Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02599 Eucalyptus grandis HOM05D001326 ORTHO05D004163 8.1e-63 243.8 146 100.0
Eucgr.F00159 Eucalyptus grandis HOM05D001326 ORTHO05D004163 2.7e-34 149.1 120 67.5
Lj1g0010090 Lotus japonicus HOM05D001326 ORTHO05D004163 4.1e-22 108.6 122 48.4
Gohir.A01G121500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 2.0e-21 106.3 94 57.4
Cc10_g05200 Coffea canephora HOM05D001326 ORTHO05D004163 1.3e-20 103.6 122 47.5
Gorai.002G133200 Gossypium raimondii HOM05D001326 ORTHO05D004163 1.7e-20 103.2 94 56.4
THA.LOC104820501 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.7e-20 103.2 94 55.3
Cpa.g.sc21.138 Carica papaya HOM05D001326 ORTHO05D004163 2.2e-20 102.8 108 51.9
QL02p003371 Quercus lobata HOM05D001326 ORTHO05D004163 2.9e-20 102.4 105 52.4
Duzib041G0056 Durio zibethinus HOM05D001326 ORTHO05D004163 3.8e-20 102.1 94 55.3
Gohir.D01G109000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 3.8e-20 102.1 93 55.9
Duzib093G0342 Durio zibethinus HOM05D001326 ORTHO05D004163 6.5e-20 101.3 102 52.9
Thecc.08G095300 Theobroma cacao HOM05D001326 ORTHO05D004163 6.5e-20 101.3 115 46.1
Sc15g0005810 Simmondsia chinensis HOM05D001326 ORTHO05D004163 8.5e-20 100.9 102 51.0
VMungo1309G2681 Vigna mungo HOM05D001326 ORTHO05D004163 8.5e-20 100.9 92 53.3
THA.LOC104814178 Tarenaya hassleriana HOM05D001326 ORTHO05D004163 1.4e-19 100.1 112 46.4
CiPaw.16G035200 Carya illinoinensis HOM05D001326 ORTHO05D004163 1.9e-19 99.8 104 50.0
Nitab4.5_0000569g0170 Nicotiana tabacum HOM05D001326 ORTHO05D004163 1.9e-19 99.8 104 49.0
Peaxi162Scf00219g00123 Petunia axillaris HOM05D001326 ORTHO05D004163 1.9e-19 99.8 133 38.3
CANSAT25G2642 Cannabis sativa HOM05D001326 ORTHO05D004163 2.5e-19 99.4 118 43.2
Sc15g0005510 Simmondsia chinensis HOM05D001326 ORTHO05D004163 2.5e-19 99.4 102 50.0
Nn1g04667 Nelumbo nucifera HOM05D001326 ORTHO05D004163 3.2e-19 99.0 110 50.9
Ciclev10002480m.g Citrus clementina HOM05D001326 ORTHO05D004163 4.2e-19 98.6 127 43.3
Gohir.D05G210000 Gossypium hirsutum HOM05D001326 ORTHO05D004163 4.2e-19 98.6 106 49.1
Gorai.009G216400 Gossypium raimondii HOM05D001326 ORTHO05D004163 4.2e-19 98.6 106 49.1
Actinidia38087 Actinidia chinensis HOM05D001326 ORTHO05D004163 5.5e-19 98.2 107 51.4
Prupe.1G429000 Prunus persica HOM05D001326 ORTHO05D004163 5.5e-19 98.2 109 45.9
Rhsim06G0057100 Rhododendron simsii HOM05D001326 ORTHO05D004163 5.5e-19 98.2 136 44.1
Solyc04g078380.3 Solanum lycopersicum HOM05D001326 ORTHO05D004163 5.5e-19 98.2 110 45.5
Atru.chr13.770 Acer truncatum HOM05D001326 ORTHO05D004163 7.2e-19 97.8 93 50.5
Manes.18G042600 Manihot esculenta HOM05D001326 ORTHO05D004163 7.2e-19 97.8 115 46.1
Sed0004426 Sechium edule HOM05D001326 ORTHO05D004163 7.2e-19 97.8 94 51.1
PGSC0003DMG400003309 Solanum tuberosum HOM05D001326 ORTHO05D004163 7.2e-19 97.8 110 45.5
Phvul.009G068700 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 9.4e-19 97.4 90 52.2
