Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02490 Eucalyptus grandis HOM05D005524 ORTHO05D005392 2.5e-41 171.8 92 100.0
Thecc.01G412500 Theobroma cacao HOM05D005524 ORTHO05D005392 2.8e-13 78.6 60 73.3
Potri.001G268800 Populus trichocarpa HOM05D005524 ORTHO05D005392 1.4e-12 76.3 61 78.7
Potri.009G063600 Populus trichocarpa HOM05D005524 ORTHO05D005392 2.4e-12 75.5 61 77.0
TWI73G1008 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 9.2e-12 73.6 61 72.1
AT3G57690 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.6e-11 72.8 62 71.0
Sabra16G0164700 Salix brachista HOM05D005524 ORTHO05D005392 2.0e-11 72.4 61 75.4
CARHR167870 Cardamine hirsuta HOM05D005524 ORTHO05D005392 3.5e-11 71.6 62 69.4
ClCG10G012450 Citrullus lanatus HOM05D005524 ORTHO05D005392 3.5e-11 71.6 62 69.4
BcaB02g07583 Brassica carinata HOM05D005524 ORTHO05D005392 4.5e-11 71.2 62 69.4
BcaC07g40352 Brassica carinata HOM05D005524 ORTHO05D005392 4.5e-11 71.2 62 67.7
C08p33270 Brassica napus HOM05D005524 ORTHO05D005392 4.5e-11 71.2 62 67.7
BolC8t50929H Brassica oleracea HOM05D005524 ORTHO05D005392 4.5e-11 71.2 62 67.7
A09p50540 Brassica napus HOM05D005524 ORTHO05D005392 5.9e-11 70.9 62 67.7
Potri.006G056200 Populus trichocarpa HOM05D005524 ORTHO05D005392 5.9e-11 70.9 62 69.4
BcaB02g08300 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-11 70.5 62 67.7
BcaB02g08302 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-11 70.5 62 67.7
BcaC08g44863 Brassica carinata HOM05D005524 ORTHO05D005392 7.8e-11 70.5 62 69.4
BolC6t37629H Brassica oleracea HOM05D005524 ORTHO05D005392 7.8e-11 70.5 62 69.4
BcaC02g09954 Brassica carinata HOM05D005524 ORTHO05D005392 1.3e-10 69.7 62 67.7
A04p02980 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-10 69.7 62 67.7
C04p34740 Brassica napus HOM05D005524 ORTHO05D005392 1.3e-10 69.7 62 67.7
BolC4t25028H Brassica oleracea HOM05D005524 ORTHO05D005392 1.3e-10 69.7 62 67.7
BraA04t16021Z Brassica rapa HOM05D005524 ORTHO05D005392 1.3e-10 69.7 62 67.7
BraA09t40508Z Brassica rapa HOM05D005524 ORTHO05D005392 1.7e-10 69.3 62 66.1
TWI09G0988 Tripterygium wilfordii HOM05D005524 ORTHO05D005392 1.7e-10 69.3 61 68.9
A07p23640 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-10 68.9 62 67.7
C06p24770 Brassica napus HOM05D005524 ORTHO05D005392 2.3e-10 68.9 62 67.7
BraA07t30018Z Brassica rapa HOM05D005524 ORTHO05D005392 2.3e-10 68.9 62 67.7
BcaC07g40149 Brassica carinata HOM05D005524 ORTHO05D005392 3.8e-10 68.2 62 69.4
Sp5g04940 Schrenkiella parvula HOM05D005524 ORTHO05D005392 3.8e-10 68.2 63 68.3
CSS0022867 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 5.0e-10 67.8 60 66.7
CSS0036301 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.1e-09 66.6 60 65.0
AL5G39310 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 1.9e-09 65.9 63 66.7
CSS0030443 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.9e-09 65.9 61 67.2
CSS0011241 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 3.3e-09 65.1 60 65.0
Manes.07G004601 Manihot esculenta HOM05D005524 ORTHO05D005392 3.3e-09 65.1 63 65.1
Potri.016G052001 Populus trichocarpa HOM05D005524 ORTHO05D005392 3.3e-09 65.1 62 64.5
CSS0022323 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 4.3e-09 64.7 60 63.3
Haze_03228 Corylus avellana HOM05D000430 ORTHO05D000305 4.3e-09 64.7 69 65.2
Aa31LG10G12450 Aethionema arabicum HOM05D005524 ORTHO05D005392 5.6e-09 64.3 61 62.3
CSS0036543 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 7.3e-09 63.9 60 60.0
CANSAT80G2246 Cannabis sativa HOM05D005524 ORTHO05D005392 1.2e-08 63.2 64 67.2
CARHR137000 Cardamine hirsuta HOM05D005524 ORTHO05D005392 1.2e-08 63.2 62 64.5
Eucgr.A02403 Eucalyptus grandis HOM05D005524 ORTHO05D005392 1.2e-08 63.2 62 62.9
SHI24452 Sapria himalayana HOM05D005524 ORTHO05D005392 1.2e-08 63.2 57 66.7
AT2G41905 Arabidopsis thaliana HOM05D005524 ORTHO05D005392 1.6e-08 62.8 62 66.1
