Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.8e-102 375.6 232 100.0
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.2e-98 361.7 232 90.1
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 2.6e-47 193.0 197 53.8
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.1e-45 187.6 179 53.6
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 2.4e-45 186.4 194 52.6
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 1.2e-44 184.1 201 51.2
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.7e-44 183.0 180 51.7
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 2.7e-44 183.0 175 54.3
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 4.6e-44 182.2 179 54.7
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 6.0e-44 181.8 190 51.1
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 6.0e-44 181.8 199 47.2
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.0e-43 181.0 199 51.3
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 2.3e-43 179.9 181 54.1
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.0e-43 179.5 197 50.3
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.0e-43 179.5 181 51.9
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 1.1e-42 177.6 181 51.4
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.1e-42 177.6 179 53.6
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.5e-42 177.2 199 47.7
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.5e-42 177.2 180 50.6
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 2.5e-42 176.4 177 51.4
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-42 176.4 177 51.4
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.3e-42 176.0 177 51.4
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 7.4e-42 174.9 203 45.8
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.3e-41 174.1 176 52.3
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 1.3e-41 174.1 177 52.5
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.6e-41 173.7 176 52.3
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 2.8e-41 172.9 177 50.8
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.7e-41 172.6 198 49.0
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 3.7e-41 172.6 197 48.7
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 6.2e-41 171.8 197 49.7
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.2e-41 171.8 190 48.9
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 6.2e-41 171.8 196 47.4
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.1e-40 171.0 180 50.6
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 1.4e-40 170.6 177 52.0
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.8e-40 170.2 185 50.3
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 5.3e-40 168.7 183 49.2
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 9.0e-40 167.9 177 52.0
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.2e-39 167.5 182 51.1
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.6e-39 166.4 190 47.9
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 3.4e-39 166.0 191 48.7
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 4.5e-39 165.6 177 49.7
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 7.6e-39 164.9 177 49.7
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 7.6e-39 164.9 175 52.6
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 7.6e-39 164.9 192 45.8
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 7.6e-39 164.9 181 48.1
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 9.9e-39 164.5 175 50.3
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 1.3e-38 164.1 180 48.9
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 1.7e-38 163.7 186 49.5
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.2e-38 163.3 185 46.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 2.9e-38 162.9 182 49.5
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 2.9e-38 162.9 178 48.3
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.8e-38 162.5 177 49.7
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 3.8e-38 162.5 176 48.9
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.4e-38 161.8 175 50.3
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 6.4e-38 161.8 176 47.7
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 6.4e-38 161.8 175 50.9
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 6.4e-38 161.8 181 46.4
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 8.4e-38 161.4 181 47.0
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 8.4e-38 161.4 179 47.5
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 8.4e-38 161.4 176 50.6
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 1.1e-37 161.0 179 49.7
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.4e-37 160.6 176 47.2
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 1.9e-37 160.2 202 42.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.4e-37 159.8 175 49.1
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 4.2e-37 159.1 176 50.6
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 4.2e-37 159.1 191 46.6
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 7.1e-37 158.3 174 47.1
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 9.3e-37 157.9 172 50.0
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.2e-36 157.5 184 47.3
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.5e-36 156.0 172 50.0
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 4.6e-36 155.6 187 46.0
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 4.6e-36 155.6 202 41.6
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 4.6e-36 155.6 172 48.8
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 6.0e-36 155.2 205 44.9
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 6.0e-36 155.2 183 44.8
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.3e-35 154.1 189 46.0
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 1.3e-35 154.1 196 45.9
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 3.0e-35 152.9 181 48.1
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.9e-35 152.5 180 46.1
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.9e-35 152.5 206 44.2
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 3.9e-35 152.5 198 42.9
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 3.9e-35 152.5 206 39.3
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 6.7e-35 151.8 173 45.1
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 6.7e-35 151.8 182 45.6
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.7e-35 151.4 176 46.6
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.5e-34 150.6 183 46.4
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 1.9e-34 150.2 206 43.7
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.9e-34 150.2 187 43.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-34 149.8 206 43.2
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 3.3e-34 149.4 200 42.0
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 4.3e-34 149.1 191 44.5
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 4.3e-34 149.1 177 45.2
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 7.4e-34 148.3 182 45.1
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 7.4e-34 148.3 175 45.1
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 9.6e-34 147.9 136 53.7
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 9.6e-34 147.9 136 53.7
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 1.3e-33 147.5 232 37.1
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.1e-33 146.7 199 40.7
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 2.8e-33 146.4 192 40.1
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 3.7e-33 146.0 199 39.7
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 4.8e-33 145.6 200 41.5
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 8.2e-33 144.8 171 47.4
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.1e-32 144.4 180 43.9
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 1.1e-32 144.4 180 43.9
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.1e-32 144.4 180 43.9
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.1e-32 144.4 180 43.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 4.0e-32 142.5 187 41.7
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 4.0e-32 142.5 179 41.9
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 6.9e-32 141.7 188 44.1
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 6.9e-32 141.7 180 43.3
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.9e-32 141.7 164 47.6
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 6.9e-32 141.7 199 39.7
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 9.0e-32 141.4 195 41.5
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.5e-31 140.6 190 42.1
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 5.8e-31 138.7 173 43.4
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 7.6e-31 138.3 189 42.9
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 1.3e-30 137.5 185 45.4
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.7e-30 137.1 110 57.3
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 2.9e-30 136.3 201 43.3
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.9e-30 136.3 172 44.8
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 4.9e-30 135.6 196 41.8
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 6.5e-30 135.2 185 44.9
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 6.5e-30 135.2 144 47.2
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 8.4e-30 134.8 181 44.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 8.4e-30 134.8 185 44.9
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 8.4e-30 134.8 177 41.8
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.4e-30 134.8 242 36.8
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.4e-29 134.0 137 52.6
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 2.5e-29 133.3 181 44.8
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 4.2e-29 132.5 202 38.6
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 5.5e-29 132.1 137 48.2
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 3.0e-27 126.3 176 41.5
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 6.7e-27 125.2 210 31.9
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 6.7e-27 125.2 189 41.3
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 8.7e-27 124.8 139 48.9
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 1.9e-26 123.6 129 50.4
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.3e-25 120.9 191 36.6
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 1.6e-25 120.6 177 40.7
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 2.8e-25 119.8 191 41.4
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 5.3e-24 115.5 175 35.4
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 9.0e-24 114.8 177 40.1
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 5.9e-23 112.1 195 33.3
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 2.5e-21 106.7 182 36.3
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 2.5e-21 106.7 130 46.9
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 2.5e-21 106.7 129 45.7
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 1.4e-19 100.9 113 47.8
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 3.3e-18 96.3 177 31.1
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 3.3e-18 96.3 113 46.0
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 9.7e-18 94.7 74 63.5
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 2.8e-17 93.2 107 47.7
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 1.4e-16 90.9 72 63.9
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 9.1e-16 88.2 67 67.2
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.9e-13 80.5 69 53.6
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 9.4e-13 78.2 61 62.3
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 4.7e-12 75.9 59 66.1


User provided reference genes

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