Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 9.8e-81 303.5 166 100.0
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 8.7e-21 104.4 166 42.2
TAR622G1131 Trochodendron aralioides HOM05D008070 ORTHO05D001888 3.3e-20 102.4 151 43.7
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 8.2e-19 97.8 131 41.2
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 1.1e-18 97.4 152 39.5
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 1.1e-18 97.4 132 42.4
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 4.1e-18 95.5 163 42.3
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 4.1e-18 95.5 163 42.3
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 4.1e-18 95.5 132 41.7
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 5.3e-18 95.1 155 38.7
Duzib251G0841 Durio zibethinus HOM05D008070 ORTHO05D001888 9.0e-18 94.4 156 41.0
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 2.0e-17 93.2 157 37.6
PSO017G3787 Papaver somniferum HOM05D020914 ORTHO05D023578 2.6e-17 92.8 176 36.9
PSO478G3987 Papaver somniferum HOM05D020914 ORTHO05D001888 2.6e-17 92.8 176 37.5
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 4.5e-17 92.0 166 40.4
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 4.5e-17 92.0 133 37.6
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 7.7e-17 91.3 157 36.9
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 1.3e-16 90.5 162 36.4
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 1.3e-16 90.5 163 38.0
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 2.9e-16 89.4 151 41.1
CANSAT01G1404 Cannabis sativa HOM05D008070 ORTHO05D001888 5.0e-16 88.6 134 38.1
TWI75G1444 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 8.5e-16 87.8 163 35.0
CDE07G0112 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 1.4e-15 87.0 148 34.5
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.9e-15 86.7 156 35.9
CDE06G2294 Ceratophyllum demersum HOM05D005742 ORTHO05D001888 2.5e-15 86.3 148 34.5
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 2.1e-14 83.2 156 38.5
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 2.7e-14 82.8 153 31.4
TWI36G0098 Tripterygium wilfordii HOM05D008070 ORTHO05D001888 4.6e-14 82.0 134 35.1
Sed0009222 Sechium edule HOM05D005742 ORTHO05D001888 1.8e-13 80.1 144 32.6
ATR1152G035 Amborella trichopoda HOM05D008070 ORTHO05D001888 5.1e-13 78.6 176 36.9
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 6.7e-13 78.2 152 35.5
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 8.8e-13 77.8 147 34.0
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 2.5e-12 76.3 133 36.1
Aa31LG4G10410 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.3e-12 75.5 128 35.2
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 4.3e-12 75.5 167 32.9
Thhalv10019249m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 4.3e-12 75.5 151 33.1
Prupe.1G249100 Prunus persica HOM05D008070 ORTHO05D001888 5.7e-12 75.1 128 37.5
AL2G29930 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 7.4e-12 74.7 156 34.0
AT1G70540 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 7.4e-12 74.7 156 34.0
Nn3g16774 Nelumbo nucifera HOM05D008070 ORTHO05D001888 7.4e-12 74.7 167 32.9
MBI10_g44381_MAGBIO Magnolia biondii HOM05D008070 ORTHO05D001888 2.8e-11 72.8 171 31.6
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 3.7e-11 72.4 146 33.6
BraA02t06717Z Brassica rapa HOM05D008070 ORTHO05D001888 3.7e-11 72.4 155 32.9
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 3.7e-11 72.4 146 33.6
Carub.0002s1726 Capsella rubella HOM05D008070 ORTHO05D001888 3.7e-11 72.4 156 34.0
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 8.2e-11 71.2 131 30.5
Sp5g25690 Schrenkiella parvula HOM05D008070 ORTHO05D001888 8.2e-11 71.2 128 34.4
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.1e-10 70.9 143 32.9
A02p16620 Brassica napus HOM05D008070 ORTHO05D001888 1.1e-10 70.9 155 32.3
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 1.8e-10 70.1 131 32.8
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 1.8e-10 70.1 162 32.1
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 1.8e-10 70.1 162 32.1
