Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 2.7e-46 188.3 96 100.0
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 5.2e-42 174.1 96 92.7
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 6.0e-22 107.5 81 63.0
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 7.3e-20 100.5 77 62.3
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 2.1e-19 99.0 68 70.6
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 2.1e-19 99.0 92 56.5
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 6.2e-19 97.4 87 57.5
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 8.1e-19 97.1 93 57.0
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 1.4e-18 96.3 87 55.2
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 4.0e-18 94.7 74 64.9
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 5.2e-18 94.4 93 55.9
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 2.0e-17 92.4 93 53.8
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 3.4e-17 91.7 93 55.9
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 7.6e-17 90.5 70 60.0
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 9.9e-17 90.1 81 55.6
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 1.7e-16 89.4 93 50.5
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 2.2e-16 89.0 93 53.8
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 2.9e-16 88.6 93 50.5
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 3.7e-16 88.2 94 52.1
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 6.4e-16 87.4 81 60.5
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 8.3e-16 87.0 79 58.2
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 1.4e-15 86.3 91 47.3
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 1.4e-15 86.3 93 49.5
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 2.4e-15 85.5 83 51.8
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 3.2e-15 85.1 88 53.4
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 3.2e-15 85.1 72 58.3
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 3.2e-15 85.1 77 58.4
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 4.1e-15 84.7 74 62.2
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 7.1e-15 84.0 96 49.0
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 9.2e-15 83.6 77 58.4
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.6e-14 82.8 94 50.0
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 1.6e-14 82.8 94 50.0
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 2.1e-14 82.4 93 49.5
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 2.7e-14 82.0 85 48.2
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.7e-14 82.0 85 49.4
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 3.5e-14 81.6 95 51.6
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 4.6e-14 81.3 71 57.7
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 4.6e-14 81.3 94 50.0
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 6.0e-14 80.9 91 48.4
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 7.8e-14 80.5 83 51.8
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 1.0e-13 80.1 94 47.9
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 1.3e-13 79.7 95 47.4
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.3e-13 79.7 70 62.9
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 3.0e-13 78.6 95 49.5
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 5.1e-13 77.8 95 47.4
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 5.1e-13 77.8 93 41.9
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 8.6e-13 77.0 64 54.7
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 8.6e-13 77.0 64 54.7
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 8.6e-13 77.0 80 53.8
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 8.6e-13 77.0 63 57.1
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 1.1e-12 76.6 90 50.0
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 1.1e-12 76.6 94 53.2
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 2.5e-12 75.5 69 47.8
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 2.5e-12 75.5 52 71.2
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 2.5e-12 75.5 78 51.3
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 4.3e-12 74.7 93 48.4
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 4.3e-12 74.7 79 55.7
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 9.6e-12 73.6 79 48.1
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 1.2e-11 73.2 93 48.4
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.2e-11 73.2 83 45.8
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 2.1e-11 72.4 81 48.1
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 2.1e-11 72.4 60 66.7
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 2.8e-11 72.0 74 50.0
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 3.6e-11 71.6 55 63.6
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 3.6e-11 71.6 71 49.3
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 3.6e-11 71.6 89 46.1
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 4.7e-11 71.2 96 44.8
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.7e-11 71.2 93 46.2
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 8.1e-11 70.5 65 53.8
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 1.1e-10 70.1 64 53.1
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 1.1e-10 70.1 69 52.2
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.8e-10 69.3 81 46.9
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 2.4e-10 68.9 60 58.3
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 3.1e-10 68.6 67 49.3
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 3.1e-10 68.6 93 43.0
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.0e-10 68.2 64 51.6
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 4.0e-10 68.2 64 51.6
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 4.0e-10 68.2 67 53.7
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 4.0e-10 68.2 67 49.3
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 5.2e-10 67.8 67 49.3
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 5.2e-10 67.8 67 49.3
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 5.2e-10 67.8 93 46.2
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 6.8e-10 67.4 60 56.7
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 8.9e-10 67.0 65 49.2
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 8.9e-10 67.0 67 47.8
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 8.9e-10 67.0 95 43.2
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 8.9e-10 67.0 96 42.7
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 8.9e-10 67.0 67 47.8
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 8.9e-10 67.0 76 48.7
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 1.2e-09 66.6 62 51.6
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.2e-09 66.6 74 47.3
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 1.5e-09 66.2 67 47.8
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.5e-09 66.2 67 47.8
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 1.5e-09 66.2 96 45.8
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 2.6e-09 65.5 93 41.9
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 3.4e-09 65.1 60 51.7
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 3.4e-09 65.1 60 51.7
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 3.4e-09 65.1 64 50.0
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 3.4e-09 65.1 59 55.9
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 4.4e-09 64.7 62 61.3
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 5.8e-09 64.3 65 47.7
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 5.8e-09 64.3 65 47.7
CARHR114390 Cardamine hirsuta HOM05D013772 ORTHO05D006334 1.3e-08 63.2 44 63.6
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 1.3e-08 63.2 46 63.0
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 1.3e-08 63.2 96 42.7
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 1.7e-08 62.8 67 46.3
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 1.7e-08 62.8 65 50.8
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.7e-08 62.8 71 43.7
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 2.2e-08 62.4 81 43.2
AT2G23120 Arabidopsis thaliana HOM05D013772 ORTHO05D006334 2.2e-08 62.4 54 57.4
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 2.2e-08 62.4 87 44.8
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 2.2e-08 62.4 66 51.5
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 2.9e-08 62.0 75 46.7
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 4.9e-08 61.2 83 44.6
Lsat_1_v5_gn_3_87720 Lactuca sativa HOM05D005680 ORTHO05D006334 6.4e-08 60.8 48 60.4
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 8.4e-08 60.5 56 51.8
AL4G12960 Arabidopsis lyrata HOM05D013772 ORTHO05D006334 1.9e-07 59.3 42 64.3
BcaC07g41006 Brassica carinata HOM05D013772 ORTHO05D006334 3.2e-07 58.5 54 55.6
C08p40100 Brassica napus HOM05D013772 ORTHO05D006334 3.2e-07 58.5 54 55.6
BolC8t51580H Brassica oleracea HOM05D013772 ORTHO05D006334 3.2e-07 58.5 54 55.6
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 5.4e-07 57.8 86 40.7
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 7.1e-07 57.4 55 47.3
A09p57080 Brassica napus HOM05D013772 ORTHO05D006334 1.2e-06 56.6 54 53.7
BraA09t41100Z Brassica rapa HOM05D013772 ORTHO05D006334 1.2e-06 56.6 54 53.7
Aa31LG7G13780 Aethionema arabicum HOM05D005680 ORTHO05D006334 2.1e-06 55.8 50 52.0
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 4.6e-06 54.7 86 34.9
ATR0030G059 Amborella trichopoda HOM05D005680 ORTHO05D006334 6.0e-06 54.3 71 49.3
Lalb_Chr23g0265551 Lupinus albus HOM05D005680 ORTHO05D006334 6.0e-06 54.3 63 47.6
Sp4g02160 Schrenkiella parvula HOM05D013772 ORTHO05D006334 7.8e-06 53.9 54 55.6
Zm00001eb316370 Zea mays HOM05D031961 ORTHO05D006334 7.8e-06 53.9 74 47.3


User provided reference genes

Program Settings