Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.7e-300 1035.4 937 100.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.2e-80 304.3 205 80.0
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 8.6e-65 253.1 203 69.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.5e-64 252.3 200 68.0
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 7.3e-64 250.0 229 63.8
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 8.0e-63 246.5 206 69.4
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 8.0e-63 246.5 216 64.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.0e-62 246.1 219 63.5
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.4e-62 245.7 227 63.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-62 245.4 206 68.4
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-62 245.0 204 69.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 5.2e-62 243.8 205 68.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.2e-62 243.8 205 68.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 5.2e-62 243.8 228 61.4
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 8.9e-62 243.0 204 68.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 8.9e-62 243.0 226 62.8
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.0e-61 241.9 227 59.5
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 5.8e-61 240.4 226 61.5
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.8e-61 240.4 212 63.2
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 7.5e-61 240.0 222 61.3
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.3e-60 239.2 208 66.3
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.4e-59 235.0 225 59.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.2e-59 234.6 206 63.6
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.2e-58 232.6 220 61.4
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.0e-58 231.9 203 64.0
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.5e-58 231.1 228 58.8
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.3e-57 229.2 201 63.2
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.3e-57 228.4 228 57.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.1e-55 221.9 216 59.7
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 3.6e-55 221.1 223 59.2
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 8.1e-55 219.9 212 61.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.8e-54 218.8 227 55.9
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.0e-53 215.3 161 69.6
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 5.8e-53 213.8 219 54.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 9.8e-53 213.0 160 70.0
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.4e-51 209.1 204 60.8
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.4e-51 209.1 258 49.6
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.2e-50 206.1 270 50.7
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.6e-50 205.7 239 54.0
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 2.7e-50 204.9 260 50.4
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 3.5e-50 204.5 233 55.4
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 3.5e-50 204.5 218 59.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 3.5e-50 204.5 194 61.3
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 4.6e-50 204.1 274 49.6
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 4.6e-50 204.1 220 56.8
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.0e-49 203.0 204 58.3
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.3e-49 202.6 230 57.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.7e-49 202.2 200 60.0
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 3.0e-49 201.4 224 57.6
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.0e-49 201.4 200 58.5
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.0e-49 201.4 200 59.0
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.9e-49 201.1 147 72.8
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 6.6e-49 200.3 181 63.0
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 6.6e-49 200.3 300 47.0
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.5e-48 198.4 242 52.5
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.5e-48 198.4 242 52.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 3.3e-48 198.0 147 71.4
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 9.5e-48 196.4 201 59.2
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 9.5e-48 196.4 210 57.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 3.6e-47 194.5 211 56.9
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.7e-47 194.1 146 71.2
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-46 192.2 223 55.2
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 1.8e-46 192.2 223 55.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.8e-46 192.2 269 47.6
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-46 192.2 281 48.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.8e-46 192.2 148 69.6
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 3.1e-46 191.4 158 67.7
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 6.8e-46 190.3 201 59.2
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-45 189.5 219 55.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.5e-45 189.1 204 56.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 2.0e-45 188.7 158 66.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 7.6e-45 186.8 203 55.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.7e-44 185.7 203 53.7
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.2e-44 185.3 160 65.0
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-44 185.3 152 66.4
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.9e-44 184.9 274 46.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 3.8e-44 184.5 228 51.8
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.8e-44 184.5 152 65.8
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 6.4e-44 183.7 206 54.9
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.1e-43 183.0 221 53.4
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.4e-43 181.8 208 52.4
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.6e-42 179.1 282 46.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.1e-42 178.7 643 37.3
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 4.6e-42 177.6 132 68.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.0e-42 177.2 225 51.6
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.0e-42 177.2 145 67.6
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 1.7e-41 175.6 247 48.2
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.6e-41 173.7 221 49.3
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 6.6e-41 173.7 290 45.5
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 6.6e-41 173.7 212 53.8
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 8.6e-41 173.3 148 66.9
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 7.3e-40 170.2 218 50.5
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 9.6e-40 169.9 143 67.1
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.1e-39 166.8 120 72.5
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 1.8e-38 165.6 112 74.1
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.8e-38 165.6 220 48.2
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 2.4e-38 165.2 108 77.8
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.1e-38 164.9 100 80.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.1e-38 164.9 101 79.2
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 4.0e-38 164.5 233 48.1
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 8.9e-38 163.3 146 61.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 3.4e-37 161.4 118 68.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 5.8e-37 160.6 184 57.1
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.2e-36 158.7 134 67.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.8e-36 157.9 202 46.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 4.9e-36 157.5 215 50.7
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.4e-35 156.0 119 70.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.4e-35 155.2 191 48.2
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.4e-35 155.2 109 74.3
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.2e-35 154.5 172 50.6
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 2.1e-34 152.1 119 64.7
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.5e-34 151.4 132 63.6
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.3e-33 149.4 90 80.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 4.3e-32 144.4 137 59.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 5.6e-32 144.1 178 47.8
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 4.8e-31 141.0 144 56.9
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 1.4e-30 139.4 248 42.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.0e-30 137.9 228 45.2
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.0e-29 135.6 87 75.9
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.8e-29 134.0 92 76.1
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.3e-28 132.9 80 81.2
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 1.3e-28 132.9 202 49.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.2e-28 132.1 108 65.7
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-27 129.0 133 55.6
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 6.0e-26 124.0 233 37.8
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.3e-25 122.9 134 53.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.3e-25 122.1 109 60.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.1e-24 119.8 146 50.7
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.1e-24 119.8 146 50.7
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.1e-23 115.5 112 54.5
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.1e-22 113.2 147 49.0
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.0e-22 111.3 116 55.2
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 6.9e-22 110.5 116 55.2
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 9.0e-22 110.2 105 59.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.5e-21 107.8 100 62.0
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.9e-21 106.7 174 43.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 9.9e-21 106.7 104 57.7
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.3e-20 106.3 158 43.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.3e-20 106.3 109 56.9
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 105.9 107 57.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 105.9 106 53.8
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.7e-20 105.9 105 55.2
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.9e-20 105.1 102 52.0
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.9e-20 105.1 101 58.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.1e-19 103.2 154 42.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.1e-19 103.2 106 54.7
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.2e-18 99.8 100 58.0
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 7.9e-18 97.1 112 51.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 2.3e-17 95.5 105 46.7
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 5.6e-16 90.9 66 77.3
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.6e-16 90.1 126 46.8
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-15 89.7 52 78.8
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.0e-14 84.7 109 49.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.5e-13 82.8 111 43.2
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 3.4e-13 81.6 180 37.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 5.8e-13 80.9 99 44.4
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.2e-12 79.0 83 56.6
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 3.2e-11 75.1 145 35.2
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 7.1e-11 73.9 47 76.6
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.6e-10 72.8 67 55.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 4.3e-08 64.7 67 53.7
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 2.1e-07 62.4 607 32.8
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 1.8e-06 59.3 55 54.5
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 6.9e-06 57.4 64 46.9


User provided reference genes

Program Settings