Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.1e-80 302.4 159 100.0
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 4.1e-76 288.1 153 98.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 2.8e-48 195.7 155 70.3
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 8.0e-48 194.1 146 74.0
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.0e-47 193.7 126 80.2
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.5e-46 189.9 127 80.3
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.5e-46 189.9 116 84.5
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.0e-46 189.5 155 68.4
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 5.8e-46 188.0 156 67.3
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 3.7e-45 185.3 112 86.6
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 6.4e-45 184.5 112 85.7
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 6.4e-45 184.5 151 66.2
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.1e-44 183.7 127 78.7
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 1.9e-44 183.0 163 65.0
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.4e-44 182.6 154 65.6
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 5.4e-44 181.4 146 69.2
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 7.0e-44 181.0 130 74.6
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 9.2e-44 180.6 151 66.9
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.6e-43 178.3 132 72.0
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.0e-43 177.9 112 81.2
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 7.8e-43 177.6 131 72.5
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.3e-42 176.0 134 72.4
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.1e-41 173.7 112 79.5
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.1e-41 173.7 121 73.6
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.5e-41 173.3 111 81.1
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.5e-41 173.3 155 62.6
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 1.9e-41 172.9 112 79.5
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 1.9e-41 172.9 112 79.5
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 1.9e-41 172.9 112 79.5
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 2.5e-41 172.6 149 63.8
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.3e-41 172.2 122 72.1
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 3.3e-41 172.2 106 83.0
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 4.3e-41 171.8 112 78.6
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 5.6e-41 171.4 124 71.8
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 5.6e-41 171.4 154 64.9
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 7.3e-41 171.0 124 71.8
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.5e-41 170.6 124 70.2
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 9.5e-41 170.6 110 80.0
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.2e-40 170.2 150 64.0
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.2e-40 170.2 122 72.1
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 1.6e-40 169.9 112 76.8
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.8e-40 169.1 122 73.0
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 2.8e-40 169.1 151 62.3
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 8.1e-40 167.5 111 77.5
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.1e-39 167.2 162 60.5
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 4.0e-39 165.2 123 69.1
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 8.9e-39 164.1 115 74.8
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.2e-38 163.7 109 77.1
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.0e-38 162.9 110 75.5
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 2.6e-38 162.5 107 77.6
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 7.5e-38 161.0 145 62.1
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 7.5e-38 161.0 145 62.1
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 1.3e-37 160.2 133 64.7
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.3e-37 160.2 152 59.9
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.3e-37 160.2 152 59.9
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.7e-37 159.8 110 73.6
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.2e-37 159.5 146 59.6
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 4.9e-37 158.3 107 74.8
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 6.4e-37 157.9 142 62.7
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 6.4e-37 157.9 142 62.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-36 157.1 126 65.9
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.1e-36 157.1 126 65.9
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.1e-36 157.1 126 65.9
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 1.1e-36 157.1 130 64.6
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.9e-36 156.4 147 62.6
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 1.9e-36 156.4 109 73.4
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.2e-36 155.6 124 67.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-36 155.6 121 66.9
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 3.2e-36 155.6 123 65.9
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 5.4e-36 154.8 108 72.2
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 5.4e-36 154.8 141 62.4
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 7.1e-36 154.5 146 59.6
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 7.1e-36 154.5 108 74.1
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.6e-35 153.3 84 97.6
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 2.7e-35 152.5 134 66.4
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.5e-35 152.1 143 60.1
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 4.6e-35 151.8 112 69.6
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 6.0e-35 151.4 112 69.6
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 6.0e-35 151.4 112 69.6
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 7.8e-35 151.0 103 74.8
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.3e-34 150.2 134 63.4
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 6.6e-34 147.9 90 84.4
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.6e-34 147.5 134 61.9
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.6e-34 147.5 134 62.7
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.5e-33 146.7 109 66.1
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 7.3e-33 144.4 105 69.5
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 9.5e-33 144.1 128 62.5
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 1.2e-32 143.7 155 54.8
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.8e-32 142.5 102 69.6
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.6e-32 142.1 105 72.4
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 6.2e-32 141.4 159 51.6
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 1.8e-31 139.8 91 79.1
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.3e-31 139.4 90 76.7
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.3e-31 139.4 90 76.7
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.2e-30 137.1 120 58.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.2e-30 137.1 90 74.4
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.5e-30 136.7 132 60.6
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 3.4e-30 135.6 123 61.0
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 4.4e-30 135.2 90 76.7
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 2.2e-29 132.9 133 53.4
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 8.4e-29 131.0 103 64.1
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 4.1e-28 128.6 95 68.4
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.2e-27 127.1 118 61.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 1.9e-25 119.8 86 67.4
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 9.6e-25 117.5 159 44.0
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 2.8e-24 115.9 76 73.7
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.6e-24 115.5 76 72.4
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 6.2e-24 114.8 155 49.0
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 4.0e-23 112.1 94 64.9
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.6e-22 109.4 123 50.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 4.4e-22 108.6 105 59.0
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.3e-21 107.1 143 41.3
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 3.8e-21 105.5 68 75.0
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.4e-20 102.8 150 42.7
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 7.1e-20 101.3 103 57.3
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 5.1e-18 95.1 133 42.9
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 6.6e-18 94.7 57 87.7
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.5e-17 93.6 94 50.0
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.3e-17 92.4 59 81.4
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 4.8e-16 88.6 70 65.7
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 9.0e-15 84.3 145 42.1
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.7e-13 80.1 60 66.7
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 3.8e-13 79.0 73 54.8
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 3.8e-13 79.0 73 54.8
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 7.1e-12 74.7 68 60.3
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-11 73.9 56 64.3
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 1.2e-11 73.9 68 60.3
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 6.0e-11 71.6 46 73.9
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 1.4e-07 60.5 69 50.7
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.8e-07 60.1 45 68.9
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 6.9e-07 58.2 74 45.9
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 6.9e-07 58.2 83 47.0
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 6.9e-07 58.2 83 47.0
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 2.6e-06 56.2 83 45.8
Cpa.g.sc537.1 Carica papaya HOM05D005411 ORTHO05D006463 3.4e-06 55.8 109 37.6
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.5e-06 55.5 37 75.7
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.5e-06 55.5 37 75.7
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 5.8e-06 55.1 36 77.8
HPP92_001496 Vanilla planifolia HOM05D005411 ORTHO05D006463 9.9e-06 54.3 46 63.0


User provided reference genes

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