Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 0.0e+00 2601.6 1314 100.0
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1097.0 1355 48.4
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1094.7 1346 47.8
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1091.3 1337 47.2
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 0.0e+00 1082.4 1332 48.5
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1076.2 1319 47.9
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1075.5 1335 48.2
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 2.3e-310 1069.3 1337 48.0
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.5e-309 1066.6 1331 48.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 2.6e-309 1065.8 1332 48.0
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 3.4e-309 1065.4 1313 47.1
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 6.4e-308 1061.2 1331 48.2
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 1.4e-307 1060.1 1332 47.8
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 9.2e-307 1057.4 1332 47.7
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 3.0e-305 1052.4 1338 47.3
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 1.1e-304 1050.4 1334 46.5
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 2.1e-303 1046.2 1332 47.4
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 4.0e-302 1042.0 1329 46.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 8.9e-302 1040.8 1319 46.4
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.9e-300 1035.8 1344 46.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 1.2e-298 1030.4 1319 46.2
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 3.3e-296 1022.3 1340 46.4
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 8.1e-295 1017.7 1332 45.2
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 2.3e-294 1016.1 1319 45.8
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.5e-293 1013.4 1293 46.6
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 3.7e-292 1008.8 1338 46.1
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 4.1e-291 1005.4 1337 45.5
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 2.1e-290 1003.0 1338 44.7
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.1e-290 1003.0 1330 45.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.3e-289 999.6 1337 45.5
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 2.5e-288 996.1 1338 45.6
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.6e-287 993.4 1241 47.1
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.3e-284 983.8 1343 44.2
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 3.5e-282 975.7 1219 47.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.6e-279 966.8 1315 45.4
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 8.1e-279 964.5 1447 41.2
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.9e-276 956.1 1321 44.3
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 2.8e-271 939.5 1321 43.6
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 1.6e-266 923.7 1348 43.9
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 6.7e-265 918.3 1333 42.2
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 8.7e-265 917.9 1333 42.6
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 4.3e-264 915.6 1324 43.3
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 3.9e-257 892.5 1349 41.7
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 6.2e-255 885.2 1198 43.2
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 3.1e-254 882.9 1329 41.1
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.0e-252 877.9 1242 42.2
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 3.2e-251 872.8 1193 43.9
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 4.2e-251 872.5 1278 41.2
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 4.2e-251 872.5 1300 40.3
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 7.2e-251 871.7 1279 41.2
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 2.2e-247 860.1 1241 42.2
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.4e-246 856.7 1303 41.1
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 4.5e-245 852.4 1342 39.6
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 7.2e-243 845.1 1327 40.8
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 3.6e-242 842.8 1278 40.3
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 2.5e-240 836.6 1330 40.1
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 5.7e-240 835.5 1327 39.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 7.4e-240 835.1 1331 39.8
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 2.8e-239 833.2 1314 39.8
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 4.8e-239 832.4 1260 40.7
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 4.8e-239 832.4 1325 40.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 8.2e-239 831.6 1277 41.3
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.1e-238 831.2 1258 40.9
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 1.7e-236 823.9 1347 39.4
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 8.5e-236 821.6 1327 40.8
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 3.9e-233 812.8 1321 38.6
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 6.7e-233 812.0 1330 39.5
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 6.7e-233 812.0 1327 40.3
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 7.4e-232 808.5 1306 39.2
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.4e-225 787.7 1317 39.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.8e-217 760.8 1340 39.3
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.5e-216 757.7 1320 38.8
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 6.8e-209 732.3 1299 37.8
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 6.8e-209 732.3 1364 37.0
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 5.9e-205 719.2 1329 36.6
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 7.7e-205 718.8 1322 38.7
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 5.9e-197 692.6 1346 37.2
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 6.8e-193 679.1 1333 36.2
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 1.9e-187 661.0 1081 40.3
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.1e-185 653.7 1302 36.1
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 5.2e-185 652.9 1249 36.5
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 2.1e-178 630.9 1231 36.6
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 3.4e-176 623.6 1129 36.9
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 4.9e-175 619.8 1239 36.2
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.0e-172 612.1 1198 34.9
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.6e-168 597.4 1260 34.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 3.4e-168 597.0 1273 34.2
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 8.7e-164 582.4 901 39.0
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 1.3e-162 578.6 698 50.7
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.2e-160 572.0 1211 34.7
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.1e-153 548.9 704 47.9
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 4.2e-150 537.0 1312 32.1
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.4e-145 521.9 693 45.0
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.4e-137 495.4 713 43.8
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 4.1e-137 493.8 598 45.2
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 9.3e-134 482.6 606 45.9
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.1e-131 475.7 558 47.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 5.0e-127 460.3 709 44.0
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 2.6e-107 394.8 700 40.7
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.0e-103 382.9 792 35.0
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 5.5e-102 377.1 572 37.4
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 5.7e-99 367.1 790 34.3
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 6.8e-92 343.6 676 37.9
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.4e-84 319.3 823 29.4
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 1.4e-84 319.3 347 49.0
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.7e-79 302.4 856 28.7
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 3.3e-78 298.1 702 35.3
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 5.0e-71 274.2 677 34.1
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.2e-64 253.1 572 30.6
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.0e-63 250.0 894 28.0
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 5.6e-54 217.6 1143 23.7
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 5.8e-43 181.0 288 37.8
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 2.1e-37 162.5 174 47.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 8.2e-29 134.0 296 32.4
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 3.4e-27 128.6 557 28.5
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.8e-26 125.2 366 26.0
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 2.3e-23 115.9 553 29.7
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 1.6e-21 109.8 116 52.6
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 1.1e-20 107.1 226 33.2
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.1e-20 105.5 358 27.4
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 5.3e-20 104.8 141 40.4
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 3.1e-12 79.0 199 32.7
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.7e-10 73.2 374 27.8
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 3.8e-10 72.0 520 21.9
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.1e-09 70.5 195 30.3
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.9e-09 69.7 496 24.4
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.2e-08 67.0 445 27.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.6e-08 66.6 139 29.5
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 2.7e-08 65.9 445 28.1
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 1.8e-07 63.2 189 30.2
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 5.1e-07 61.6 444 27.7
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 8.8e-07 60.8 138 30.4
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 1.1e-06 60.5 248 34.3
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 1.1e-06 60.5 248 34.3
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 5.7e-06 58.2 78 43.6


User provided reference genes

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