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 2.4e-10 69.7 147 32.7
BcaC03g15202 Brassica carinata HOM05D008070 ORTHO05D001888 2.4e-10 69.7 153 30.1
C02p27870 Brassica napus HOM05D008070 ORTHO05D001888 2.4e-10 69.7 153 30.1
BolC2t08833H Brassica oleracea HOM05D008070 ORTHO05D001888 2.4e-10 69.7 153 30.1
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 4.1e-10 68.9 131 31.3
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 4.1e-10 68.9 159 28.3
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 4.1e-10 68.9 131 29.8
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 5.3e-10 68.6 159 30.8
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 5.3e-10 68.6 132 32.6
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 6.9e-10 68.2 160 32.5
CARHR063750 Cardamine hirsuta HOM05D008070 ORTHO05D001888 6.9e-10 68.2 156 31.4
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 9.1e-10 67.8 155 31.6
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 9.1e-10 67.8 155 31.6
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 9.1e-10 67.8 155 31.6
Eucgr.H01005 Eucalyptus grandis HOM05D005742 ORTHO05D001888 9.1e-10 67.8 146 31.5
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 1.2e-09 67.4 132 31.8
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.2e-09 67.4 131 30.5
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.5e-09 67.0 147 32.0
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.5e-09 67.0 131 30.5
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 1.5e-09 67.0 131 31.3
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.5e-09 67.0 134 31.3
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 2.0e-09 66.6 133 33.1
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 2.6e-09 66.2 156 31.4
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 3.4e-09 65.9 130 32.3
Manes.05G004700 Manihot esculenta HOM05D008182 ORTHO05D001888 3.4e-09 65.9 157 28.0
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 4.5e-09 65.5 162 26.5
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 5.9e-09 65.1 124 33.1
unitig_749.g13364 Utricularia gibba HOM05D005742 ORTHO05D001888 5.9e-09 65.1 163 29.4
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 7.7e-09 64.7 162 25.9
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 7.7e-09 64.7 160 26.2
unitig_22.g6961 Utricularia gibba HOM05D005742 ORTHO05D001888 7.7e-09 64.7 153 30.1
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 1.0e-08 64.3 162 25.9
MELO3C011973.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.0e-08 64.3 168 31.0
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 1.0e-08 64.3 162 26.5
Ah.04g157100 Amaranthus hybridus HOM05D005742 ORTHO05D001888 1.3e-08 63.9 137 31.4
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 1.3e-08 63.9 124 33.1
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 1.3e-08 63.9 161 32.3
Duzib248G0935 Durio zibethinus HOM05D008070 ORTHO05D001888 1.7e-08 63.5 153 32.0
Sed0024894 Sechium edule HOM05D008070 ORTHO05D001888 1.7e-08 63.5 100 39.0
QL04p082907 Quercus lobata HOM05D010056 ORTHO05D001888 2.2e-08 63.2 150 29.3
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 2.9e-08 62.8 154 29.2
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 2.9e-08 62.8 154 29.2
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 2.9e-08 62.8 145 30.3
ClCG10G011490 Citrullus lanatus HOM05D005742 ORTHO05D001888 3.8e-08 62.4 145 26.9
MD16G1155100 Malus domestica HOM05D005742 ORTHO05D001888 3.8e-08 62.4 142 31.7
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 5.0e-08 62.0 157 29.9
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 6.5e-08 61.6 162 25.3
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 6.5e-08 61.6 152 30.9
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 8.5e-08 61.2 159 27.0
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 8.5e-08 61.2 141 31.2
CsaV3_4G001290 Cucumis sativus L. HOM05D005742 ORTHO05D001888 8.5e-08 61.2 157 26.1
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 8.5e-08 61.2 143 31.5
unitig_0.g2583 Utricularia gibba HOM05D005742 ORTHO05D001888 8.5e-08 61.2 148 29.7
