Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H02163 Eucalyptus grandis HOM05D000509 ORTHO05D000466 5.0e-49 197.6 109 100.0
Eucgr.H02217 Eucalyptus grandis HOM05D000509 ORTHO05D000466 9.1e-43 176.8 97 99.0
Eucgr.H02189 Eucalyptus grandis HOM05D000509 ORTHO05D000466 1.5e-40 169.5 98 96.9
TWI09G1421 Tripterygium wilfordii HOM05D000509 ORTHO05D000466 7.7e-26 120.6 102 71.6
Eucgr.H01774 Eucalyptus grandis HOM05D000509 ORTHO05D000466 1.0e-25 120.2 78 85.9
PGR102G3086 Punica granatum HOM05D000509 ORTHO05D000466 1.3e-25 119.8 99 72.7
Gohir.A12G073300 Gossypium hirsutum HOM05D000509 ORTHO05D000466 3.8e-25 118.2 97 68.0
Gorai.008G078100 Gossypium raimondii HOM05D000509 ORTHO05D000466 1.5e-24 116.3 93 66.7
Lj4g0015586 Lotus japonicus HOM05D000509 ORTHO05D000466 1.5e-24 116.3 96 67.7
Cpa.g.sc55.110 Carica papaya HOM05D000509 ORTHO05D000466 3.3e-24 115.2 100 69.0
Phvul.002G016200 Phaseolus vulgaris HOM05D000509 ORTHO05D000466 4.2e-24 114.8 99 66.7
Sabra05G0110100 Salix brachista HOM05D000509 ORTHO05D000466 7.2e-24 114.0 95 67.4
Gohir.D12G071000 Gossypium hirsutum HOM05D000509 ORTHO05D000466 9.5e-24 113.6 93 64.5
Thecc.01G061300 Theobroma cacao HOM05D000509 ORTHO05D000466 9.5e-24 113.6 99 65.7
TWI73G0680 Tripterygium wilfordii HOM05D000509 ORTHO05D000466 1.2e-23 113.2 100 69.0
Glyma.01G189000 Glycine max HOM05D000509 ORTHO05D000466 2.1e-23 112.5 99 64.6
Duzib187G0050 Durio zibethinus HOM05D000509 ORTHO05D000466 4.7e-23 111.3 104 62.5
Glyma.17G169200 Glycine max HOM05D000509 ORTHO05D000466 6.1e-23 110.9 96 64.6
Manes.13G120000 Manihot esculenta HOM05D000509 ORTHO05D000466 6.1e-23 110.9 101 67.3
VMungo1215G2677 Vigna mungo HOM05D000509 ORTHO05D000466 6.1e-23 110.9 99 63.6
Gohir.D11G050700 Gossypium hirsutum HOM05D000509 ORTHO05D000466 1.0e-22 110.2 97 69.1
Gorai.007G055100 Gossypium raimondii HOM05D000509 ORTHO05D000466 1.0e-22 110.2 97 69.1
Lj2g0012317 Lotus japonicus HOM05D000509 ORTHO05D000466 1.0e-22 110.2 93 66.7
Potri.005G141300 Populus trichocarpa HOM05D000509 ORTHO05D000466 1.8e-22 109.4 105 62.9
Ca_27523_v3 Cicer arietinum L. HOM05D000509 ORTHO05D000466 2.3e-22 109.0 97 67.0
Duzib147G0449 Durio zibethinus HOM05D000509 ORTHO05D000466 3.0e-22 108.6 99 65.7
Lalb_Chr16g0388781 Lupinus albus HOM05D000509 ORTHO05D000466 3.0e-22 108.6 96 62.5
Atru.chr3.275 Acer truncatum HOM05D000509 ORTHO05D000466 4.0e-22 108.2 101 65.3
Glyma.05G085700 Glycine max HOM05D000509 ORTHO05D000466 5.2e-22 107.8 101 63.4