SGA_v2.0_scaffold14G06954 Striga asiatica HOM05D001326 ORTHO05D004163 9.4e-19 97.4 152 38.8
Nitab4.5_0011741g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 1.2e-18 97.1 95 48.4
ClCG08G016240 Citrullus lanatus HOM05D001326 ORTHO05D004163 1.6e-18 96.7 91 52.7
Glyma.04G043200 Glycine max HOM05D001326 ORTHO05D004163 1.6e-18 96.7 115 41.7
Sopen04g031970 Solanum pennellii HOM05D001326 ORTHO05D004163 1.6e-18 96.7 110 44.5
SGA_v2.0_scaffold28G11812 Striga asiatica HOM05D001326 ORTHO05D004163 1.6e-18 96.7 137 39.4
TAR625G0613 Trochodendron aralioides HOM05D001326 ORTHO05D004163 1.6e-18 96.7 122 44.3
Cfa018037 Carpinus fangiana HOM05D001326 ORTHO05D004163 2.1e-18 96.3 90 55.6
MELO3C010830.2 Cucumis melo HOM05D001326 ORTHO05D004163 2.1e-18 96.3 105 48.6
MELO3C016792.2 Cucumis melo HOM05D001326 ORTHO05D004163 2.1e-18 96.3 103 48.5
DCAR_008838 Daucus carota HOM05D001326 ORTHO05D004163 2.1e-18 96.3 103 49.5
CAN.G1621.9 Capsicum annuum HOM05D001326 ORTHO05D004163 2.7e-18 95.9 118 40.7
CsaV3_4G034780 Cucumis sativus L. HOM05D001326 ORTHO05D004163 2.7e-18 95.9 103 47.6
Gohir.A05G206500 Gossypium hirsutum HOM05D001326 ORTHO05D004163 2.7e-18 95.9 106 48.1
Lalb_Chr14g0368421 Lupinus albus HOM05D001326 ORTHO05D004163 2.7e-18 95.9 93 49.5
Nitab4.5_0003035g0010 Nicotiana tabacum HOM05D001326 ORTHO05D004163 2.7e-18 95.9 95 47.4
Aa31LG5G18920 Aethionema arabicum HOM05D001326 ORTHO05D004163 3.6e-18 95.5 92 50.0
CAN.G107.48 Capsicum annuum HOM05D001326 ORTHO05D004163 4.7e-18 95.1 120 42.5
COL.COLO4_28576 Corchorus olitorius HOM05D001326 ORTHO05D004163 4.7e-18 95.1 112 46.4
Oeu016580.1 Olea europaea HOM05D001326 ORTHO05D004163 4.7e-18 95.1 94 50.0
Glyma.06G043700 Glycine max HOM05D001326 ORTHO05D004163 6.1e-18 94.7 93 48.4
CiPaw.15G049900 Carya illinoinensis HOM05D001326 ORTHO05D004163 8.0e-18 94.4 89 52.8
ClCG05G020300 Citrullus lanatus HOM05D001326 ORTHO05D004163 8.0e-18 94.4 103 46.6
CsaV3_2G026380 Cucumis sativus L. HOM05D001326 ORTHO05D004163 8.0e-18 94.4 105 47.6
Lalb_Chr22g0354841 Lupinus albus HOM05D001326 ORTHO05D004163 8.0e-18 94.4 99 51.5
SalBow6G1031 Salvia bowleyana HOM05D001326 ORTHO05D004163 8.0e-18 94.4 149 38.9
Actinidia08267 Actinidia chinensis HOM05D001326 ORTHO05D004163 1.0e-17 94.0 110 44.5
MD08G1091600 Malus domestica HOM05D001326 ORTHO05D004163 1.8e-17 93.2 123 39.8
MSTRG.25063 Avicennia marina HOM05D001326 ORTHO05D004163 2.3e-17 92.8 136 41.2
AL8G17650 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 3.0e-17 92.4 110 45.5
Haze_18087 Corylus avellana HOM05D001326 ORTHO05D004163 3.0e-17 92.4 90 54.4
CSS0008374 Camellia sinensis var. sinensis HOM05D001326 ORTHO05D004163 3.9e-17 92.0 105 44.8
Migut.N02754 Erythranthe guttata HOM05D001326 ORTHO05D004163 3.9e-17 92.0 126 42.1
Migut.O00599 Erythranthe guttata HOM05D001326 ORTHO05D004163 3.9e-17 92.0 126 42.1
Glyma.17G237500 Glycine max HOM05D001326 ORTHO05D004163 3.9e-17 92.0 95 52.6
MD15G1075600 Malus domestica HOM05D001326 ORTHO05D004163 3.9e-17 92.0 121 40.5
