Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02512 Eucalyptus grandis HOM05D001815 ORTHO05D001830 2.0e-86 322.4 163 100.0
Eucgr.H02526 Eucalyptus grandis HOM05D001815 ORTHO05D001830 1.7e-53 213.0 166 67.5
Eucgr.H02523 Eucalyptus grandis HOM05D001815 ORTHO05D001830 6.5e-53 211.1 166 68.7
TWI18G0850 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 1.4e-31 140.2 159 50.3
Dinv15251 Davidia involucrata HOM05D001815 ORTHO05D001830 7.7e-30 134.4 170 50.0
Manes.12G025100 Manihot esculenta HOM05D001815 ORTHO05D001830 2.3e-29 132.9 167 48.5
Atru.chr11.2089 Acer truncatum HOM05D001815 ORTHO05D001830 8.6e-29 131.0 163 44.8
Potri.010G044200 Populus trichocarpa HOM05D001815 ORTHO05D001830 1.1e-28 130.6 168 45.2
Medtr8g069755 Medicago truncatula HOM05D001815 ORTHO05D001830 1.5e-28 130.2 165 47.9
GSVIVG01013808001 Vitis vinifera HOM05D001815 ORTHO05D001830 2.5e-28 129.4 161 46.0
FvH4_4g25810 Fragaria vesca HOM05D001815 ORTHO05D001830 7.2e-28 127.9 156 44.2
FAN12G2775 Fragaria x ananassa HOM05D001815 ORTHO05D001830 7.2e-28 127.9 156 44.2
QL03p058681 Quercus lobata HOM05D001815 ORTHO05D001830 7.2e-28 127.9 172 44.8
CiPaw.05G184700 Carya illinoinensis HOM05D001815 ORTHO05D001830 1.2e-27 127.1 172 44.2
FAN07G2830 Fragaria x ananassa HOM05D001815 ORTHO05D001830 1.6e-27 126.7 156 46.2
Hma1.2p1_0160F.1_g071190 Hydrangea macrophylla HOM05D001815 ORTHO05D001830 2.8e-27 125.9 170 47.1
DCAR_031130 Daucus carota HOM05D001815 ORTHO05D001830 3.6e-27 125.6 157 43.9
Cfa009192 Carpinus fangiana HOM05D001815 ORTHO05D001830 4.7e-27 125.2 167 44.3
FAN22G0795 Fragaria x ananassa HOM05D001815 ORTHO05D001830 4.7e-27 125.2 156 45.5
Gohir.D02G160300 Gossypium hirsutum HOM05D001815 ORTHO05D001830 6.1e-27 124.8 175 44.6
FAN12G3782 Fragaria x ananassa HOM05D001815 ORTHO05D001830 8.0e-27 124.4 156 43.6
Ciclev10032742m.g Citrus clementina HOM05D001815 ORTHO05D001830 1.8e-26 123.2 166 44.6
Gorai.005G180400 Gossypium raimondii HOM05D001815 ORTHO05D001830 5.2e-26 121.7 171 44.4
Rhsim12G0041900 Rhododendron simsii HOM05D001815 ORTHO05D001830 5.2e-26 121.7 169 47.9
Lj4g0000421 Lotus japonicus HOM05D001815 ORTHO05D001830 6.8e-26 121.3 165 47.3
Haze_12226 Corylus avellana HOM05D001815 ORTHO05D001830 1.2e-25 120.6 158 45.6
Duzib268G1725 Durio zibethinus HOM05D001815 ORTHO05D001830 1.2e-25 120.6 170 46.5
Prupe.1G248800 Prunus persica HOM05D001815 ORTHO05D001830 1.5e-25 120.2 150 43.3
Nn3g16770 Nelumbo nucifera HOM05D001815 ORTHO05D001830 2.0e-25 119.8 162 44.4
Psat4g119040 Pisum sativum HOM05D001815 ORTHO05D001830 2.0e-25 119.8 165 44.2
Manes.13G026700 Manihot esculenta HOM05D001815 ORTHO05D001830 2.6e-25 119.4 166 43.4
Gohir.A03G137200 Gossypium hirsutum HOM05D001815 ORTHO05D001830 4.4e-25 118.6 172 43.6
