3 488 70.3
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.9e-195 685.6 490 70.8
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 7.2e-194 681.0 536 66.2
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 6.1e-193 677.9 484 68.6
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 8.0e-193 677.6 497 71.0
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.6e-191 672.5 505 66.3
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.8e-190 669.1 440 75.0
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 7.5e-183 644.4 552 63.0
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 1.1e-181 640.6 485 63.7
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 4.2e-178 628.6 529 63.9
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.6e-177 626.7 434 71.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.2e-175 620.5 486 63.4
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 2.4e-173 612.8 505 60.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.1e-170 604.0 423 70.9
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 8.0e-169 597.8 340 88.5
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 4.4e-167 592.0 469 64.8
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 1.2e-164 583.9 446 69.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 5.2e-160 568.5 372 80.1
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-155 553.9 322 85.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 9.9e-151 537.7 491 55.6
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 6.6e-147 525.0 490 55.1
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 6.8e-144 515.0 322 79.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.1e-132 476.9 274 87.6
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.5e-122 443.4 481 44.5
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 2.1e-116 423.7 247 85.4
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-113 414.1 259 78.4
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 9.0e-104 381.7 345 61.2
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.4e-101 374.4 443 49.7
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 7.2e-101 372.1 228 81.1
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 1.7e-94 350.9 205 85.4
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 2.3e-83 313.9 183 84.7
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.8e-78 296.6 201 71.1
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.6e-74 283.9 476 36.8
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.4e-72 278.1 200 68.0
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 9.1e-72 275.4 201 68.7
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 3.2e-69 266.9 192 65.6
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.3e-54 218.4 125 78.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.1e-45 188.7 445 32.4
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 6.8e-43 179.5 249 46.2
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 2.6e-42 177.6 139 69.1
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 9.8e-42 175.6 181 51.9
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 6.0e-39 166.4 136 62.5
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.5e-37 161.0 340 35.0
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 6.8e-35 152.9 120 63.3
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 6.8e-35 152.9 120 63.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 5.8e-34 149.8 114 72.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 2.9e-33 147.5 123 61.8
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 2.6e-26 124.4 69 82.6
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 9.9e-26 122.5 148 52.0
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 1.7e-25 121.7 66 93.9
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.0e-22 112.5 86 66.3
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 8.7e-22 109.4 68 82.4
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.5e-21 108.6 138 48.6
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.5e-21 107.8 64 79.7
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.4e-19 102.1 78 65.4
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 4.0e-19 100.5 54 81.5
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 9.0e-19 99.4 57 87.7
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 2.0e-18 98.2 52 88.5
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 4.9e-17 93.6 103 56.3
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.6e-15 88.6 105 44.8
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 8.7e-14 82.8 58 74.1
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 1.4e-11 75.5 46 78.3
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 5.3e-11 73.6 61 59.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-10 72.4 88 46.6
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 8.4e-09 66.2 72 50.0
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 5.4e-08 63.5 51 60.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 1.3e-06 58.9 43 65.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 2.3e-06 58.2 51 56.9
BcaB06g27551 Brassica carinata HOM05D004684 ORTHO05D094740 6.7e-06 56.6 38 60.5
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 8.7e-06 56.2 38 68.4


User provided reference genes

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