TWI36G1533 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 3.9e-17 92.0 90 52.2
AL47U10010 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 5.2e-17 91.7 110 44.5
Nn5g30440 Nelumbo nucifera HOM05D001326 ORTHO05D004163 5.2e-17 91.7 115 44.3
TAR381G1295 Trochodendron aralioides HOM05D001326 ORTHO05D004163 5.2e-17 91.7 122 40.2
Aqoxy5G01135 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 6.7e-17 91.3 108 45.4
AT1G47200 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 6.7e-17 91.3 122 42.6
AUR62044632 Chenopodium quinoa HOM05D001326 ORTHO05D004163 6.7e-17 91.3 107 44.9
Ah.05g167240 Amaranthus hybridus HOM05D001326 ORTHO05D004163 1.1e-16 90.5 124 41.9
BcaC08g42930 Brassica carinata HOM05D001326 ORTHO05D004163 1.1e-16 90.5 98 45.9
C06p01670 Brassica napus HOM05D001326 ORTHO05D004163 1.1e-16 90.5 98 45.9
BolC6t35298H Brassica oleracea HOM05D001326 ORTHO05D004163 1.1e-16 90.5 98 45.9
Carub.0001s3596 Capsella rubella HOM05D001326 ORTHO05D004163 1.1e-16 90.5 108 47.2
Thhalv10011812m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 1.1e-16 90.5 87 52.9
Ca_15925_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 1.5e-16 90.1 100 47.0
A10p06640 Brassica napus HOM05D001326 ORTHO05D004163 2.0e-16 89.7 99 44.4
BraA10t42922Z Brassica rapa HOM05D001326 ORTHO05D004163 2.0e-16 89.7 99 44.4
CARHR180920 Cardamine hirsuta HOM05D001326 ORTHO05D004163 2.0e-16 89.7 95 46.3
Nitab4.5_0004888g0020 Nicotiana tabacum HOM05D001326 ORTHO05D004163 2.0e-16 89.7 118 40.7
Sed0018271 Sechium edule HOM05D001326 ORTHO05D004163 2.6e-16 89.4 94 46.8
vmacro23170 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 2.6e-16 89.4 118 43.2
Ca_13253_v3 Cicer arietinum L. HOM05D001326 ORTHO05D004163 3.3e-16 89.0 98 43.9
Psat6g014240 Pisum sativum HOM05D001326 ORTHO05D004163 3.3e-16 89.0 94 46.8
Potri.002G122000 Populus trichocarpa HOM05D001326 ORTHO05D004163 3.3e-16 89.0 103 41.7
Potri.014G021900 Populus trichocarpa HOM05D001326 ORTHO05D004163 3.3e-16 89.0 97 46.4
AL1G53320 Arabidopsis lyrata HOM05D001326 ORTHO05D004163 4.4e-16 88.6 122 42.6
BcaB07g33854 Brassica carinata HOM05D001326 ORTHO05D004163 4.4e-16 88.6 98 45.9
Sed0026094 Sechium edule HOM05D001326 ORTHO05D004163 4.4e-16 88.6 91 51.6
AT5G43070 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 5.7e-16 88.2 93 46.2
CARHR036740 Cardamine hirsuta HOM05D001326 ORTHO05D004163 5.7e-16 88.2 90 46.7
Dinv35915 Davidia involucrata HOM05D000232 ORTHO05D004163 7.4e-16 87.8 117 41.0
Lalb_Chr23g0267351 Lupinus albus HOM05D001326 ORTHO05D004163 7.4e-16 87.8 100 48.0
MSTRG.22238 Avicennia marina HOM05D001326 ORTHO05D004163 1.3e-15 87.0 91 46.2
AUR62044370 Chenopodium quinoa HOM05D001326 ORTHO05D004163 1.3e-15 87.0 119 40.3
Glyma.14G086900 Glycine max HOM05D001326 ORTHO05D004163 1.3e-15 87.0 94 53.2
Medtr3g102500 Medicago truncatula HOM05D001326 ORTHO05D004163 1.3e-15 87.0 127 40.9
BcaC07g37236 Brassica carinata HOM05D001326 ORTHO05D004163 1.7e-15 86.7 93 47.3