Oeu038613.1 Olea europaea HOM05D001815 ORTHO05D001830 4.9e-24 115.2 163 41.1
CiPaw.06G069300 Carya illinoinensis HOM05D001815 ORTHO05D001830 6.3e-24 114.8 176 43.2
Sed0005640 Sechium edule HOM05D001815 ORTHO05D001830 8.3e-24 114.4 162 46.3
TAR374G0998 Trochodendron aralioides HOM05D001815 ORTHO05D001830 1.1e-23 114.0 163 42.9
vmacro01142 Vaccinium macrocarpon HOM05D001815 ORTHO05D001830 1.1e-23 114.0 169 45.6
Nn4g22677 Nelumbo nucifera HOM05D001815 ORTHO05D001830 1.4e-23 113.6 174 41.4
Thecc.02G256400 Theobroma cacao HOM05D001815 ORTHO05D001830 1.4e-23 113.6 170 41.8
Aqoxy3G02837 Aquilegia oxysepala HOM05D001815 ORTHO05D001830 5.4e-23 111.7 159 46.5
Cc11_g15500 Coffea canephora HOM05D001815 ORTHO05D001830 5.4e-23 111.7 158 43.7
Phvul.003G063000 Phaseolus vulgaris HOM05D001815 ORTHO05D001830 5.4e-23 111.7 162 41.4
Glyma.18G142600 Glycine max HOM05D001815 ORTHO05D001830 7.0e-23 111.3 160 42.5
TPR.G23134 Trifolium pratense HOM05D001815 ORTHO05D001830 7.0e-23 111.3 156 42.3
QL10p008913 Quercus lobata HOM05D001815 ORTHO05D001830 9.2e-23 110.9 170 42.9
arahy.Tifrunner.gnm1.ann1.PI0W0W Arachis hypogaea HOM05D001815 ORTHO05D001830 1.6e-22 110.2 156 44.9
ClCG05G025590 Citrullus lanatus HOM05D001815 ORTHO05D001830 3.5e-22 109.0 170 42.4
PSO832G3044 Papaver somniferum HOM05D001815 ORTHO05D001830 4.5e-22 108.6 158 43.7
arahy.Tifrunner.gnm1.ann1.JB0GFM Arachis hypogaea HOM05D001815 ORTHO05D001830 5.9e-22 108.2 156 44.2
Dinv20628 Davidia involucrata HOM05D001815 ORTHO05D001830 1.7e-21 106.7 170 40.6
FvH4_3g29560 Fragaria vesca HOM05D001815 ORTHO05D001830 1.7e-21 106.7 166 41.6
FAN25G2969 Fragaria x ananassa HOM05D001815 ORTHO05D001830 1.7e-21 106.7 166 41.6
CANSAT01G1226 Cannabis sativa HOM05D001815 ORTHO05D001830 2.3e-21 106.3 175 41.1
PGSC0003DMG400018165 Solanum tuberosum HOM05D001815 ORTHO05D001830 2.3e-21 106.3 162 42.0
Solyc03g112650.3 Solanum lycopersicum HOM05D001815 ORTHO05D001830 3.9e-21 105.5 162 41.4
Atru.chr9.2522 Acer truncatum HOM05D001815 ORTHO05D001830 5.0e-21 105.1 167 41.9
CAN.G1166.25 Capsicum annuum HOM05D001815 ORTHO05D001830 5.0e-21 105.1 166 40.4
FAN21G3927 Fragaria x ananassa HOM05D001815 ORTHO05D001830 5.0e-21 105.1 162 42.0
Sopen03g031730 Solanum pennellii HOM05D001815 ORTHO05D001830 5.0e-21 105.1 162 41.4
CsaV3_5G031310 Cucumis sativus L. HOM05D001815 ORTHO05D001830 6.6e-21 104.8 170 42.4
Oeu016420.1 Olea europaea HOM05D001815 ORTHO05D001830 6.6e-21 104.8 162 42.6
Lalb_Chr05g0228321 Lupinus albus HOM05D001815 ORTHO05D001830 8.6e-21 104.4 160 41.9
GSVIVG01007699001 Vitis vinifera HOM05D001815 ORTHO05D001830 8.6e-21 104.4 170 40.6
VMungo0251G3175 Vigna mungo HOM05D001815 ORTHO05D001830 1.1e-20 104.0 162 38.3
MELO3C002283.2 Cucumis melo HOM05D001815 ORTHO05D001830 1.5e-20 103.6 162 42.0
