Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-37 158.7 75 100.0
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 5.7e-20 100.5 74 63.5
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 4.1e-18 94.4 71 63.4
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 1.2e-17 92.8 74 60.8
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.2e-17 92.8 67 65.7
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 1.6e-17 92.4 74 59.5
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 2.0e-17 92.0 71 62.0
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 7.7e-17 90.1 71 60.6
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 7.7e-17 90.1 71 60.6
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.0e-16 89.7 71 63.4
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 1.3e-16 89.4 71 60.6
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 1.3e-16 89.4 69 62.3
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 1.3e-16 89.4 68 57.4
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 3.8e-16 87.8 71 62.0
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 3.8e-16 87.8 71 62.0
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 5.0e-16 87.4 71 59.2
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 8.5e-16 86.7 71 60.6
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 1.1e-15 86.3 71 59.2
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 1.1e-15 86.3 71 57.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.5e-15 85.9 68 61.8
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 1.5e-15 85.9 71 59.2
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.5e-15 85.9 70 64.3
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.9e-15 85.5 74 55.4
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 1.9e-15 85.5 71 57.7
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 2.5e-15 85.1 71 54.9
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.5e-15 85.1 71 60.6
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 3.2e-15 84.7 65 58.5
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 4.2e-15 84.3 71 56.3
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 5.5e-15 84.0 68 60.3
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 5.5e-15 84.0 72 55.6
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 7.2e-15 83.6 71 52.1
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 7.2e-15 83.6 71 54.9
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 7.2e-15 83.6 72 52.8
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 9.4e-15 83.2 71 56.3
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 9.4e-15 83.2 71 56.3
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 1.2e-14 82.8 71 54.9
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.2e-14 82.8 65 60.0
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 1.2e-14 82.8 73 57.5
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.1e-14 82.0 70 60.0
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.7e-14 81.6 70 60.0
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.7e-14 80.9 68 54.4
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 4.7e-14 80.9 65 55.4
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 4.7e-14 80.9 63 60.3
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.1e-14 80.5 65 60.0
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.1e-14 80.5 71 53.5
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 8.0e-14 80.1 70 54.3
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.0e-13 79.7 64 59.4
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 1.4e-13 79.3 73 47.9
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.4e-13 79.3 72 52.8
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 1.4e-13 79.3 71 50.7
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-13 79.3 65 58.5
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 1.8e-13 79.0 76 51.3
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 1.8e-13 79.0 71 50.7
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 2.3e-13 78.6 65 56.9
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 2.3e-13 78.6 65 58.5
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 4.0e-13 77.8 66 56.1
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 4.0e-13 77.8 65 58.5
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 4.0e-13 77.8 65 55.4
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 5.2e-13 77.4 65 56.9
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 5.2e-13 77.4 74 50.0
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 6.8e-13 77.0 65 53.8
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 6.8e-13 77.0 71 52.1
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 6.8e-13 77.0 65 56.9
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 6.8e-13 77.0 71 52.1
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 6.8e-13 77.0 65 52.3
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 8.8e-13 76.6 65 56.9
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 8.8e-13 76.6 67 55.2
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 8.8e-13 76.6 74 48.6
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 8.8e-13 76.6 66 53.0
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.2e-12 76.3 65 56.9
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.2e-12 76.3 65 56.9
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.5e-12 75.9 62 61.3
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 1.5e-12 75.9 65 52.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 2.0e-12 75.5 67 53.7
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.0e-12 75.5 67 49.3
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 2.6e-12 75.1 67 53.7
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 2.6e-12 75.1 55 60.0
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 2.6e-12 75.1 65 53.8
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.4e-12 74.7 66 51.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 3.4e-12 74.7 67 53.7
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 3.4e-12 74.7 65 52.3
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.4e-12 74.7 65 52.3
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 3.4e-12 74.7 67 49.3
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 4.4e-12 74.3 65 55.4
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 4.4e-12 74.3 67 49.3
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 5.7e-12 73.9 64 57.8
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.7e-12 73.9 67 52.2
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 5.7e-12 73.9 67 49.3
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 7.5e-12 73.6 67 52.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 7.5e-12 73.6 65 53.8
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 9.7e-12 73.2 65 50.8
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 9.7e-12 73.2 65 53.8
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 1.7e-11 72.4 71 53.5
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.7e-11 72.4 70 50.0
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 1.7e-11 72.4 64 50.0
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 2.2e-11 72.0 51 60.8
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 2.8e-11 71.6 71 49.3
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.8e-11 71.6 65 56.9
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.8e-11 71.6 64 50.0
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 3.7e-11 71.2 64 51.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 4.8e-11 70.9 65 52.3
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.8e-11 70.9 64 50.0
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 6.3e-11 70.5 66 50.0
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 6.3e-11 70.5 69 53.6
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.3e-11 70.1 65 50.8
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 8.3e-11 70.1 65 50.8
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 1.1e-10 69.7 64 53.1
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 1.1e-10 69.7 71 50.7
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-10 69.3 65 50.8
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 1.4e-10 69.3 65 50.8
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 1.4e-10 69.3 65 50.8
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.4e-10 69.3 65 50.8
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.4e-10 69.3 65 50.8
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.8e-10 68.9 66 48.5
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 2.4e-10 68.6 65 50.8
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.1e-10 68.2 65 49.2
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 3.1e-10 68.2 65 50.8
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.1e-10 68.2 72 50.0
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.1e-10 67.8 64 48.4
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 4.1e-10 67.8 66 50.0
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 5.3e-10 67.4 65 49.2
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 5.3e-10 67.4 72 45.8
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 5.3e-10 67.4 65 49.2
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 5.3e-10 67.4 67 49.3
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 5.3e-10 67.4 65 52.3
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 7.0e-10 67.0 65 49.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 7.0e-10 67.0 65 47.7
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 7.0e-10 67.0 65 47.7
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.0e-10 67.0 65 47.7
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 7.0e-10 67.0 65 46.2
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 7.0e-10 67.0 67 49.3
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 9.1e-10 66.6 61 52.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 9.1e-10 66.6 64 48.4
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.2e-09 66.2 65 44.6
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 3.5e-09 64.7 65 46.2
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 3.5e-09 64.7 65 46.2
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 4.5e-09 64.3 61 50.8
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 4.5e-09 64.3 64 51.6
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-08 63.2 67 44.8
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.2e-08 62.0 64 46.9
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 3.8e-08 61.2 50 60.0
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.5e-07 59.3 61 49.2
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 4.2e-07 57.8 44 54.5
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-06 55.8 65 43.1


User provided reference genes

Program Settings