A08p05940 Brassica napus HOM05D001326 ORTHO05D004163 1.7e-15 86.7 93 47.3
C08p06600 Brassica napus HOM05D001326 ORTHO05D004163 1.7e-15 86.7 93 47.3
BolC8t47503H Brassica oleracea HOM05D001326 ORTHO05D004163 1.7e-15 86.7 93 47.3
BraA08t32595Z Brassica rapa HOM05D001326 ORTHO05D004163 1.7e-15 86.7 93 47.3
Psat0s3164g0120 Pisum sativum HOM05D001326 ORTHO05D004163 1.7e-15 86.7 128 40.6
TPR.G25586 Trifolium pratense HOM05D001326 ORTHO05D004163 1.7e-15 86.7 121 42.1
Gorai.009G276700 Gossypium raimondii HOM05D001326 ORTHO05D004163 2.2e-15 86.3 121 43.0
Medtr1g018710 Medicago truncatula HOM05D001326 ORTHO05D004163 2.2e-15 86.3 97 44.3
Sabra02G0095900 Salix brachista HOM05D001326 ORTHO05D004163 2.2e-15 86.3 99 44.4
BcaB04g17546 Brassica carinata HOM05D001326 ORTHO05D004163 2.8e-15 85.9 87 49.4
Hma1.2p1_0634F.1_g192950 Hydrangea macrophylla HOM05D001326 ORTHO05D004163 4.8e-15 85.1 97 47.4
Actinidia22665 Actinidia chinensis HOM05D001326 ORTHO05D004163 6.3e-15 84.7 104 47.1
Thhalv10003281m.g Eutrema salsugineum HOM05D001326 ORTHO05D004163 6.3e-15 84.7 118 39.8
Carub.0008s0565 Capsella rubella HOM05D001326 ORTHO05D004163 8.2e-15 84.3 94 44.7
Lsat_1_v5_gn_6_109441 Lactuca sativa HOM05D001326 ORTHO05D004163 8.2e-15 84.3 109 43.1
Sabra14G0014500 Salix brachista HOM05D001326 ORTHO05D004163 8.2e-15 84.3 90 46.7
Sp1g34320 Schrenkiella parvula HOM05D001326 ORTHO05D004163 8.2e-15 84.3 112 42.9
TWI09G1274 Tripterygium wilfordii HOM05D001326 ORTHO05D004163 8.2e-15 84.3 128 41.4
Dinv39258 Davidia involucrata HOM05D001326 ORTHO05D004163 1.1e-14 84.0 103 43.7
Phvul.001G025400 Phaseolus vulgaris HOM05D001326 ORTHO05D004163 1.1e-14 84.0 95 46.3
EL10As7g23801 Beta vulgaris HOM05D001326 ORTHO05D004163 1.4e-14 83.6 129 38.0
Oeu036969.1 Olea europaea HOM05D001326 ORTHO05D004163 1.4e-14 83.6 121 38.0
Lj4P764T7 Lonicera japonica HOM05D001326 ORTHO05D004163 1.8e-14 83.2 71 56.3
HPP92_004637 Vanilla planifolia HOM05D001326 ORTHO05D004163 2.4e-14 82.8 121 43.0
HanXRQChr05g0150481 Helianthus annuus HOM05D001326 ORTHO05D004163 4.1e-14 82.0 98 44.9
FAN24G1427 Fragaria x ananassa HOM05D001326 ORTHO05D004163 5.3e-14 81.6 104 44.2
Gohir.D05G264900 Gossypium hirsutum HOM05D001326 ORTHO05D004163 5.3e-14 81.6 121 43.0
FAN15G1104 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.2e-13 80.5 104 43.3
FAN20G2280 Fragaria x ananassa HOM05D001326 ORTHO05D004163 1.2e-13 80.5 101 46.5
FvH4_2g33670 Fragaria vesca HOM05D001326 ORTHO05D004163 2.0e-13 79.7 102 44.1
unitig_8.g5036 Utricularia gibba HOM05D001326 ORTHO05D004163 2.0e-13 79.7 97 42.3
DCAR_012800 Daucus carota HOM05D001326 ORTHO05D004163 4.5e-13 78.6 109 40.4
ECA246G0756 Erigeron canadensis HOM05D001326 ORTHO05D004163 4.5e-13 78.6 92 43.5
PGR031G2476 Punica granatum HOM05D001326 ORTHO05D004163 4.5e-13 78.6 94 42.6
RcHm_v2.0_Chr6g0308881 Rosa chinensis HOM05D001326 ORTHO05D004163 7.7e-13 77.8 95 43.2
Zm00001eb007170 Zea mays HOM05D001326 ORTHO05D004163 1.0e-12 77.4 116 44.0
Lj5g0001031 Lotus japonicus HOM05D001326 ORTHO05D004163 1.7e-12 76.6 104 39.4
