Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02236 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.1e-46 188.7 98 100.0
Eucgr.H02233 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.0e-45 186.4 98 93.9
Eucgr.H01293 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.1e-38 160.6 84 94.0
Eucgr.H02228 Eucalyptus grandis HOM05D008343 ORTHO05D009841 3.4e-33 144.8 84 89.3
Eucgr.H02229 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.7e-28 127.5 97 74.2
Eucgr.H02234 Eucalyptus grandis HOM05D008343 ORTHO05D009841 7.4e-28 127.1 72 88.9
Eucgr.H02237 Eucalyptus grandis HOM05D008343 ORTHO05D009841 7.4e-28 127.1 72 88.9
Eucgr.H01292 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.2e-27 125.6 72 86.1
Eucgr.H02240 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.1e-26 121.3 72 86.1
Eucgr.H02243 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.0e-24 116.7 72 83.3
Prupe.6G228500 Prunus persica HOM05D008343 ORTHO05D009841 2.1e-14 82.4 63 63.5
MD02G1179300 Malus domestica HOM05D008343 ORTHO05D009841 4.7e-14 81.3 70 57.1
MD15G1289400 Malus domestica HOM05D014781 ORTHO05D009841 2.3e-13 79.0 69 55.1
CiPaw.02G005800 Carya illinoinensis HOM05D008343 ORTHO05D009841 5.2e-13 77.8 56 66.1
Potri.007G049500 Populus trichocarpa HOM05D008343 ORTHO05D009841 5.2e-13 77.8 89 49.4
Dinv30037 Davidia involucrata HOM05D008343 ORTHO05D009841 8.8e-13 77.0 65 53.8
Prupe.3G151900 Prunus persica HOM05D008343 ORTHO05D009841 8.8e-13 77.0 59 62.7
Potri.016G015600 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.3e-11 73.2 100 45.0
Lalb_Chr05g0226171 Lupinus albus HOM05D008343 ORTHO05D009841 1.7e-11 72.8 74 50.0
Dinv26871 Davidia involucrata HOM05D008343 ORTHO05D009841 2.2e-11 72.4 67 56.7
Potri.005G142900 Populus trichocarpa HOM05D008343 ORTHO05D009841 3.7e-11 71.6 68 52.9
QL06p040048 Quercus lobata HOM05D008343 ORTHO05D009841 8.3e-11 70.5 58 55.2
QL06p040052 Quercus lobata HOM05D008343 ORTHO05D009841 8.3e-11 70.5 66 50.0
Lalb_Chr16g0388911 Lupinus albus HOM05D008343 ORTHO05D009841 1.4e-10 69.7 76 48.7
CSS0015714 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 1.8e-10 69.3 68 51.5
GSVIVG01000214001 Vitis vinifera HOM05D008343 ORTHO05D009841 2.4e-10 68.9 62 59.7
GSVIVG01032935001 Vitis vinifera HOM05D000114 ORTHO05D000075 3.1e-10 68.6 75 53.3
Eucgr.H02232 Eucalyptus grandis HOM05D034744 ORTHO05D011351 5.4e-10 67.8 84 47.6
Eucgr.H02235 Eucalyptus grandis HOM05D034744 ORTHO05D011351 5.4e-10 67.8 84 47.6
Lj4g0017585 Lotus japonicus HOM05D008343 ORTHO05D009841 5.4e-10 67.8 86 51.2
MELO3C007588.2 Cucumis melo HOM05D024155 ORTHO05D010780 9.1e-10 67.0 91 44.0
Haze_15346 Corylus avellana HOM05D008343 ORTHO05D009841 1.2e-09 66.6 58 50.0
RcHm_v2.0_Chr2g0106731 Rosa chinensis HOM05D014781 ORTHO05D009841 1.2e-09 66.6 66 51.5
Peaxi162Scf00365g00051 Petunia axillaris HOM05D011430 ORTHO05D009841 1.6e-09 66.2 70 54.3
Potri.006G008066 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.6e-09 66.2 81 46.9
Cfa004065 Carpinus fangiana HOM05D008343 ORTHO05D009841 2.0e-09 65.9 58 51.7
FvH4_1g16830 Fragaria vesca HOM05D014781 ORTHO05D009841 2.0e-09 65.9 70 48.6
FAN19G0512 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.0e-09 65.9 70 48.6
FAN26G0261 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.0e-09 65.9 70 48.6
FAN28G1184 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.0e-09 65.9 69 47.8