MELO3C011971.2 Cucumis melo HOM05D001815 ORTHO05D001830 1.5e-20 103.6 162 41.4
Eucgr.B00246 Eucalyptus grandis HOM05D001815 ORTHO05D001830 1.5e-20 103.6 172 44.2
CsaV3_1G008680 Cucumis sativus L. HOM05D001815 ORTHO05D001830 1.9e-20 103.2 162 42.0
SGA_v2.0_scaffold90G27883 Striga asiatica HOM05D001815 ORTHO05D001830 3.3e-20 102.4 162 43.2
MBI10_g00721_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009545 4.3e-20 102.1 162 41.4
MD11G1160600 Malus domestica HOM05D001815 ORTHO05D001830 4.3e-20 102.1 166 39.8
Prupe.6G124100 Prunus persica HOM05D001815 ORTHO05D001830 4.3e-20 102.1 166 40.4
PGR083G0624 Punica granatum HOM05D001815 ORTHO05D001830 4.3e-20 102.1 167 43.1
Nitab4.5_0001207g0020 Nicotiana tabacum HOM05D001815 ORTHO05D007233 5.6e-20 101.7 162 40.1
Peaxi162Scf00089g01729 Petunia axillaris HOM05D001815 ORTHO05D001830 5.6e-20 101.7 162 40.7
Atru.chr2.444 Acer truncatum HOM05D001815 ORTHO05D001830 7.3e-20 101.3 166 41.0
Nitab4.5_0003229g0010 Nicotiana tabacum HOM05D001815 ORTHO05D001830 7.3e-20 101.3 162 39.5
RcHm_v2.0_Chr5g0054621 Rosa chinensis HOM05D001815 ORTHO05D001830 7.3e-20 101.3 166 39.2
CSS0009547 Camellia sinensis var. sinensis HOM05D001815 ORTHO05D001830 9.5e-20 100.9 162 39.5
ClCG01G013310 Citrullus lanatus HOM05D001815 ORTHO05D001830 9.5e-20 100.9 162 42.6
COL.COLO4_24236 Corchorus olitorius HOM05D001815 ORTHO05D001830 9.5e-20 100.9 118 47.5
CDE11G1000 Ceratophyllum demersum HOM05D001815 ORTHO05D001830 1.2e-19 100.5 159 39.6
DCAR_016473 Daucus carota HOM05D001815 ORTHO05D001830 1.2e-19 100.5 169 42.0
Rhsim12G0166300 Rhododendron simsii HOM05D001815 ORTHO05D001830 1.2e-19 100.5 162 39.5
Hund02763 Selenicereus undatus HOM05D001815 ORTHO05D001830 1.6e-19 100.1 162 40.1
Cpa.g.sc69.91 Carica papaya HOM05D001815 ORTHO05D001830 2.1e-19 99.8 165 40.6
EL10Ac5g10705 Beta vulgaris HOM05D001815 ORTHO05D001830 2.8e-19 99.4 162 40.7
Cc04_g12350 Coffea canephora HOM05D001815 ORTHO05D001830 3.6e-19 99.0 162 40.7
TWI14G0237 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 3.6e-19 99.0 166 41.0
MSTRG.23147 Avicennia marina HOM05D001815 ORTHO05D001830 4.7e-19 98.6 162 42.0
vmacro16627 Vaccinium macrocarpon HOM05D001815 ORTHO05D001830 1.4e-18 97.1 162 38.3
Manes.14G063400 Manihot esculenta HOM05D001815 ORTHO05D001830 1.8e-18 96.7 159 42.8
HPP92_008823 Vanilla planifolia HOM05D001815 ORTHO05D001830 1.8e-18 96.7 162 40.7
Haze_07545 Corylus avellana HOM05D001815 ORTHO05D001830 2.3e-18 96.3 163 40.5
Migut.O00126 Erythranthe guttata HOM05D001815 ORTHO05D001830 2.3e-18 96.3 157 40.1
Potri.015G080000 Populus trichocarpa HOM05D001815 ORTHO05D001830 2.3e-18 96.3 171 39.8
SalBow5G0430 Salvia bowleyana HOM05D001815 ORTHO05D001830 2.3e-18 96.3 163 38.0