Gohir.A11G047100 Gossypium hirsutum HOM05D000509 ORTHO05D000466 5.2e-22 107.8 97 68.0
Sabra07G0041900 Salix brachista HOM05D000509 ORTHO05D000466 5.2e-22 107.8 103 66.0
Medtr4g094895 Medicago truncatula HOM05D000509 ORTHO05D000466 2.0e-21 105.9 97 64.9
TPR.G14590 Trifolium pratense HOM05D000509 ORTHO05D000466 2.0e-21 105.9 97 64.9
Eucgr.I00888 Eucalyptus grandis HOM05D000509 ORTHO05D000466 2.6e-21 105.5 97 61.9
THA.LOC104821247 Tarenaya hassleriana HOM05D000509 ORTHO05D000466 3.4e-21 105.1 105 61.0
Ciclev10025796m.g Citrus clementina HOM05D000509 ORTHO05D000466 4.4e-21 104.8 104 59.6
Phvul.003G241300 Phaseolus vulgaris HOM05D000509 ORTHO05D000466 4.4e-21 104.8 101 64.4
Potri.007G047000 Populus trichocarpa HOM05D000509 ORTHO05D000466 4.4e-21 104.8 106 61.3
PGR004G0819 Punica granatum HOM05D000509 ORTHO05D000466 9.8e-21 103.6 97 59.8
CiPaw.02G006900 Carya illinoinensis HOM05D000509 ORTHO05D000466 1.3e-20 103.2 97 64.9
Psat4g085120 Pisum sativum HOM05D000509 ORTHO05D000466 1.3e-20 103.2 97 61.9
Gorai.007G216600 Gossypium raimondii HOM05D000509 ORTHO05D000466 2.2e-20 102.4 103 63.1
Sed0019413 Sechium edule HOM05D000509 ORTHO05D000466 2.8e-20 102.1 95 62.1
Cc07_g06260 Coffea canephora HOM05D000509 ORTHO05D000466 3.7e-20 101.7 99 61.6
Gohir.A11G196000 Gossypium hirsutum HOM05D000509 ORTHO05D000466 4.9e-20 101.3 103 62.1
Glyma.11G053200 Glycine max HOM05D000509 ORTHO05D000466 8.3e-20 100.5 99 61.6
Manes.12G107200 Manihot esculenta HOM05D000509 ORTHO05D000466 8.3e-20 100.5 94 64.9
FvH4_1g16440 Fragaria vesca HOM05D000509 ORTHO05D000466 1.4e-19 99.8 99 61.6
FAN19G2402 Fragaria x ananassa HOM05D000509 ORTHO05D000466 1.4e-19 99.8 99 61.6
FAN23G2826 Fragaria x ananassa HOM05D000509 ORTHO05D000466 1.4e-19 99.8 99 61.6
FAN26G1300 Fragaria x ananassa HOM05D000509 ORTHO05D000466 1.4e-19 99.8 99 61.6
FAN28G2915 Fragaria x ananassa HOM05D000509 ORTHO05D000466 1.4e-19 99.8 99 61.6
THA.LOC104827326 Tarenaya hassleriana HOM05D000509 ORTHO05D000466 1.8e-19 99.4 100 58.0
CiPaw.01G014600 Carya illinoinensis HOM05D000509 ORTHO05D000466 2.4e-19 99.0 98 62.2
Cpa.g.sc44.54 Carica papaya HOM05D000509 ORTHO05D000466 3.1e-19 98.6 97 61.9
Dinv26851 Davidia involucrata HOM05D000509 ORTHO05D000466 5.4e-19 97.8 106 60.4
Gohir.D11G202000 Gossypium hirsutum HOM05D000509 ORTHO05D000466 5.4e-19 97.8 106 59.4
C08p25270 Brassica napus HOM05D000509 ORTHO05D000466 1.6e-18 96.3 108 56.5
MD02G1177100 Malus domestica HOM05D000509 ORTHO05D000466 1.6e-18 96.3 96 59.4
