Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 3.8e-123 444.9 232 100.0
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 2.6e-63 246.1 232 56.5
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.4e-61 240.4 218 56.0
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 1.0e-59 234.2 232 55.2
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.1e-58 230.7 225 54.7
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 2.5e-58 229.6 233 52.4
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 3.3e-58 229.2 220 55.0
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 7.3e-58 228.0 220 52.7
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 9.6e-58 227.6 222 55.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-56 223.8 220 52.7
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 3.1e-56 222.6 225 54.2
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 3.1e-56 222.6 223 51.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.9e-56 221.5 220 50.9
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-55 220.3 233 48.9
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.5e-55 220.3 233 48.9
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.5e-55 220.3 227 51.1
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 2.0e-55 219.9 233 51.1
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 1.7e-54 216.9 224 50.4
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 1.1e-53 214.2 220 50.5
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 3.2e-53 212.6 228 47.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 3.2e-53 212.6 213 51.6
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 9.3e-53 211.1 220 52.3
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.7e-52 209.5 218 49.1
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 3.5e-52 209.1 228 47.8
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 4.6e-52 208.8 218 48.6
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.3e-51 206.5 218 48.6
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 3.9e-51 205.7 226 47.3
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 6.6e-51 204.9 208 50.5
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 3.3e-50 202.6 233 47.2
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 5.6e-50 201.8 224 49.6
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 4.8e-49 198.7 219 48.9
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 8.1e-49 198.0 219 48.9
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 3.1e-48 196.1 235 45.5
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 9.0e-48 194.5 223 47.1
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.5e-47 193.7 253 43.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 3.4e-47 192.6 229 44.1
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 4.5e-47 192.2 217 49.3
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.5e-47 192.2 218 45.9
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.3e-46 190.7 219 47.5
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.3e-46 190.7 226 46.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.9e-46 189.5 232 45.7
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 3.8e-46 189.1 213 45.1
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 3.8e-46 189.1 218 45.4
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.8e-46 189.1 208 49.0
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 3.8e-46 189.1 218 45.9
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.1e-45 187.6 218 45.4
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.4e-45 187.2 235 45.1
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 5.4e-45 185.3 218 46.3
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.6e-44 183.7 222 47.3
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.7e-44 183.0 218 46.8
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 4.6e-44 182.2 227 44.1
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 7.9e-44 181.4 244 44.3
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 1.3e-43 180.6 219 44.7
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.3e-43 180.6 242 42.1
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.9e-43 179.1 223 44.8
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 5.1e-43 178.7 219 44.7
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.5e-42 177.2 218 45.4
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.5e-42 177.2 219 39.7
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.9e-42 176.8 225 42.7
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.9e-42 176.8 228 43.9
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 2.5e-42 176.4 215 45.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 4.3e-42 175.6 220 41.4
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 9.6e-42 174.5 220 43.2
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 2.1e-41 173.3 248 41.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 6.2e-41 171.8 222 44.6
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 6.2e-41 171.8 222 44.6
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 6.2e-41 171.8 222 44.6
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.1e-40 171.0 245 42.9
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 1.4e-40 170.6 213 45.1
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 1.4e-40 170.6 213 45.1
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 2.4e-40 169.9 217 42.9
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 2.4e-40 169.9 254 43.7
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 9.0e-40 167.9 227 42.7
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 9.0e-40 167.9 216 43.5
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.5e-39 167.2 236 39.0
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.5e-39 165.6 213 42.7
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 5.8e-39 165.2 218 40.8
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.7e-38 163.7 220 43.2
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 2.2e-38 163.3 227 43.6
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 2.2e-38 163.3 187 46.5
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 4.9e-38 162.2 213 43.7
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 4.9e-38 162.2 216 43.1
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 1.1e-37 161.0 229 39.7
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.4e-37 160.6 229 39.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 2.4e-37 159.8 217 41.9
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 3.2e-37 159.5 212 44.8
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 4.2e-37 159.1 219 40.2
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 4.6e-36 155.6 218 42.7
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 4.6e-36 155.6 254 37.8
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 6.0e-36 155.2 220 41.4
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 6.0e-36 155.2 245 41.2
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.3e-35 154.1 243 37.9
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 1.8e-35 153.7 206 43.2
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 2.3e-35 153.3 233 39.1
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 2.3e-35 153.3 223 40.8
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 3.0e-35 152.9 224 41.1
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 3.0e-35 152.9 184 46.2
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 5.1e-35 152.1 222 38.7
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 8.7e-35 151.4 206 41.3
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 5.6e-34 148.7 216 40.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.6e-33 147.1 175 48.0
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 2.1e-33 146.7 219 41.1
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 6.2e-33 145.2 214 41.1
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 8.2e-33 144.8 222 39.6
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-32 144.4 210 41.4
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 3.1e-32 142.9 201 40.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 4.0e-32 142.5 215 40.9
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 6.9e-32 141.7 203 41.4
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.0e-31 140.2 218 36.2
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.6e-31 139.8 219 37.9
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 1.0e-30 137.9 205 39.5
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-30 137.5 223 38.6
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.7e-30 137.1 231 37.2
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.7e-30 137.1 231 37.2
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.2e-30 136.7 220 35.5
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 3.8e-30 136.0 222 36.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 6.5e-30 135.2 231 39.8
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.0e-27 127.9 213 39.0
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 1.8e-27 127.1 241 32.8
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 5.1e-27 125.6 137 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.6e-25 120.6 210 33.8
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.1e-24 117.9 180 36.1
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 1.1e-24 117.9 234 31.6
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 5.9e-23 112.1 120 47.5
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 7.6e-23 111.7 119 48.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 1.3e-22 110.9 138 45.7
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.9e-21 107.1 78 64.1
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 3.2e-21 106.3 112 47.3
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 5.5e-21 105.5 76 63.2
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 3.0e-19 99.8 180 31.7
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 1.7e-17 94.0 118 45.8
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 1.7e-17 94.0 106 46.2
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 2.8e-17 93.2 58 74.1
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 2.8e-17 93.2 58 74.1
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 1.4e-16 90.9 87 51.7
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.4e-16 90.1 91 46.2
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 1.5e-15 87.4 176 33.0
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 5.0e-14 82.4 164 34.8
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.2e-13 79.3 211 28.0
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 5.5e-13 79.0 100 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.7e-12 76.6 122 36.1
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 7.9e-12 75.1 95 40.0
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.4e-11 74.3 231 27.7
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 5.1e-11 72.4 216 28.2
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 7.4e-10 68.6 92 38.0
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 9.7e-10 68.2 104 34.6
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 6.5e-06 55.5 65 46.2


User provided reference genes

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