ATR1152G007 Amborella trichopoda HOM05D001815 ORTHO05D001830 4.0e-18 95.5 162 37.7
Os01g0235300 Oryza sativa ssp. japonica HOM05D001815 ORTHO05D001830 4.0e-18 95.5 162 38.9
SalBow5G2273 Salvia bowleyana HOM05D001815 ORTHO05D001830 4.0e-18 95.5 163 38.0
AUR62008181 Chenopodium quinoa HOM05D001815 ORTHO05D001830 6.8e-18 94.7 162 39.5
AUR62028762 Chenopodium quinoa HOM05D001815 ORTHO05D001830 6.8e-18 94.7 162 39.5
Lsat_1_v5_gn_4_75660 Lactuca sativa HOM05D001815 ORTHO05D001830 6.8e-18 94.7 167 40.1
Manes.06G107400 Manihot esculenta HOM05D001815 ORTHO05D001830 6.8e-18 94.7 167 39.5
Sabra15G0104200 Salix brachista HOM05D001815 ORTHO05D001830 1.5e-17 93.6 171 38.6
MD13G1096900 Malus domestica HOM05D001815 ORTHO05D001830 2.0e-17 93.2 137 40.1
PSO063G0573 Papaver somniferum HOM05D001815 ORTHO05D001830 2.6e-17 92.8 195 34.9
Pp3c4_25180 Physcomitrium patens HOM05D001815 ORTHO05D001830 2.6e-17 92.8 161 36.0
HanXRQChr11g0348301 Helianthus annuus HOM05D001815 ORTHO05D001830 3.4e-17 92.4 167 40.1
Sed0017974 Sechium edule HOM05D001815 ORTHO05D001830 3.4e-17 92.4 162 38.9
Potri.012G088400 Populus trichocarpa HOM05D001815 ORTHO05D001830 5.8e-17 91.7 171 39.2
FAN17G2841 Fragaria x ananassa HOM05D001815 ORTHO05D001830 1.7e-16 90.1 145 40.0
FAN11G1837 Fragaria x ananassa HOM05D001815 ORTHO05D001830 8.3e-16 87.8 170 38.2
MBI16_g14600_MAGBIO Magnolia biondii HOM05D001815 ORTHO05D001830 1.4e-15 87.0 141 39.7
Phvul.003G202400 Phaseolus vulgaris HOM05D001815 ORTHO05D001830 1.4e-15 87.0 163 38.0
Pp3c26_4930 Physcomitrium patens HOM05D001815 ORTHO05D001830 1.4e-15 87.0 161 32.3
SMO351G0122 Selaginella moellendorffii HOM05D001815 ORTHO05D001830 1.9e-15 86.7 161 37.9
Glyma.17G087500 Glycine max HOM05D001815 ORTHO05D001830 2.4e-15 86.3 163 38.7
COL.COLO4_30103 Corchorus olitorius HOM05D001815 ORTHO05D001830 3.2e-15 85.9 162 39.5
Medtr4g105470 Medicago truncatula HOM05D001815 ORTHO05D001830 3.2e-15 85.9 164 37.8
Psat4g058800 Pisum sativum HOM05D005987 ORTHO05D007233 4.1e-15 85.5 164 38.4
Thecc.03G019100 Theobroma cacao HOM05D001815 ORTHO05D001830 4.1e-15 85.5 162 38.9
Ca_21941_v3 Cicer arietinum L. HOM05D001815 ORTHO05D001830 7.0e-15 84.7 162 36.4
VMungo1215G3420 Vigna mungo HOM05D001815 ORTHO05D001830 9.2e-15 84.3 163 37.4
arahy.Tifrunner.gnm1.ann1.S9A8HE Arachis hypogaea HOM05D001815 ORTHO05D001830 2.0e-14 83.2 163 35.6
Lj9A446T54 Lonicera japonica HOM05D001815 ORTHO05D001830 2.0e-14 83.2 197 32.5
Eucgr.K02822 Eucalyptus grandis HOM05D001815 ORTHO05D001830 2.7e-14 82.8 166 36.1
Zm00001eb119010 Zea mays HOM05D001815 ORTHO05D001830 2.7e-14 82.8 150 38.0
Duzib205G0136 Durio zibethinus HOM05D001815 ORTHO05D001830 7.8e-14 81.3 162 37.7
THA.LOC104799773 Tarenaya hassleriana HOM05D001815 ORTHO05D001830 1.3e-13 80.5 154 38.3