BcaC07g39482 Brassica carinata HOM05D000509 ORTHO05D000466 2.0e-18 95.9 108 56.5
BolC8t50149H Brassica oleracea HOM05D000509 ORTHO05D000466 2.0e-18 95.9 108 56.5
VMungo0251G0357 Vigna mungo HOM05D000509 ORTHO05D000466 2.0e-18 95.9 100 60.0
Lalb_Chr05g0226221 Lupinus albus HOM05D000509 ORTHO05D000466 2.7e-18 95.5 96 57.3
MD15G1287000 Malus domestica HOM05D000509 ORTHO05D000466 4.5e-18 94.7 97 59.8
Oeu013234.1 Olea europaea HOM05D000509 ORTHO05D000466 4.5e-18 94.7 100 59.0
PGSC0003DMG400025474 Solanum tuberosum HOM05D000509 ORTHO05D000466 5.9e-18 94.4 99 57.6
Oeu014806.1 Olea europaea HOM05D000509 ORTHO05D000466 7.8e-18 94.0 100 58.0
AL8G44130 Arabidopsis lyrata HOM05D000509 ORTHO05D000466 1.0e-17 93.6 101 57.4
vmacro05262 Vaccinium macrocarpon HOM05D000509 ORTHO05D000466 1.0e-17 93.6 100 57.0
BcaB01g00632 Brassica carinata HOM05D000509 ORTHO05D000466 1.3e-17 93.2 110 57.3
DCAR_010869 Daucus carota HOM05D000509 ORTHO05D000466 1.3e-17 93.2 101 55.4
Sopen02g015070 Solanum pennellii HOM05D000509 ORTHO05D000466 1.3e-17 93.2 99 56.6
Sp2g29460 Schrenkiella parvula HOM05D000509 ORTHO05D000466 1.7e-17 92.8 97 55.7
AT3G50220 Arabidopsis thaliana HOM05D000509 ORTHO05D000466 2.3e-17 92.4 106 56.6
Aa31LG1G15740 Aethionema arabicum HOM05D000509 ORTHO05D000466 2.9e-17 92.0 103 55.3
Sp5g11940 Schrenkiella parvula HOM05D000509 ORTHO05D000466 2.9e-17 92.0 109 56.9
Sopen02g037660 Solanum pennellii HOM05D000509 ORTHO05D000466 2.9e-17 92.0 100 58.0
CAN.G370.31 Capsicum annuum HOM05D000509 ORTHO05D000466 3.8e-17 91.7 100 58.0
PGSC0003DMG400024989 Solanum tuberosum HOM05D000509 ORTHO05D000466 3.8e-17 91.7 100 58.0
Nitab4.5_0000604g0080 Nicotiana tabacum HOM05D000509 ORTHO05D000466 5.0e-17 91.3 100 58.0
Peaxi162Scf00032g03114 Petunia axillaris HOM05D000509 ORTHO05D000466 8.6e-17 90.5 100 57.0
Peaxi162Scf00549g00028 Petunia axillaris HOM05D000509 ORTHO05D000466 8.6e-17 90.5 99 57.6
BcaB02g09940 Brassica carinata HOM05D000509 ORTHO05D000466 1.5e-16 89.7 108 53.7
BcaC06g34803 Brassica carinata HOM05D000509 ORTHO05D000466 1.5e-16 89.7 100 55.0
C07p24490 Brassica napus HOM05D000509 ORTHO05D000466 1.5e-16 89.7 100 55.0
BolC7t42969H Brassica oleracea HOM05D000509 ORTHO05D000466 1.5e-16 89.7 100 55.0
Carub.0008s2730 Capsella rubella HOM05D000509 ORTHO05D000466 1.5e-16 89.7 95 54.7
Rhsim10G0113500 Rhododendron simsii HOM05D000509 ORTHO05D000466 1.5e-16 89.7 98 57.1
Solyc02g093090.1 Solanum lycopersicum HOM05D000509 ORTHO05D000466 1.5e-16 89.7 100 57.0
