Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 2371.3 1241 100.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1327.4 1269 58.0
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1306.6 1268 56.9
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1290.8 1267 56.3
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1283.1 1261 56.6
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1278.8 1262 55.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1272.7 1256 56.2
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1272.7 1269 56.5
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1268.1 1264 55.9
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1255.0 1267 54.1
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1254.6 1256 55.6
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1248.0 1260 55.1
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1247.3 1260 55.1
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1245.0 1264 55.5
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1239.6 1252 56.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1234.6 1260 54.8
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1233.8 1265 53.9
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1223.8 1260 54.4
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1215.3 1260 53.4
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1214.1 1287 53.1
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1213.7 1268 54.6
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1212.2 1260 53.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1211.8 1261 53.0
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1201.8 1262 52.5
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1190.6 1252 53.8
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1182.9 1262 52.8
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1178.3 1260 51.5
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1174.1 1272 52.5
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1172.9 1270 52.0
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1167.5 1264 51.5
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1164.8 1277 51.3
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1164.1 1235 51.9
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1163.3 1263 52.7
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1159.1 1080 57.9
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1269 51.1
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1151.3 1260 51.0
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1142.5 1268 51.5
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1140.6 1265 50.6
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1139.8 1263 50.0
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1139.4 1188 53.6
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1137.9 1266 50.9
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1137.9 1239 51.6
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1137.1 1278 49.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1135.2 1234 51.5
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1126.7 1270 50.7
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1125.5 1237 50.8
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1116.7 1243 51.4
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1115.5 1233 50.4
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1114.0 1233 50.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1109.0 1250 50.7
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1254 49.9
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1105.1 1247 49.6
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1100.1 1278 49.4
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1253 48.6
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1098.2 1265 49.2
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1095.9 1230 51.5
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1094.7 1236 50.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1092.8 1261 48.6
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1091.3 1252 48.5
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1089.3 1179 53.3
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1088.2 1260 48.6
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1087.8 1259 48.7
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1086.6 1234 50.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1085.1 1256 49.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1082.8 1235 49.5
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1078.5 1249 48.8
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1077.8 1250 48.2
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1075.1 1196 52.3
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 3.4e-311 1072.0 1263 48.8
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 1.0e-310 1070.5 1252 48.8
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 2.4e-309 1065.8 1251 48.5
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 2.0e-303 1046.2 1292 48.1
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 6.4e-302 1041.2 1188 50.7
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.8e-299 1033.1 1264 47.4
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 1.9e-298 1029.6 1242 48.1
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 3.3e-298 1028.9 1251 47.4
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 4.3e-298 1028.5 1246 47.6
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 4.3e-298 1028.5 1276 47.9
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 6.2e-297 1024.6 1263 46.7
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 6.2e-297 1024.6 948 58.8
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 8.1e-297 1024.2 1245 48.3
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 3.4e-295 1018.8 1262 47.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 4.6e-292 1008.4 1009 56.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 1.3e-291 1006.9 1140 49.7
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 1.1e-290 1003.8 1254 47.1
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 5.7e-290 1001.5 931 58.1
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 1.8e-283 979.9 1252 46.0
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.3e-283 979.5 879 60.6
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.9e-277 959.9 1204 46.3
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.4e-275 953.7 1248 44.9
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.6e-271 939.5 1044 49.3
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 5.9e-239 832.0 734 58.7
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 2.0e-234 817.0 976 48.0
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 2.6e-226 790.0 985 49.6
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 9.2e-224 781.6 1228 40.0
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 8.9e-219 765.0 982 46.0
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 9.5e-213 745.0 1279 38.1
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.0e-206 723.4 898 47.9
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.2e-202 711.4 1089 39.0
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 3.3e-181 640.2 875 42.4
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 6.9e-171 605.9 774 44.8
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.0e-166 592.0 955 39.6
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 6.3e-164 582.8 841 41.6
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.5e-161 572.4 573 53.4
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.7e-159 567.4 841 41.3
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.4e-133 480.3 435 60.2
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-129 468.8 628 42.2
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 4.9e-124 450.3 595 43.5
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 4.6e-106 390.6 369 57.2
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 1.1e-96 359.4 361 57.6
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.2e-95 355.9 350 58.6
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 3.1e-94 351.3 352 58.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.2e-93 349.4 236 72.5
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.6e-85 320.1 474 37.3
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.3e-80 303.5 458 41.9
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 7.9e-74 283.5 490 35.9
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.5e-66 258.1 655 29.3
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 6.0e-66 257.3 384 43.8
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-63 249.6 427 33.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 1.5e-53 216.1 395 35.9
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.7e-50 205.3 323 37.8
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 3.7e-47 194.9 377 36.9
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.9e-37 161.0 273 38.1
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 8.5e-28 130.6 164 47.0
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 6.1e-26 124.4 323 33.1
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 3.8e-20 105.1 114 47.4
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 6.5e-20 104.4 118 45.8
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 5.5e-19 101.3 114 46.5
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.6e-18 99.8 114 46.5
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.1e-18 99.4 86 61.6
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.6e-16 92.4 118 41.5
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.2e-13 83.6 61 63.9
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.6e-13 83.2 341 27.3


User provided reference genes

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