Gohir.A03G089700 Gossypium hirsutum HOM05D001815 ORTHO05D001830 1.7e-13 80.1 162 38.9
TPR.G37498 Trifolium pratense HOM05D001815 ORTHO05D001830 1.7e-13 80.1 155 39.4
arahy.Tifrunner.gnm1.ann1.4X60UW Arachis hypogaea HOM05D001815 ORTHO05D001830 5.0e-13 78.6 163 35.0
CiPaw.11G023300 Carya illinoinensis HOM05D001815 ORTHO05D001830 5.0e-13 78.6 200 32.0
Gorai.005G135400 Gossypium raimondii HOM05D001815 ORTHO05D001830 5.0e-13 78.6 162 38.3
Ciclev10022174m.g Citrus clementina HOM05D001815 ORTHO05D001830 6.6e-13 78.2 158 34.2
Gohir.D02G118100 Gossypium hirsutum HOM05D001815 ORTHO05D001830 2.5e-12 76.3 163 38.7
Lj4g0001037 Lotus japonicus HOM05D001815 ORTHO05D001830 2.5e-12 76.3 155 34.2
Cfa019168 Carpinus fangiana HOM05D001815 ORTHO05D001830 9.5e-12 74.3 142 38.0
TPR.G37579 Trifolium pratense HOM05D001815 ORTHO05D001830 9.5e-12 74.3 156 37.2
Lalb_Chr07g0182831 Lupinus albus HOM05D001815 ORTHO05D001830 1.6e-11 73.6 155 35.5
CAN.G375.89 Capsicum annuum HOM05D001815 ORTHO05D001830 8.0e-11 71.2 157 33.1
CAN.G375.90 Capsicum annuum HOM05D001815 ORTHO05D001830 8.0e-11 71.2 160 31.9
CBR_g48160 Chara braunii HOM05D001815 ORTHO05D001830 1.8e-10 70.1 154 35.7
AagrBONN_evm.TU.Sc2ySwM_228.4327 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.3e-10 69.7 167 34.1
SGA_v2.0_scaffold116G32227 Striga asiatica HOM05D001815 ORTHO05D001830 5.2e-10 68.6 162 35.2
AagrBONN_evm.TU.Sc2ySwM_368.1302 Anthoceros agrestis HOM05D001815 ORTHO05D001830 6.8e-10 68.2 157 31.2
Ciclev10022064m.g Citrus clementina HOM05D001815 ORTHO05D001830 6.8e-10 68.2 160 30.0
BcaB03g16022 Brassica carinata HOM05D001815 ORTHO05D001830 2.9e-08 62.8 157 24.8
RcHm_v2.0_Chr3g0465771 Rosa chinensis HOM05D001815 ORTHO05D001830 1.1e-07 60.8 132 34.8
TWI39G0478 Tripterygium wilfordii HOM05D001815 ORTHO05D001830 1.4e-07 60.5 154 27.3
CBR_g48158 Chara braunii HOM05D001815 ORTHO05D001830 1.9e-07 60.1 157 32.5
Glyma.15G248300 Glycine max HOM05D001815 ORTHO05D001830 1.9e-07 60.1 160 28.1
SGA_v2.0_scaffold73G24344 Striga asiatica HOM05D001815 ORTHO05D001830 1.9e-07 60.1 158 30.4
Hund02315 Selenicereus undatus HOM05D001815 ORTHO05D001830 3.2e-07 59.3 159 24.5
Nitab4.5_0001207g0030 Nicotiana tabacum HOM05D001815 ORTHO05D001830 5.4e-07 58.5 89 38.2
Sopen01g011720 Solanum pennellii HOM05D001815 ORTHO05D001830 5.4e-07 58.5 126 37.3
arahy.Tifrunner.gnm1.ann1.SEKD5X Arachis hypogaea HOM05D001815 ORTHO05D001830 2.7e-06 56.2 155 27.1
arahy.Tifrunner.gnm1.ann1.QR9HB8 Arachis hypogaea HOM05D001815 ORTHO05D001830 3.5e-06 55.8 155 27.1
Sc03g0011030 Simmondsia chinensis HOM05D001815 ORTHO05D001830 4.6e-06 55.5 158 27.2


User provided reference genes

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