Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02233 Eucalyptus grandis HOM05D008343 ORTHO05D009841 5.3e-50 200.7 98 100.0
Eucgr.H02236 Eucalyptus grandis HOM05D008343 ORTHO05D009841 3.0e-45 184.9 98 93.9
Eucgr.H01293 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.0e-37 159.8 86 91.9
Eucgr.H02228 Eucalyptus grandis HOM05D008343 ORTHO05D009841 4.5e-33 144.4 84 89.3
Eucgr.H02234 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.8e-27 125.2 72 87.5
Eucgr.H02237 Eucalyptus grandis HOM05D008343 ORTHO05D009841 2.8e-27 125.2 72 87.5
Eucgr.H02229 Eucalyptus grandis HOM05D008343 ORTHO05D009841 6.3e-27 124.0 97 71.1
Eucgr.H01292 Eucalyptus grandis HOM05D008343 ORTHO05D009841 8.2e-27 123.6 72 84.7
Eucgr.H02240 Eucalyptus grandis HOM05D008343 ORTHO05D009841 1.5e-25 119.4 72 84.7
Eucgr.H02243 Eucalyptus grandis HOM05D008343 ORTHO05D009841 3.8e-24 114.8 72 81.9
Prupe.6G228500 Prunus persica HOM05D008343 ORTHO05D009841 8.0e-14 80.5 63 61.9
MD02G1179300 Malus domestica HOM05D008343 ORTHO05D009841 1.8e-13 79.3 70 55.7
Potri.007G049500 Populus trichocarpa HOM05D008343 ORTHO05D009841 5.2e-13 77.8 89 48.3
MD15G1289400 Malus domestica HOM05D014781 ORTHO05D009841 8.8e-13 77.0 69 53.6
Prupe.3G151900 Prunus persica HOM05D008343 ORTHO05D009841 1.5e-12 76.3 61 60.7
CiPaw.02G005800 Carya illinoinensis HOM05D008343 ORTHO05D009841 2.0e-12 75.9 56 64.3
Dinv30037 Davidia involucrata HOM05D008343 ORTHO05D009841 3.4e-12 75.1 65 52.3
Potri.016G015600 Populus trichocarpa HOM05D008343 ORTHO05D009841 7.5e-12 73.9 100 44.0
MELO3C007588.2 Cucumis melo HOM05D024155 ORTHO05D010780 9.8e-12 73.6 91 46.2
Lalb_Chr05g0226171 Lupinus albus HOM05D008343 ORTHO05D009841 8.3e-11 70.5 74 48.6
Dinv26871 Davidia involucrata HOM05D008343 ORTHO05D009841 1.1e-10 70.1 67 55.2
Potri.005G142900 Populus trichocarpa HOM05D008343 ORTHO05D009841 1.8e-10 69.3 68 51.5
QL06p040052 Quercus lobata HOM05D008343 ORTHO05D009841 3.1e-10 68.6 66 48.5
GSVIVG01032935001 Vitis vinifera HOM05D000114 ORTHO05D000075 3.1e-10 68.6 82 51.2
QL06p040048 Quercus lobata HOM05D008343 ORTHO05D009841 4.1e-10 68.2 58 53.4
CSS0015714 Camellia sinensis var. sinensis HOM05D008343 ORTHO05D009841 7.0e-10 67.4 68 50.0
Lalb_Chr16g0388911 Lupinus albus HOM05D008343 ORTHO05D009841 9.1e-10 67.0 104 40.4
GSVIVG01000214001 Vitis vinifera HOM05D008343 ORTHO05D009841 1.2e-09 66.6 62 58.1
Lj4g0017585 Lotus japonicus HOM05D008343 ORTHO05D009841 2.7e-09 65.5 86 50.0
Eucgr.H02232 Eucalyptus grandis HOM05D034744 ORTHO05D011351 3.5e-09 65.1 84 46.4
Eucgr.H02235 Eucalyptus grandis HOM05D034744 ORTHO05D011351 3.5e-09 65.1 84 46.4
Haze_15346 Corylus avellana HOM05D008343 ORTHO05D009841 4.5e-09 64.7 58 48.3
RcHm_v2.0_Chr2g0106731 Rosa chinensis HOM05D014781 ORTHO05D009841 4.5e-09 64.7 66 50.0
Peaxi162Scf00365g00051 Petunia axillaris HOM05D011430 ORTHO05D009841 5.9e-09 64.3 70 52.9
Potri.006G008066 Populus trichocarpa HOM05D008343 ORTHO05D009841 5.9e-09 64.3 81 45.7
Cfa004065 Carpinus fangiana HOM05D008343 ORTHO05D009841 7.7e-09 63.9 58 50.0
FvH4_1g16830 Fragaria vesca HOM05D014781 ORTHO05D009841 7.7e-09 63.9 70 47.1