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 1.1e-07 60.8 154 28.6
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 1.1e-07 60.8 141 31.2
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 1.1e-07 60.8 154 28.6
MELO3C017910.2 Cucumis melo HOM05D005742 ORTHO05D001888 1.9e-07 60.1 176 26.1
Manes.01G228700 Manihot esculenta HOM05D008182 ORTHO05D001888 1.9e-07 60.1 153 26.8
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 2.5e-07 59.7 141 30.5
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 2.5e-07 59.7 150 30.7
PGR083G2154 Punica granatum HOM05D008182 ORTHO05D001888 3.2e-07 59.3 142 32.4
Dinv15255 Davidia involucrata HOM05D009745 ORTHO05D011350 4.2e-07 58.9 154 31.8
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 5.5e-07 58.5 157 27.4
Lalb_Chr08g0232901 Lupinus albus HOM05D000036 ORTHO05D000441 7.2e-07 58.2 144 27.8
MD03G1299200 Malus domestica HOM05D005742 ORTHO05D001888 7.2e-07 58.2 181 29.3
Medtr4g124550 Medicago truncatula HOM05D000036 ORTHO05D000441 7.2e-07 58.2 157 28.7
SEGI_04981 Sequoiadendron giganteum HOM05D000036 ORTHO05D000095 7.2e-07 58.2 150 29.3
Aqoxy1G03527 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 9.4e-07 57.8 167 30.5
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 9.4e-07 57.8 152 27.6
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.2e-06 57.4 150 30.7
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 1.2e-06 57.4 150 30.7
Lj4A922T52 Lonicera japonica HOM05D000036 ORTHO05D000441 1.2e-06 57.4 157 31.2
Prupe.7G190500 Prunus persica HOM05D000036 ORTHO05D000441 1.2e-06 57.4 153 28.1
Aqoxy2G01248 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 1.6e-06 57.0 170 30.6
MSTRG.19423 Avicennia marina HOM05D000036 ORTHO05D000441 1.6e-06 57.0 145 29.7
Sed0000802 Sechium edule HOM05D008070 ORTHO05D001888 1.6e-06 57.0 127 29.1
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.6e-06 57.0 135 27.4
Atru.chr4.3013 Acer truncatum HOM05D005742 ORTHO05D001888 2.1e-06 56.6 113 31.9
Aqoxy3G02842 Aquilegia oxysepala HOM05D020914 ORTHO05D023578 2.1e-06 56.6 168 26.8
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 2.1e-06 56.6 130 32.3
Sed0001520 Sechium edule HOM05D005742 ORTHO05D001888 2.1e-06 56.6 133 24.1
SGA_v2.0_scaffold473G52104 Striga asiatica HOM05D005742 ORTHO05D001888 2.1e-06 56.6 151 29.1
AT1G02550 Arabidopsis thaliana HOM05D008182 ORTHO05D001888 2.7e-06 56.2 150 29.3
CANSAT25G2213 Cannabis sativa HOM05D005742 ORTHO05D001888 2.7e-06 56.2 144 28.5
Duzib168G0577 Durio zibethinus HOM05D000036 ORTHO05D000441 2.7e-06 56.2 158 29.7
PGR102G1887 Punica granatum HOM05D000036 ORTHO05D002265 2.7e-06 56.2 152 31.6
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 2.7e-06 56.2 145 29.7
THA.LOC104817455 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 2.7e-06 56.2 150 29.3
Thecc.09G068700 Theobroma cacao HOM05D000036 ORTHO05D000441 2.7e-06 56.2 158 29.7
Cc03_g00920 Coffea canephora HOM05D005742 ORTHO05D001888 3.6e-06 55.8 143 25.2
HPP92_009710 Vanilla planifolia HOM05D000001 ORTHO05D010338 3.6e-06 55.8 113 31.0
Dinv29548 Davidia involucrata HOM05D003146 ORTHO05D001819 4.7e-06 55.5 144 25.7
vmacro17074 Vaccinium macrocarpon HOM05D000036 ORTHO05D000441 4.7e-06 55.5 148 27.7
Gohir.A08G040400 Gossypium hirsutum HOM05D008182 ORTHO05D001888 6.1e-06 55.1 143 27.3
MBI19_g32873_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000095 6.1e-06 55.1 139 28.8
Rhsim05G0001600 Rhododendron simsii HOM05D000036 ORTHO05D000441 6.1e-06 55.1 148 27.7
Sed0002581 Sechium edule HOM05D000036 ORTHO05D000441 6.1e-06 55.1 141 29.8
AL4G46900 Arabidopsis lyrata HOM05D026554 ORTHO05D001888 7.9e-06 54.7 147 29.3
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 7.9e-06 54.7 141 27.7
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 7.9e-06 54.7 167 28.1
Gorai.004G050100 Gossypium raimondii HOM05D008182 ORTHO05D001888 7.9e-06 54.7 143 28.0
MBI19_g03227_MAGBIO Magnolia biondii HOM05D005742 ORTHO05D001888 7.9e-06 54.7 156 28.2
SGA_v2.0_scaffold21G09571 Striga asiatica HOM05D000036 ORTHO05D000441 7.9e-06 54.7 148 27.7


User provided reference genes

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