Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.1e-41 172.9 92 100.0
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.6e-35 151.8 84 97.6
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.4e-31 139.4 78 96.2
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.0e-11 72.4 80 52.5
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 5.9e-11 70.9 71 62.0
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 2.9e-10 68.6 81 54.3
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 8.6e-10 67.0 84 52.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.5e-09 66.2 62 66.1
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 2.5e-09 65.5 79 50.6
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.3e-09 65.1 80 51.2
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 3.3e-09 65.1 52 71.2
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 5.6e-09 64.3 80 51.2
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 7.3e-09 63.9 78 47.4
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 9.5e-09 63.5 37 91.9
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 9.5e-09 63.5 37 91.9
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 9.5e-09 63.5 63 60.3
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 2.8e-08 62.0 37 86.5
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.8e-08 62.0 67 53.7
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.6e-08 61.6 67 53.7
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.6e-08 61.6 81 49.4
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.7e-08 61.2 81 49.4
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 4.7e-08 61.2 76 52.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 6.1e-08 60.8 76 47.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 6.1e-08 60.8 75 53.3
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 8.0e-08 60.5 81 53.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 8.0e-08 60.5 81 48.1
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 8.0e-08 60.5 80 48.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 8.0e-08 60.5 87 50.6
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 1.4e-07 59.7 35 88.6
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 1.8e-07 59.3 37 83.8
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.8e-07 59.3 37 83.8
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.8e-07 59.3 63 54.0
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 2.3e-07 58.9 37 83.8
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.3e-07 58.9 68 52.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.3e-07 58.9 71 56.3
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.0e-07 58.5 36 83.3
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.0e-07 58.5 37 83.8
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.0e-07 58.2 37 81.1
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 5.2e-07 57.8 60 53.3
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 5.2e-07 57.8 36 80.6
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 5.2e-07 57.8 36 80.6
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 6.8e-07 57.4 37 78.4
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 8.9e-07 57.0 55 61.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 1.2e-06 56.6 78 51.3
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.2e-06 56.6 34 88.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.2e-06 56.6 69 52.2
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-06 56.2 37 75.7
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.5e-06 56.2 37 75.7
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.0e-06 55.8 36 80.6
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 2.0e-06 55.8 74 45.9
Hund13808 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.0e-06 55.8 36 77.8
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.0e-06 55.8 64 54.7
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 2.6e-06 55.5 75 50.7
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 2.6e-06 55.5 67 52.2
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 3.4e-06 55.1 72 52.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 3.4e-06 55.1 79 46.8
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 3.4e-06 55.1 36 75.0
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.4e-06 55.1 74 51.4
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.4e-06 55.1 74 51.4
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 4.4e-06 54.7 35 80.0
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 4.4e-06 54.7 35 80.0
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 4.4e-06 54.7 36 75.0
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 4.4e-06 54.7 75 45.3
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 4.4e-06 54.7 83 49.4
HPP92_001496 Vanilla planifolia HOM05D005411 ORTHO05D006463 4.4e-06 54.7 46 63.0
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 5.7e-06 54.3 67 50.7


User provided reference genes

Program Settings