MSTRG.15376 Avicennia marina HOM05D000509 ORTHO05D000466 1.9e-16 89.4 100 58.0
Solyc02g064945.1 Solanum lycopersicum HOM05D000509 ORTHO05D000466 1.9e-16 89.4 99 55.6
Eucgr.H02125 Eucalyptus grandis HOM05D000509 ORTHO05D000466 2.5e-16 89.0 97 58.8
MSTRG.3438 Avicennia marina HOM05D000509 ORTHO05D000466 3.3e-16 88.6 97 56.7
A09p43280 Brassica napus HOM05D000509 ORTHO05D000466 3.3e-16 88.6 108 54.6
BraA09t39798Z Brassica rapa HOM05D000509 ORTHO05D000466 3.3e-16 88.6 108 54.6
Thhalv10004623m.g Eutrema salsugineum HOM05D000509 ORTHO05D000466 3.3e-16 88.6 95 55.8
Prupe.6G230900 Prunus persica HOM05D000509 ORTHO05D000466 5.6e-16 87.8 101 55.4
AL5G30350 Arabidopsis lyrata HOM05D000509 ORTHO05D000466 7.3e-16 87.4 106 53.8
Actinidia36469 Actinidia chinensis HOM05D000509 ORTHO05D000466 9.5e-16 87.0 89 57.3
Nitab4.5_0001603g0030 Nicotiana tabacum HOM05D000509 ORTHO05D000466 9.5e-16 87.0 100 58.0
CARHR280420 Cardamine hirsuta HOM05D000509 ORTHO05D000466 1.2e-15 86.7 96 52.1
Lj7A74T40 Lonicera japonica HOM05D000509 ORTHO05D000466 1.2e-15 86.7 98 54.1
AT5G67210 Arabidopsis thaliana HOM05D000509 ORTHO05D000466 1.6e-15 86.3 99 51.5
CANSAT25G1362 Cannabis sativa HOM05D000509 ORTHO05D000466 2.1e-15 85.9 103 53.4
SalBow5G5179 Salvia bowleyana HOM05D000509 ORTHO05D000466 2.1e-15 85.9 98 54.1
Nitab4.5_0000929g0070 Nicotiana tabacum HOM05D000509 ORTHO05D000466 2.8e-15 85.5 99 55.6
Nitab4.5_0002003g0010 Nicotiana tabacum HOM05D000509 ORTHO05D000466 2.8e-15 85.5 100 55.0
unitig_32.g10770 Utricularia gibba HOM05D000509 ORTHO05D000466 3.6e-15 85.1 99 51.5
A07p16760 Brassica napus HOM05D000509 ORTHO05D000466 6.1e-15 84.3 101 52.5
BraA07t29401Z Brassica rapa HOM05D000509 ORTHO05D000466 6.1e-15 84.3 101 52.5
Migut.L00176 Erythranthe guttata HOM05D000509 ORTHO05D000466 8.0e-15 84.0 97 52.6
Carub.0005s1654 Capsella rubella HOM05D000509 ORTHO05D000466 1.0e-14 83.6 108 50.9
Prupe.7G074500 Prunus persica HOM05D000509 ORTHO05D050593 3.0e-14 82.0 101 52.5
CARHR159580 Cardamine hirsuta HOM05D000509 ORTHO05D000466 4.0e-14 81.6 106 50.0
Actinidia12029 Actinidia chinensis HOM05D000509 ORTHO05D000466 6.8e-14 80.9 93 54.8
CANSAT25G2562 Cannabis sativa HOM05D000509 ORTHO05D000466 6.8e-14 80.9 103 53.4
TAR376G0426 Trochodendron aralioides HOM05D000509 ORTHO05D000466 6.8e-14 80.9 101 50.5
Thhalv10010543m.g Eutrema salsugineum HOM05D000509 ORTHO05D000466 8.9e-14 80.5 102 50.0
Hund14272 Selenicereus undatus HOM05D000509 ORTHO05D000466 2.6e-13 79.0 88 51.1