RcHm_v2.0_Chr1g0340091 Rosa chinensis HOM05D014781 ORTHO05D009841 2.7e-09 65.5 64 48.4
Glyma.17G166600 Glycine max HOM05D008343 ORTHO05D009841 4.5e-09 64.7 71 52.1
Dinv30038 Davidia involucrata HOM05D008343 ORTHO05D009841 5.9e-09 64.3 61 52.5
FAN28G2323 Fragaria x ananassa HOM05D014781 ORTHO05D009841 5.9e-09 64.3 69 46.4
TAR376G0584 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.0e-08 63.5 67 49.3
CiPaw.01G012500 Carya illinoinensis HOM05D008343 ORTHO05D009841 1.3e-08 63.2 77 50.6
Gohir.A10G090600 Gossypium hirsutum HOM05D018273 ORTHO05D011351 1.3e-08 63.2 73 52.1
Thecc.01G063900 Theobroma cacao HOM05D018273 ORTHO05D009841 1.3e-08 63.2 72 50.0
Potri.007G049400 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.7e-08 62.8 58 62.1
Gohir.D10G097300 Gossypium hirsutum HOM05D018273 ORTHO05D011351 2.2e-08 62.4 73 52.1
Nn1g04695 Nelumbo nucifera HOM05D008343 ORTHO05D009841 2.2e-08 62.4 77 48.1
TAR376G0451 Trochodendron aralioides HOM05D008343 ORTHO05D009841 2.9e-08 62.0 56 55.4
Peaxi162Scf00365g00065 Petunia axillaris HOM05D011430 ORTHO05D009841 5.0e-08 61.2 70 51.4
TAR376G0088 Trochodendron aralioides HOM05D008343 ORTHO05D009841 5.0e-08 61.2 51 54.9
Actinidia22664 Actinidia chinensis HOM05D016877 ORTHO05D011351 6.5e-08 60.8 60 48.3
Gorai.011G106800 Gossypium raimondii HOM05D018273 ORTHO05D011351 6.5e-08 60.8 73 50.7
Peaxi162Scf00365g00056 Petunia axillaris HOM05D011430 ORTHO05D009841 8.5e-08 60.5 53 60.4
Peaxi162Scf00365g00064 Petunia axillaris HOM05D011430 ORTHO05D009841 8.5e-08 60.5 70 50.0
Hma1.2p1_0239F.1_g099990 Hydrangea macrophylla HOM05D008343 ORTHO05D009841 1.1e-07 60.1 61 47.5
Nn1g04691 Nelumbo nucifera HOM05D008343 ORTHO05D009841 2.5e-07 58.9 63 49.2
Actinidia33351 Actinidia chinensis HOM05D016877 ORTHO05D011351 4.2e-07 58.2 52 48.1
Cpa.g.sc6.93 Carica papaya HOM05D008343 ORTHO05D009841 5.5e-07 57.8 66 48.5
Glyma.05G099300 Glycine max HOM05D008343 ORTHO05D009841 5.5e-07 57.8 69 50.7
Eucgr.H01291 Eucalyptus grandis HOM05D034744 ORTHO05D011351 7.2e-07 57.4 79 45.6
TAR376G1160 Trochodendron aralioides HOM05D008343 ORTHO05D009841 7.2e-07 57.4 50 56.0
Oeu011599.1 Olea europaea HOM05D024394 ORTHO05D025324 9.4e-07 57.0 73 47.9
TAR376G1156 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.2e-06 56.6 29 82.8
Nitab4.5_0002578g0020 Nicotiana tabacum HOM05D011430 ORTHO05D009841 1.6e-06 56.2 77 42.9
Ciclev10027017m.g Citrus clementina HOM05D008343 ORTHO05D009841 2.1e-06 55.8 78 41.0
Manes.05G178102 Manihot esculenta HOM05D018019 ORTHO05D011351 2.1e-06 55.8 68 50.0
Gohir.A10G217550 Gossypium hirsutum HOM05D018273 ORTHO05D009841 2.7e-06 55.5 63 46.0
Gorai.011G257600 Gossypium raimondii HOM05D018273 ORTHO05D009841 2.7e-06 55.5 63 46.0
THA.LOC104807602 Tarenaya hassleriana HOM05D008734 ORTHO05D010780 3.6e-06 55.1 44 61.4
THA.LOC109116433 Tarenaya hassleriana HOM05D008734 ORTHO05D010780 3.6e-06 55.1 44 61.4
Aqoxy6G02858 Aquilegia oxysepala HOM05D008343 ORTHO05D009841 4.7e-06 54.7 69 43.5
Nitab4.5_0000419g0050 Nicotiana tabacum HOM05D011430 ORTHO05D009841 4.7e-06 54.7 70 47.1
Nitab4.5_0001027g0160 Nicotiana tabacum HOM05D011430 ORTHO05D009841 4.7e-06 54.7 70 47.1
Solyc03g044180.1 Solanum lycopersicum HOM05D011430 ORTHO05D009841 4.7e-06 54.7 63 49.2
Nn1g04690 Nelumbo nucifera HOM05D008343 ORTHO05D271030 8.0e-06 53.9 64 48.4
PGSC0003DMG400014879 Solanum tuberosum HOM05D011430 ORTHO05D009841 8.0e-06 53.9 63 49.2


User provided reference genes

Program Settings