FAN19G0512 Fragaria x ananassa HOM05D014781 ORTHO05D009841 7.7e-09 63.9 70 47.1
FAN26G0261 Fragaria x ananassa HOM05D014781 ORTHO05D009841 7.7e-09 63.9 70 47.1
FAN28G1184 Fragaria x ananassa HOM05D014781 ORTHO05D009841 7.7e-09 63.9 69 46.4
Gohir.A10G090600 Gossypium hirsutum HOM05D018273 ORTHO05D011351 7.7e-09 63.9 81 50.6
RcHm_v2.0_Chr1g0340091 Rosa chinensis HOM05D014781 ORTHO05D009841 7.7e-09 63.9 64 46.9
Gohir.D10G097300 Gossypium hirsutum HOM05D018273 ORTHO05D011351 1.3e-08 63.2 81 50.6
Nitab4.5_0002578g0020 Nicotiana tabacum HOM05D011430 ORTHO05D009841 1.3e-08 63.2 91 42.9
Nn1g04695 Nelumbo nucifera HOM05D008343 ORTHO05D009841 1.7e-08 62.8 91 45.1
Dinv30038 Davidia involucrata HOM05D008343 ORTHO05D009841 2.2e-08 62.4 61 50.8
FAN28G2323 Fragaria x ananassa HOM05D014781 ORTHO05D009841 2.2e-08 62.4 69 44.9
Potri.007G049400 Populus trichocarpa HOM05D008343 ORTHO05D009841 2.9e-08 62.0 66 56.1
Thecc.01G063900 Theobroma cacao HOM05D018273 ORTHO05D009841 2.9e-08 62.0 79 49.4
Gorai.011G106800 Gossypium raimondii HOM05D018273 ORTHO05D011351 3.8e-08 61.6 81 49.4
TAR376G0584 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.8e-08 61.6 67 47.8
Glyma.17G166600 Glycine max HOM05D008343 ORTHO05D009841 5.0e-08 61.2 83 45.8
CiPaw.01G012500 Carya illinoinensis HOM05D008343 ORTHO05D009841 6.5e-08 60.8 77 49.4
TAR376G0451 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.1e-07 60.1 56 53.6
Peaxi162Scf00365g00065 Petunia axillaris HOM05D011430 ORTHO05D009841 1.9e-07 59.3 70 50.0
TAR376G0088 Trochodendron aralioides HOM05D008343 ORTHO05D009841 1.9e-07 59.3 51 52.9
Peaxi162Scf00365g00064 Petunia axillaris HOM05D011430 ORTHO05D009841 3.2e-07 58.5 70 48.6
Hma1.2p1_0239F.1_g099990 Hydrangea macrophylla HOM05D008343 ORTHO05D009841 4.2e-07 58.2 61 45.9
Peaxi162Scf00365g00056 Petunia axillaris HOM05D011430 ORTHO05D009841 4.2e-07 58.2 53 58.5
Nn1g04691 Nelumbo nucifera HOM05D008343 ORTHO05D009841 9.4e-07 57.0 63 47.6
Cpa.g.sc6.93 Carica papaya HOM05D008343 ORTHO05D009841 2.1e-06 55.8 66 47.0
Glyma.05G099300 Glycine max HOM05D008343 ORTHO05D009841 2.1e-06 55.8 69 49.3
Eucgr.H01291 Eucalyptus grandis HOM05D034744 ORTHO05D011351 2.7e-06 55.5 79 44.3
TAR376G1160 Trochodendron aralioides HOM05D008343 ORTHO05D009841 3.6e-06 55.1 50 54.0
Oeu011599.1 Olea europaea HOM05D024394 ORTHO05D025324 4.7e-06 54.7 73 46.6
TAR376G1156 Trochodendron aralioides HOM05D008343 ORTHO05D009841 4.7e-06 54.7 29 79.3
Carub.0007s0300 Capsella rubella HOM05D008734 ORTHO05D010780 6.1e-06 54.3 88 39.8
Thhalv10027040m.g Eutrema salsugineum HOM05D008734 ORTHO05D010780 6.1e-06 54.3 44 61.4
Potri.009G095600 Populus trichocarpa HOM05D018770 ORTHO05D022402 6.1e-06 54.3 92 39.1
BcaC01g00413 Brassica carinata HOM05D008734 ORTHO05D010780 8.0e-06 53.9 81 44.4
C03p79450 Brassica napus HOM05D008734 ORTHO05D010780 8.0e-06 53.9 81 44.4
BolC3t20197H Brassica oleracea HOM05D008734 ORTHO05D010780 8.0e-06 53.9 45 60.0
Ciclev10027017m.g Citrus clementina HOM05D008343 ORTHO05D009841 8.0e-06 53.9 78 39.7
Manes.05G178102 Manihot esculenta HOM05D018019 ORTHO05D011351 8.0e-06 53.9 68 48.5


User provided reference genes

Program Settings