Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 7.2e-193 677.2 368 100.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 5.3e-111 405.2 301 74.4
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.7e-104 383.6 307 68.4
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.8e-103 380.2 309 68.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 1.8e-103 380.2 298 69.8
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 4.5e-102 375.6 309 68.3
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 7.7e-102 374.8 302 69.2
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.3e-101 374.0 299 68.6
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 2.9e-101 372.9 298 69.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 5.0e-101 372.1 309 66.7
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.5e-101 371.3 298 69.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.4e-100 370.5 298 69.1
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 1.9e-100 370.2 300 68.0
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.2e-100 368.2 298 68.5
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 3.6e-99 365.9 298 67.8
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 8.0e-99 364.8 298 67.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.4e-98 364.0 302 66.2
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.8e-98 363.6 309 67.0
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 1.8e-98 363.6 310 66.1
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.3e-98 363.2 302 65.6
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.5e-97 360.5 298 66.4
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 2.0e-97 360.1 309 65.7
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 3.3e-97 359.4 309 66.3
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 4.4e-97 359.0 312 64.4
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 5.7e-97 358.6 299 67.9
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 7.4e-97 358.2 309 65.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 2.2e-96 356.7 298 66.1
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-96 356.7 298 66.1
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.8e-96 356.3 298 67.1
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 4.1e-95 352.4 310 65.8
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 5.3e-95 352.1 298 65.4
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 9.1e-95 351.3 316 62.7
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.1e-95 351.3 302 64.9
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 9.1e-95 351.3 299 64.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-94 350.5 297 66.7
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.5e-94 349.4 304 64.8
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.5e-94 349.0 298 64.4
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 5.9e-94 348.6 306 63.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-93 347.1 298 63.8
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.9e-93 346.3 306 62.4
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.0e-93 345.5 299 63.9
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 5.0e-93 345.5 298 63.8
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.9e-92 343.6 322 59.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.2e-92 342.4 323 60.7
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 4.2e-92 342.4 327 58.4
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-92 342.0 322 61.2
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.6e-91 340.5 321 62.9
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.6e-91 340.5 298 62.8
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 1.6e-91 340.5 304 63.2
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 2.1e-91 340.1 305 62.6
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.7e-91 339.7 305 62.0
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.7e-91 339.7 297 62.6
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 4.7e-91 339.0 298 62.8
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.0e-90 337.8 302 61.6
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.8e-90 337.0 305 61.3
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 2.3e-90 336.7 333 58.6
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 4.0e-90 335.9 323 59.1
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.2e-90 335.5 298 62.1
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 8.8e-90 334.7 306 60.8
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.5e-89 334.0 298 62.4
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 5.7e-89 332.0 302 61.3
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.8e-88 329.7 298 61.7
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.7e-88 329.3 343 56.6
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 6.3e-88 328.6 298 60.7
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 1.4e-87 327.4 298 60.4
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.8e-87 327.0 298 61.4
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 5.3e-87 325.5 298 60.7
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.2e-86 324.3 298 60.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.6e-86 323.9 303 58.7
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.0e-86 323.6 299 62.2
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.7e-86 323.2 306 58.8
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 3.5e-86 322.8 298 61.1
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 3.5e-86 322.8 298 61.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 3.5e-86 322.8 306 58.8
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.5e-86 322.4 298 62.4
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 5.9e-86 322.0 313 59.4
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.2e-85 320.1 307 60.3
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 8.5e-85 318.2 298 60.1
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 1.9e-84 317.0 298 60.4
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 3.2e-84 316.2 311 58.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 3.2e-84 316.2 372 50.8
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 5.5e-84 315.5 307 59.6
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 7.2e-84 315.1 323 56.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.2e-83 314.3 311 58.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.7e-83 313.2 320 55.9
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.4e-82 310.8 298 60.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-82 310.5 406 48.3
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-82 310.5 299 59.2
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 4.0e-82 309.3 307 57.0
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 5.2e-82 308.9 300 57.7
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 6.8e-82 308.5 334 55.1
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 6.8e-82 308.5 299 58.9
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 8.8e-82 308.1 258 65.9
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.5e-81 307.4 299 57.9
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 9.8e-81 304.7 332 55.4
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 7.0e-79 298.5 298 56.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 9.1e-79 298.1 311 57.6
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.2e-78 297.7 298 56.7
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 2.3e-77 293.5 244 67.6
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 5.0e-77 292.4 419 45.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.5e-76 290.0 298 56.7
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 8.0e-75 285.0 361 49.9
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.0e-74 284.6 243 65.4
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.3e-74 283.5 522 40.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.3e-74 283.5 258 60.9
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 5.2e-74 282.3 312 55.4
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.5e-73 280.8 299 56.9
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 6.3e-72 275.4 258 58.9
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.1e-71 272.7 298 54.7
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 5.4e-71 272.3 258 60.1
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 5.4e-71 272.3 316 53.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.6e-70 270.8 311 51.1
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 5.0e-69 265.8 312 49.7
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 5.6e-68 262.3 234 63.7
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-66 257.7 300 51.7
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.3e-64 251.1 253 58.9
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.7e-64 250.8 253 58.9
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.0e-61 241.5 309 46.3
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.6e-61 238.8 189 69.3
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 2.6e-57 226.9 238 56.3
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.9e-52 210.7 304 44.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 7.3e-52 208.8 302 43.7
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-48 196.4 189 61.4
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 2.3e-45 187.2 130 74.6
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 3.1e-42 176.8 185 56.2
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.1e-38 164.1 160 56.9
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 2.3e-37 160.6 321 36.4
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 3.0e-37 160.2 294 39.8
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.1e-35 154.1 125 67.2
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.8e-35 153.7 166 51.8
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.4e-34 151.4 193 51.3
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.0e-34 149.8 114 67.5
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 9.0e-34 148.7 325 34.5
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.4e-33 146.7 302 33.4
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.4e-31 141.4 291 34.0
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 3.2e-31 140.2 112 62.5
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 3.9e-29 133.3 90 72.2
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-26 124.4 110 62.7
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 3.1e-26 123.6 161 50.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 6.9e-26 122.5 139 50.4
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 8.4e-24 115.5 114 57.0
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.4e-23 114.0 76 76.3
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.4e-23 114.0 76 76.3
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.2e-22 111.7 99 61.6
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.3e-21 107.5 191 38.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 1.9e-20 104.4 105 56.2
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.3e-15 85.5 114 42.1
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.3e-13 81.6 86 52.3
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-12 77.4 149 37.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 3.4e-09 67.0 244 27.5
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 8.4e-08 62.4 73 50.7
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 1.4e-07 61.6 72 45.8
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 2.5e-07 60.8 84 44.0
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 2.5e-07 60.8 72 45.8
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-07 60.5 84 45.2
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 7.1e-07 59.3 42 69.0
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 6.1e-06 56.2 91 41.8
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 6.1e-06 56.2 91 41.8
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 7.9e-06 55.8 55 49.1
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 7.9e-06 55.8 55 49.1


User provided reference genes

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