Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 8.5e-84 313.5 148 100.0
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 2.0e-24 116.3 74 78.4
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 6.6e-20 101.3 74 68.9
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 8.6e-20 100.9 74 68.9
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.6e-20 100.9 74 68.9
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 8.6e-20 100.9 74 66.2
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 8.6e-20 100.9 74 67.6
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 1.1e-19 100.5 76 67.1
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-19 100.5 74 68.9
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-19 100.5 74 68.9
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.5e-19 100.1 76 71.1
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.3e-19 99.0 74 68.9
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 3.3e-19 99.0 74 68.9
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 4.3e-19 98.6 74 68.9
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 5.6e-19 98.2 76 68.4
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 9.5e-19 97.4 74 66.2
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 1.2e-18 97.1 74 66.2
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.2e-18 97.1 74 66.2
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.6e-18 96.7 74 64.9
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 3.6e-18 95.5 74 66.2
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.7e-18 95.1 78 67.9
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 6.2e-18 94.7 73 65.8
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 6.2e-18 94.7 74 64.9
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 6.2e-18 94.7 77 67.5
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.1e-17 94.0 57 78.9
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.1e-17 94.0 74 62.2
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.1e-17 94.0 92 53.3
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.1e-17 94.0 74 67.6
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 1.4e-17 93.6 74 62.2
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.4e-17 93.6 74 64.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.8e-17 93.2 74 63.5
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 1.8e-17 93.2 75 66.7
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.3e-17 92.8 73 65.8
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.3e-17 92.8 57 77.2
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 3.1e-17 92.4 72 66.7
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 3.1e-17 92.4 73 63.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 4.0e-17 92.0 57 78.9
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 4.0e-17 92.0 75 64.0
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 5.2e-17 91.7 74 60.8
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 5.2e-17 91.7 74 60.8
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 5.2e-17 91.7 73 63.0
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 5.2e-17 91.7 74 62.2
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 5.2e-17 91.7 74 63.5
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 5.2e-17 91.7 72 62.5
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 6.8e-17 91.3 75 68.0
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.8e-17 91.3 72 61.1
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 8.9e-17 90.9 74 59.5
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 8.9e-17 90.9 74 64.9
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 8.9e-17 90.9 74 62.2
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.2e-16 90.5 74 62.2
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 1.2e-16 90.5 74 62.2
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 1.2e-16 90.5 74 62.2
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 1.2e-16 90.5 74 64.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-16 90.1 74 60.8
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 1.5e-16 90.1 74 60.8
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.5e-16 90.1 74 62.2
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.0e-16 89.7 74 60.8
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.0e-16 89.7 75 62.7
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.0e-16 89.7 73 63.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 2.6e-16 89.4 74 59.5
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 2.6e-16 89.4 76 68.4
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.6e-16 89.4 75 64.0
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-16 89.0 74 58.1
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.4e-16 89.0 76 67.1
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 3.4e-16 89.0 75 64.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 4.4e-16 88.6 75 66.7
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 4.4e-16 88.6 74 66.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 4.4e-16 88.6 75 64.0
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.4e-16 88.6 61 72.1
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 5.8e-16 88.2 74 58.1
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 7.5e-16 87.8 75 58.7
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 7.5e-16 87.8 74 60.8
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 7.5e-16 87.8 73 64.4
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 7.5e-16 87.8 74 60.8
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 1.3e-15 87.0 75 61.3
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 1.7e-15 86.7 72 59.7
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.7e-15 86.7 52 78.8
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.7e-15 85.5 75 61.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 4.9e-15 85.1 75 56.0
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.9e-15 85.1 78 61.5
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.9e-15 85.1 75 65.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 6.4e-15 84.7 71 63.4
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 6.4e-15 84.7 75 61.3
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 8.3e-15 84.3 74 59.5
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 1.4e-14 83.6 75 62.7
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.4e-14 83.6 74 59.5
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.9e-14 83.2 72 58.3
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 3.2e-14 82.4 75 65.3
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 4.1e-14 82.0 75 58.7
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 4.1e-14 82.0 73 56.2
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 4.1e-14 82.0 73 58.9
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 5.4e-14 81.6 74 56.8
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 5.4e-14 81.6 75 57.3
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.1e-14 81.3 76 64.5
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 7.1e-14 81.3 74 62.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 9.2e-14 80.9 76 61.8
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 9.2e-14 80.9 61 68.9
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 1.2e-13 80.5 57 68.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.2e-13 80.5 66 56.1
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.2e-13 80.5 74 58.1
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.2e-13 80.5 75 54.7
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-13 80.1 57 68.4
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.6e-13 80.1 74 56.8
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 1.6e-13 80.1 74 56.8
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.6e-13 80.1 74 56.8
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.6e-13 80.1 74 60.8
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.6e-13 80.1 74 60.8
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.6e-13 80.1 76 63.2
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.6e-13 80.1 75 61.3
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 2.7e-13 79.3 74 56.8
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 2.7e-13 79.3 74 56.8
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 2.7e-13 79.3 74 56.8
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 2.7e-13 79.3 74 56.8
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 2.7e-13 79.3 74 56.8
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 2.7e-13 79.3 74 55.4
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 2.7e-13 79.3 64 64.1
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.5e-13 79.0 74 56.8
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 3.5e-13 79.0 74 56.8
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.6e-13 78.6 75 61.3
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 7.8e-13 77.8 57 64.9
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.0e-12 77.4 74 54.1
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.0e-12 77.4 73 54.8
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.3e-12 77.0 57 66.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 1.3e-12 77.0 57 66.7
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 1.3e-12 77.0 74 55.4
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.3e-12 77.0 74 52.7
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.7e-12 76.6 58 60.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.3e-12 76.3 51 72.5
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 3.9e-12 75.5 76 56.6
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 5.1e-12 75.1 81 48.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 8.6e-12 74.3 56 66.1
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.1e-11 73.9 56 67.9
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 1.5e-11 73.6 61 60.7
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.9e-11 73.2 56 64.3
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 3.3e-11 72.4 74 58.1
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.3e-11 72.0 56 66.1
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 5.6e-11 71.6 75 49.3
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 3.6e-10 68.9 51 62.7
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 8.1e-10 67.8 62 58.1
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.1e-09 67.4 62 59.7
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.4e-09 66.2 59 62.7
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 1.2e-08 63.9 71 59.2
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.2e-08 63.9 77 49.4
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 5.8e-08 61.6 79 45.6
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 5.8e-08 61.6 58 56.9


User provided reference genes

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