HPP92_007849 Vanilla planifolia HOM05D001326 ORTHO05D004163 1.7e-12 76.6 96 40.6
PSO675G1014 Papaver somniferum HOM05D001326 ORTHO05D004163 2.2e-12 76.3 108 39.8
FAN27G3472 Fragaria x ananassa HOM05D001326 ORTHO05D004163 2.9e-12 75.9 96 42.7
unitig_26.g9808 Utricularia gibba HOM05D001326 ORTHO05D004163 3.8e-12 75.5 93 41.9
PSO541G2388 Papaver somniferum HOM05D001326 ORTHO05D004163 6.5e-12 74.7 105 40.0
Zm00001eb400520 Zea mays HOM05D001326 ORTHO05D004163 6.5e-12 74.7 95 44.2
ATR0205G017 Amborella trichopoda HOM05D001326 ORTHO05D004163 8.5e-12 74.3 113 39.8
VMungo0647G1866 Vigna mungo HOM05D001326 ORTHO05D004163 1.1e-11 73.9 90 44.4
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 3.2e-11 72.4 74 50.0
Manes.12G114500 Manihot esculenta HOM05D001326 ORTHO05D004163 3.2e-11 72.4 91 37.4
unitig_578.g16543 Utricularia gibba HOM05D001326 ORTHO05D004163 4.2e-11 72.0 113 36.3
Aqoxy6G02840 Aquilegia oxysepala HOM05D001326 ORTHO05D004163 7.2e-11 71.2 106 36.8
HPP92_023698 Vanilla planifolia HOM05D001326 ORTHO05D004163 7.2e-11 71.2 102 43.1
Sp2g07850 Schrenkiella parvula HOM05D001326 ORTHO05D004163 1.6e-10 70.1 84 44.0
Zm00001eb215760 Zea mays HOM05D001326 ORTHO05D004163 4.7e-10 68.6 113 38.1
Zm00001eb243250 Zea mays HOM05D001326 ORTHO05D004163 4.7e-10 68.6 113 38.1
vmacro23334 Vaccinium macrocarpon HOM05D001326 ORTHO05D004163 6.1e-10 68.2 56 60.7
Zm00001eb326490 Zea mays HOM05D001326 ORTHO05D004163 6.1e-10 68.2 102 42.2
Zm00001eb339210 Zea mays HOM05D001326 ORTHO05D004163 8.0e-10 67.8 95 41.1
Actinidia33349 Actinidia chinensis HOM05D001326 ORTHO05D004163 1.0e-09 67.4 102 38.2
Os03g0209000 Oryza sativa ssp. japonica HOM05D001326 ORTHO05D004163 1.8e-09 66.6 94 44.7
MBI16_g04493_MAGBIO Magnolia biondii HOM05D001326 ORTHO05D004163 3.0e-09 65.9 122 36.1
Zm00001eb314640 Zea mays HOM05D001326 ORTHO05D004163 5.2e-09 65.1 95 40.0
Lsat_1_v5_gn_1_23021 Lactuca sativa HOM05D001326 ORTHO05D004163 8.8e-09 64.3 98 39.8
CANSAT01G2404 Cannabis sativa HOM05D001326 ORTHO05D004163 5.7e-08 61.6 115 36.5
SEGI_33127 Sequoiadendron giganteum HOM05D001326 ORTHO05D004163 7.5e-08 61.2 109 37.6
unitig_8.g3368 Utricularia gibba HOM05D001326 ORTHO05D004163 2.8e-07 59.3 123 33.3
Carub.0006s2540 Capsella rubella HOM05D054086 ORTHO05D004163 8.2e-07 57.8 88 37.5
AT5G27940 Arabidopsis thaliana HOM05D001326 ORTHO05D004163 1.1e-06 57.4 89 32.6
PSO423G0289 Papaver somniferum HOM05D001326 ORTHO05D004163 4.1e-06 55.5 81 38.3
Sed0026283 Sechium edule HOM05D001326 ORTHO05D002471 4.1e-06 55.5 121 32.2
SEGI_37088 Sequoiadendron giganteum HOM05D001326 ORTHO05D002471 5.3e-06 55.1 109 35.8
Eucgr.H03559 Eucalyptus grandis HOM05D001326 ORTHO05D002471 7.0e-06 54.7 121 29.8
ClCG05G005290 Citrullus lanatus HOM05D001326 ORTHO05D002471 9.1e-06 54.3 124 29.0
Cc01_g19460 Coffea canephora HOM05D001326 ORTHO05D002471 9.1e-06 54.3 94 35.1


User provided reference genes

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