BcaNung07196 Brassica carinata HOM05D005524 ORTHO05D005392 1.6e-08 62.8 62 66.1
Carub.0004s2422 Capsella rubella HOM05D005524 ORTHO05D005392 1.6e-08 62.8 62 64.5
CsaV3_3G032220 Cucumis sativus L. HOM05D005524 ORTHO05D005392 1.6e-08 62.8 60 65.0
Atru.chr1.974 Acer truncatum HOM05D005524 ORTHO05D005392 2.1e-08 62.4 67 64.2
BcaB06g29217 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 64.5
BcaC02g07275 Brassica carinata HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
A03p23470 Brassica napus HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
A04p31910 Brassica napus HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
C04p69380 Brassica napus HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
BolC4t28440H Brassica oleracea HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
BraA03t11563Z Brassica rapa HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
BraA04t18649Z Brassica rapa HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
Dinv18091 Davidia involucrata HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 62.9
Sp4g24180 Schrenkiella parvula HOM05D005524 ORTHO05D005392 2.1e-08 62.4 62 66.1
Sed0016248 Sechium edule HOM05D005524 ORTHO05D005392 2.1e-08 62.4 64 60.9
Sed0007200 Sechium edule HOM05D005524 ORTHO05D005392 2.8e-08 62.0 64 60.9
CiPaw.13G003600 Carya illinoinensis HOM05D005524 ORTHO05D005392 3.6e-08 61.6 65 66.2
AL4G40250 Arabidopsis lyrata HOM05D005524 ORTHO05D005392 4.7e-08 61.2 62 64.5
Duzib106G1083 Durio zibethinus HOM05D005524 ORTHO05D005392 4.7e-08 61.2 63 61.9
Atru.chr1.1006 Acer truncatum HOM05D005524 ORTHO05D005392 6.1e-08 60.8 67 62.7
BcaB01g03426 Brassica carinata HOM05D005524 ORTHO05D005392 8.0e-08 60.5 62 62.9
Duzib093G2098 Durio zibethinus HOM05D005524 ORTHO05D005392 1.4e-07 59.7 63 60.3
Carub.0005s2453 Capsella rubella HOM05D005524 ORTHO05D005392 2.3e-07 58.9 63 61.9
ClCG09G004270 Citrullus lanatus HOM05D005524 ORTHO05D005392 2.3e-07 58.9 64 57.8
Hma1.2p1_0293F.1_g116270 Hydrangea macrophylla HOM05D005524 ORTHO05D005392 2.3e-07 58.9 65 60.0
Sed0003541 Sechium edule HOM05D005524 ORTHO05D005392 3.0e-07 58.5 64 57.8
Duzib128G1940 Durio zibethinus HOM05D005524 ORTHO05D005392 4.0e-07 58.2 65 56.9
COL.COLO4_23921 Corchorus olitorius HOM05D005524 ORTHO05D005392 5.2e-07 57.8 60 61.7
Lalb_Chr19g0132101 Lupinus albus HOM05D005524 ORTHO05D005392 5.2e-07 57.8 59 62.7
BcaC01g05321 Brassica carinata HOM05D005524 ORTHO05D005392 6.8e-07 57.4 62 61.3
C03p27990 Brassica napus HOM05D005524 ORTHO05D005392 6.8e-07 57.4 62 61.3
BolC3t15170H Brassica oleracea HOM05D005524 ORTHO05D005392 6.8e-07 57.4 62 61.3
Lalb_Chr12g0205751 Lupinus albus HOM05D005524 ORTHO05D005392 8.9e-07 57.0 63 55.6
Sed0014034 Sechium edule HOM05D005524 ORTHO05D005392 8.9e-07 57.0 64 56.2
CSS0022662 Camellia sinensis var. sinensis HOM05D005524 ORTHO05D005392 1.2e-06 56.6 60 58.3
Lalb_Chr01g0008091 Lupinus albus HOM05D005524 ORTHO05D005392 1.5e-06 56.2 59 66.1
MD02G1314100 Malus domestica HOM05D005524 ORTHO05D005392 1.5e-06 56.2 66 59.1
MBI01_g27620_MAGBIO Magnolia biondii HOM05D005524 ORTHO05D005392 2.0e-06 55.8 71 60.6
Prupe.2G010700 Prunus persica HOM05D005524 ORTHO05D005392 2.6e-06 55.5 70 58.6
Lalb_Chr03g0033981 Lupinus albus HOM05D005524 ORTHO05D005392 3.4e-06 55.1 59 64.4
Gorai.007G358400 Gossypium raimondii HOM05D008862 ORTHO05D005392 4.4e-06 54.7 65 56.9
Cc02_g27740 Coffea canephora HOM05D005524 ORTHO05D005392 5.7e-06 54.3 62 58.1
DCAR_029662 Daucus carota HOM05D005524 ORTHO05D005392 5.7e-06 54.3 67 59.7
Phvul.001G137100 Phaseolus vulgaris HOM05D005524 ORTHO05D005392 5.7e-06 54.3 57 52.6
Sed0023384 Sechium edule HOM05D005524 ORTHO05D005392 5.7e-06 54.3 50 62.0
Cc02_g27760 Coffea canephora HOM05D005524 ORTHO05D005392 7.5e-06 53.9 62 58.1
PSO384G3061 Papaver somniferum HOM05D005524 ORTHO05D005392 7.5e-06 53.9 63 55.6


User provided reference genes

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