ECA232G4955 Erigeron canadensis HOM05D000509 ORTHO05D000466 4.4e-13 78.2 100 48.0
AUR62002394 Chenopodium quinoa HOM05D000509 ORTHO05D000466 5.8e-13 77.8 115 45.2
HanXRQChr11g0328301 Helianthus annuus HOM05D000509 ORTHO05D000466 9.8e-13 77.0 100 48.0
Ah.07g202730 Amaranthus hybridus HOM05D000509 ORTHO05D000466 1.3e-12 76.6 113 47.8
Ah.13g073500 Amaranthus hybridus HOM05D000509 ORTHO05D000466 1.7e-12 76.3 97 49.5
C09p11180 Brassica napus HOM05D000509 ORTHO05D000466 1.7e-12 76.3 105 47.6
BolC9t54007H Brassica oleracea HOM05D000509 ORTHO05D000466 1.7e-12 76.3 105 47.6
HanXRQChr11g0348451 Helianthus annuus HOM05D000509 ORTHO05D000466 2.9e-12 75.5 101 47.5
PSO675G0410 Papaver somniferum HOM05D000509 ORTHO05D000466 2.9e-12 75.5 105 48.6
PSO675G9292 Papaver somniferum HOM05D000509 ORTHO05D000466 2.9e-12 75.5 105 48.6
PSO541G3980 Papaver somniferum HOM05D000509 ORTHO05D000466 3.7e-12 75.1 105 48.6
EL10Ac3g06087 Beta vulgaris HOM05D000509 ORTHO05D000466 4.9e-12 74.7 119 41.2
ClCG01G016970 Citrullus lanatus HOM05D000509 ORTHO05D000466 6.4e-12 74.3 97 49.5
Hma1.2p1_0796F.1_g218980 Hydrangea macrophylla HOM05D000509 ORTHO05D000466 8.3e-12 73.9 92 53.3
CsaV3_6G043440 Cucumis sativus L. HOM05D000509 ORTHO05D000466 1.9e-11 72.8 97 48.5
BcaC04g23203 Brassica carinata HOM05D000509 ORTHO05D000466 2.4e-11 72.4 106 47.2
MELO3C007575.2 Cucumis melo HOM05D000509 ORTHO05D000466 1.2e-10 70.1 100 47.0
Lsat_1_v5_gn_4_164481 Lactuca sativa HOM05D000509 ORTHO05D000466 1.2e-10 70.1 100 47.0
Dinv15743 Davidia involucrata HOM05D000509 ORTHO05D000466 7.8e-10 67.4 88 50.0
Lsat_1_v5_gn_3_90220 Lactuca sativa HOM05D000509 ORTHO05D000466 3.9e-09 65.1 102 45.1
Aqoxy6G02916 Aquilegia oxysepala HOM05D000509 ORTHO05D000466 5.0e-09 64.7 102 42.2
ECA246G1321 Erigeron canadensis HOM05D000509 ORTHO05D000466 6.6e-09 64.3 97 44.3
Dinv42176 Davidia involucrata HOM05D000509 ORTHO05D000466 1.9e-08 62.8 88 47.7
Sc07g0000700 Simmondsia chinensis HOM05D000509 ORTHO05D000466 2.8e-07 58.9 89 41.6
Sopen01g049970 Solanum pennellii HOM05D000509 ORTHO05D000466 8.0e-07 57.4 98 42.9
PGSC0003DMG400025875 Solanum tuberosum HOM05D000509 ORTHO05D000466 8.0e-07 57.4 98 44.9
Dinv30020 Davidia involucrata HOM05D000509 ORTHO05D000466 1.1e-06 57.0 93 47.3
SGA_v2.0_scaffold43G16451 Striga asiatica HOM05D000509 ORTHO05D000466 2.3e-06 55.8 93 43.0
Solyc01g107800.4 Solanum lycopersicum HOM05D000509 ORTHO05D000466 6.8e-06 54.3 98 40.8


User provided reference genes

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