Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 0.0e+00 1937.9 1009 100.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.7e-122 444.9 1142 34.3
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.0e-111 409.1 1120 33.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.4e-108 398.7 1063 33.8
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.4e-105 388.7 1206 31.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.9e-103 380.9 1078 33.0
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.2e-101 375.6 1076 32.9
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.0e-100 372.5 1112 32.8
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.4e-99 367.5 1155 32.2
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.0e-96 358.2 1230 31.5
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.9e-95 354.4 1067 32.2
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.6e-95 353.2 1202 30.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.4e-91 340.9 1134 30.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.0e-88 331.6 1214 28.9
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 3.5e-88 330.9 1122 29.2
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 3.5e-88 330.9 1080 31.6
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.7e-87 328.6 1152 30.3
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.0e-87 327.8 1158 29.4
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 5.0e-87 327.0 1065 30.9
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.3e-86 324.3 1099 30.7
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 3.6e-85 320.9 1141 30.6
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 8.0e-85 319.7 1220 29.5
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.4e-84 318.9 1113 29.7
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.5e-83 315.5 1049 31.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.4e-83 313.9 1148 29.5
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 7.5e-83 313.2 1220 29.3
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 1.2e-80 305.8 1085 31.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 4.6e-80 303.9 1069 30.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.7e-79 302.0 1146 30.0
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 3.9e-79 300.8 1084 31.1
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.6e-79 300.1 1078 32.0
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.6e-79 300.1 1110 29.7
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.5e-78 298.9 1071 31.2
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.3e-78 297.4 1066 32.4
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 7.3e-78 296.6 1089 30.1
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.1e-77 295.0 1124 29.1
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.8e-77 294.7 1335 28.4
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 3.6e-77 294.3 1130 28.7
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.2e-76 290.4 1091 30.1
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.8e-76 290.0 1043 31.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.0e-75 288.5 1269 28.4
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 4.4e-75 287.3 1029 30.4
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.7e-74 285.4 1052 29.1
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 2.2e-74 285.0 1056 30.6
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 7.1e-73 280.0 1196 29.6
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.1e-70 272.7 1173 29.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.5e-70 272.3 1115 28.9
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.1e-65 256.1 1052 28.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 2.4e-65 255.0 1131 27.2
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.2e-65 254.2 1032 31.5
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.4e-65 253.8 1057 28.0
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.1e-64 251.9 1041 28.1
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 4.6e-64 250.8 472 38.8
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.1e-62 246.1 618 33.2
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 9.6e-62 243.0 1042 28.7
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.6e-61 242.3 1031 28.2
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 4.7e-61 240.7 1065 26.2
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.0e-60 237.7 738 32.0
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.5e-59 235.7 1030 28.4
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.3e-58 232.6 1143 27.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 4.9e-58 230.7 1070 28.8
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.4e-57 229.2 973 30.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.3e-57 226.5 972 29.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.2e-56 226.1 1057 27.8
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.3e-53 216.1 1107 27.0
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-53 216.1 291 50.9
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 8.1e-53 213.4 1091 26.3
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.4e-52 211.8 383 40.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.8e-51 207.2 1098 26.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.8e-51 207.2 1098 26.2
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 3.8e-50 204.5 534 33.9
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-49 202.6 1127 26.2
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 1.4e-49 202.6 814 28.5
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 7.9e-48 196.8 852 29.2
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.0e-47 194.9 1041 26.3
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 6.7e-47 193.7 1034 28.5
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.1e-46 193.0 604 32.1
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 1.5e-46 192.6 801 29.2
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 3.3e-46 191.4 1104 26.2
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.3e-46 191.0 986 27.0
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 8.1e-45 186.8 723 31.0
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.3e-44 184.1 1017 26.9
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 8.4e-42 176.8 1232 24.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 8.4e-42 176.8 653 28.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.4e-41 176.0 176 57.4
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 1.4e-41 176.0 986 25.5
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.5e-41 175.3 983 25.9
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 2.3e-39 168.7 266 42.5
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.3e-39 168.7 236 45.8
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 7.9e-32 143.7 1018 25.0
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.1e-31 141.0 374 32.9
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 6.7e-31 140.6 1030 24.7
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 8.2e-29 133.7 144 50.0
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 4.1e-28 131.3 268 38.8
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.2e-27 129.8 1017 22.8
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 2.9e-26 125.2 814 26.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 5.0e-26 124.4 1022 22.4
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.1e-25 123.2 1082 25.1
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-25 122.9 162 45.1
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 3.2e-25 121.7 1035 24.3
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.2e-24 119.8 492 27.0
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.1e-24 117.5 1013 25.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 6.1e-24 117.5 266 35.3
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 7.9e-24 117.1 232 38.4
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.4e-23 116.3 1031 24.1
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 2.3e-23 115.5 997 24.3
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 8.8e-23 113.6 71 71.8
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 8.8e-23 113.6 1038 23.2
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 7.4e-22 110.5 1026 23.9
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 9.7e-22 110.2 123 52.0
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.3e-21 109.8 1033 23.3
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 1.3e-21 109.8 266 33.1
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.1e-20 106.7 1039 21.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.1e-20 104.8 126 47.6
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 3.4e-19 101.7 1021 22.6
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.7e-18 99.4 57 73.7
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 3.8e-18 98.2 1029 23.6
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 6.5e-18 97.4 121 46.3
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 7.2e-17 94.0 292 30.1
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 9.4e-17 93.6 127 44.1
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.2e-16 93.2 1026 23.4
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 4.7e-16 91.3 258 31.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 6.1e-16 90.9 159 38.4
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.9e-15 88.2 65 63.1
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 3.9e-15 88.2 115 43.5
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.1e-15 87.8 158 34.2
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 5.1e-15 87.8 149 35.6
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 6.7e-15 87.4 116 42.2
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 6.7e-15 87.4 116 42.2
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.0e-14 85.9 1033 22.7
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 2.6e-14 85.5 1036 21.8
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 4.8e-13 81.3 614 23.8
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 9.1e-12 77.0 161 34.2
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 9.1e-12 77.0 161 34.2
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.5e-11 76.3 383 25.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.6e-11 75.5 1021 22.9
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 2.6e-11 75.5 618 23.6
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 2.2e-10 72.4 45 71.1
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 5.0e-10 71.2 63 47.6
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.9e-09 69.3 58 60.3
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 3.2e-09 68.6 348 24.7
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.2e-08 66.6 37 64.9
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.7e-08 65.5 66 53.0
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 8.8e-07 60.5 44 54.5
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.5e-06 59.7 73 49.3


User provided reference genes

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